RNA–Protein interactions for RNA: ENST00000478896.2

VCL-205, Transcript of vinculin, humanhuman

TSL 5

Gene VCL, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-205ENST00000478896 DZIP1LQ8IYY4 767 aaKnown RBP16.65■□□□□ 0.26
VCL-205ENST00000478896 TRIM17Q9Y577 477 aa16.65■□□□□ 0.26
VCL-205ENST00000478896 PTPRCP08575 1304 aa16.65■□□□□ 0.26
VCL-205ENST00000478896 MRPL50Q8N5N7 158 aaKnown RBP16.64■□□□□ 0.25
VCL-205ENST00000478896 TBC1D22AQ8WUA7 517 aa16.64■□□□□ 0.25
VCL-205ENST00000478896 OPTNQ96CV9 577 aa16.64■□□□□ 0.25
VCL-205ENST00000478896 ELP3Q9H9T3 547 aa16.64■□□□□ 0.25
VCL-205ENST00000478896 ZNF521Q96K83 1311 aa16.64■□□□□ 0.25
VCL-205ENST00000478896 GJA5P36382 358 aa16.63■□□□□ 0.25
VCL-205ENST00000478896 ANKRD44Q8N8A2 993 aa16.63■□□□□ 0.25
VCL-205ENST00000478896 E9PSI1 815 aa16.62■□□□□ 0.25
VCL-205ENST00000478896 PDE8BO95263 885 aa16.62■□□□□ 0.25
VCL-205ENST00000478896 FBXO33Q7Z6M2 555 aa16.62■□□□□ 0.25
VCL-205ENST00000478896 KLHDC4Q8TBB5 520 aa16.62■□□□□ 0.25
VCL-205ENST00000478896 TEKT1Q969V4 418 aa16.62■□□□□ 0.25
VCL-205ENST00000478896 ERO1AQ96HE7 468 aa16.62■□□□□ 0.25
VCL-205ENST00000478896 TMEM39BQ9GZU3 492 aa16.62■□□□□ 0.25
VCL-205ENST00000478896 TMOD2Q9NZR1 351 aa16.62■□□□□ 0.25
VCL-205ENST00000478896 CSADQ9Y600 493 aa16.62■□□□□ 0.25
VCL-205ENST00000478896 IFIT1P09914 478 aaKnown RBP16.61■□□□□ 0.25
VCL-205ENST00000478896 CRHR2Q13324 411 aa16.61■□□□□ 0.25
VCL-205ENST00000478896 OTOP1Q7RTM1 612 aa16.61■□□□□ 0.25
VCL-205ENST00000478896 CDAN1Q8IWY9 1227 aa16.61■□□□□ 0.25
VCL-205ENST00000478896 MAST3O60307 1309 aa16.61■□□□□ 0.25
VCL-205ENST00000478896 BCAMP50895 628 aa16.6■□□□□ 0.25
VCL-205ENST00000478896 CACNB3P54284 484 aa16.6■□□□□ 0.25
VCL-205ENST00000478896 VGLL4Q14135 290 aa16.6■□□□□ 0.25
VCL-205ENST00000478896 PUM3Q15397 648 aaKnown RBP16.6■□□□□ 0.25
VCL-205ENST00000478896 GRIK5Q16478 980 aa16.6■□□□□ 0.25
VCL-205ENST00000478896 VGLL2Q8N8G2 317 aa16.6■□□□□ 0.25
VCL-205ENST00000478896 CD99L2Q8TCZ2 262 aa16.6■□□□□ 0.25
VCL-205ENST00000478896 SSH1Q8WYL5 1049 aa16.6■□□□□ 0.25
VCL-205ENST00000478896 TEPSINQ96N21 525 aa16.6■□□□□ 0.25
VCL-205ENST00000478896 PDE4DIPQ5VU43 2346 aa16.59■□□□□ 0.25
VCL-205ENST00000478896 MAP3K9P80192 1104 aa16.59■□□□□ 0.25
VCL-205ENST00000478896 HDLBPQ00341 1268 aaKnown RBP16.59■□□□□ 0.25
VCL-205ENST00000478896 PRPF38BQ5VTL8 546 aaKnown RBP16.59■□□□□ 0.25
VCL-205ENST00000478896 TESPA1A2RU30 521 aaPredicted RBP16.58■□□□□ 0.24
VCL-205ENST00000478896 SLC5A1P13866 664 aa16.58■□□□□ 0.24
VCL-205ENST00000478896 GTF2A2P52657 109 aa16.58■□□□□ 0.24
VCL-205ENST00000478896 SP3Q02447 781 aa16.58■□□□□ 0.24
VCL-205ENST00000478896 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.58■□□□□ 0.24
VCL-205ENST00000478896 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.58■□□□□ 0.24
VCL-205ENST00000478896 CNKSR2Q8WXI2 1034 aa16.58■□□□□ 0.24
VCL-205ENST00000478896 OTUD5Q96G74 571 aa16.58■□□□□ 0.24
VCL-205ENST00000478896 PTPN18Q99952 460 aa16.58■□□□□ 0.24
VCL-205ENST00000478896 USP44Q9H0E7 712 aa16.58■□□□□ 0.24
VCL-205ENST00000478896 SMC4Q9NTJ3 1288 aa16.58■□□□□ 0.24
VCL-205ENST00000478896 KIF16BQ96L93 1317 aa16.57■□□□□ 0.24
VCL-205ENST00000478896 CCL15-CCL14A0A0B4J2E2 113 aa16.57■□□□□ 0.24
VCL-205ENST00000478896 TAF1CQ15572 869 aaPredicted RBP16.57■□□□□ 0.24
VCL-205ENST00000478896 CCL15Q16663 113 aa16.57■□□□□ 0.24
VCL-205ENST00000478896 ZDHHC15Q96MV8 337 aa16.57■□□□□ 0.24
VCL-205ENST00000478896 EFCC1Q9HA90 598 aa16.57■□□□□ 0.24
VCL-205ENST00000478896 AK9Q5TCS8 1911 aa16.57■□□□□ 0.24
VCL-205ENST00000478896 EYA2O00167 538 aa16.56■□□□□ 0.24
VCL-205ENST00000478896 ALDH1L2Q3SY69 923 aa16.56■□□□□ 0.24
VCL-205ENST00000478896 INTS3Q68E01 1043 aaKnown RBP16.56■□□□□ 0.24
VCL-205ENST00000478896 HOOK2Q96ED9 719 aa16.56■□□□□ 0.24
VCL-205ENST00000478896 MS4A4AQ96JQ5 239 aa16.56■□□□□ 0.24
VCL-205ENST00000478896 WRNIP1Q96S55 665 aa16.56■□□□□ 0.24
VCL-205ENST00000478896 ZFYVE28Q9HCC9 887 aa16.56■□□□□ 0.24
VCL-205ENST00000478896 PTPN22Q9Y2R2 807 aa16.56■□□□□ 0.24
VCL-205ENST00000478896 SUGT1Q9Y2Z0 365 aa16.56■□□□□ 0.24
VCL-205ENST00000478896 WDHD1O75717 1129 aaPredicted RBP16.55■□□□□ 0.24
VCL-205ENST00000478896 FGFR2P21802 821 aa16.55■□□□□ 0.24
VCL-205ENST00000478896 SLFN5Q08AF3 891 aa16.55■□□□□ 0.24
VCL-205ENST00000478896 DCAF15Q66K64 600 aa16.55■□□□□ 0.24
VCL-205ENST00000478896 BRI3BPQ8WY22 251 aa16.55■□□□□ 0.24
VCL-205ENST00000478896 LPIN2Q92539 896 aa16.55■□□□□ 0.24
VCL-205ENST00000478896 RBBP6Q7Z6E9 1792 aaKnown RBP16.54■□□□□ 0.24
VCL-205ENST00000478896 RPAP1Q9BWH6 1393 aaPredicted RBP16.54■□□□□ 0.24
VCL-205ENST00000478896 SPDYE5A6NIY4 337 aa16.54■□□□□ 0.24
VCL-205ENST00000478896 UBTFL1P0CB47 393 aaPredicted RBP16.54■□□□□ 0.24
VCL-205ENST00000478896 FAM83AQ86UY5 434 aa16.54■□□□□ 0.24
VCL-205ENST00000478896 WDR66Q8TBY9 1149 aa16.54■□□□□ 0.24
VCL-205ENST00000478896 MRIQ9BWK5 157 aa16.54■□□□□ 0.24
VCL-205ENST00000478896 SIL1Q9H173 461 aa16.54■□□□□ 0.24
VCL-205ENST00000478896 RFX5P48382 616 aaPredicted RBP16.53■□□□□ 0.24
VCL-205ENST00000478896 ARHGEF6Q15052 776 aa16.53■□□□□ 0.24
VCL-205ENST00000478896 APOBEC3HQ6NTF7 200 aaKnown RBP16.53■□□□□ 0.24
VCL-205ENST00000478896 HHIPL2Q6UWX4 724 aa16.53■□□□□ 0.24
VCL-205ENST00000478896 FAM43AQ8N2R8 423 aa16.53■□□□□ 0.24
VCL-205ENST00000478896 SNCAIPQ9Y6H5 919 aa16.53■□□□□ 0.24
VCL-205ENST00000478896 TNRC18O15417 2968 aaPredicted RBP16.53■□□□□ 0.24
VCL-205ENST00000478896 POTEFA5A3E0 1075 aa16.52■□□□□ 0.24
VCL-205ENST00000478896 CETPP11597 493 aa16.52■□□□□ 0.24
VCL-205ENST00000478896 FKBP1CQ5VVH2 108 aa16.52■□□□□ 0.24
VCL-205ENST00000478896 ERO1BQ86YB8 467 aa16.52■□□□□ 0.24
VCL-205ENST00000478896 ZKSCAN4Q969J2 545 aaPredicted RBP16.52■□□□□ 0.24
VCL-205ENST00000478896 CDCA7LQ96GN5 454 aa16.52■□□□□ 0.24
VCL-205ENST00000478896 GNL3LQ9NVN8 582 aaKnown RBP16.52■□□□□ 0.24
VCL-205ENST00000478896 TCP10Q12799 353 aa16.51■□□□□ 0.23
VCL-205ENST00000478896 SNAPC2Q13487 334 aa16.51■□□□□ 0.23
VCL-205ENST00000478896 ATP2B3Q16720 1220 aa16.51■□□□□ 0.23
VCL-205ENST00000478896 MIGA2Q7L4E1 593 aa16.51■□□□□ 0.23
VCL-205ENST00000478896 ZNF341Q9BYN7 854 aa16.51■□□□□ 0.23
VCL-205ENST00000478896 CEP126Q9P2H0 1117 aa16.51■□□□□ 0.23
VCL-205ENST00000478896 IRF6O14896 467 aa16.5■□□□□ 0.23
VCL-205ENST00000478896 LDHBP07195 334 aaKnown RBP16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms