RNA–Protein interactions for RNA: ENST00000477552.1

PTPRD-209, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 4

Gene PTPRD, Length 551 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-209ENST00000477552 CHAMP1Q96JM3 812 aa9.74□□□□□ -0.85
PTPRD-209ENST00000477552 SEC62Q99442 399 aaKnown RBP9.74□□□□□ -0.85
PTPRD-209ENST00000477552 SDF4Q9BRK5 362 aa9.74□□□□□ -0.85
PTPRD-209ENST00000477552 KCND1Q9NSA2 647 aa9.74□□□□□ -0.85
PTPRD-209ENST00000477552 ORC3Q9UBD5 711 aaPredicted RBP9.74□□□□□ -0.85
PTPRD-209ENST00000477552 KLF18A0A0U1RQI7 1052 aa9.73□□□□□ -0.85
PTPRD-209ENST00000477552 GOLGA8BA8MQT2 603 aa9.73□□□□□ -0.85
PTPRD-209ENST00000477552 PATL2C9JE40 543 aaKnown RBP9.73□□□□□ -0.85
PTPRD-209ENST00000477552 IRS4O14654 1257 aaPredicted RBP9.73□□□□□ -0.85
PTPRD-209ENST00000477552 GPAA1O43292 621 aa9.73□□□□□ -0.85
PTPRD-209ENST00000477552 NR1I2O75469 434 aa9.73□□□□□ -0.85
PTPRD-209ENST00000477552 CYP19A1P11511 503 aaPredicted RBP9.73□□□□□ -0.85
PTPRD-209ENST00000477552 SAFBQ15424 915 aaKnown RBP eCLIP9.73□□□□□ -0.85
PTPRD-209ENST00000477552 ENGASEQ8NFI3 743 aa9.73□□□□□ -0.85
PTPRD-209ENST00000477552 PIGBQ92521 554 aa9.73□□□□□ -0.85
PTPRD-209ENST00000477552 SMARCC1Q92922 1105 aaPredicted RBP9.73□□□□□ -0.85
PTPRD-209ENST00000477552 DDX11Q96FC9 970 aa9.73□□□□□ -0.85
PTPRD-209ENST00000477552 PGBD1Q96JS3 809 aa9.73□□□□□ -0.85
PTPRD-209ENST00000477552 TCEANC2Q96MN5 208 aa9.73□□□□□ -0.85
PTPRD-209ENST00000477552 GNL3LQ9NVN8 582 aaKnown RBP9.73□□□□□ -0.85
PTPRD-209ENST00000477552 TRMT112Q9UI30 125 aaKnown RBP9.73□□□□□ -0.85
PTPRD-209ENST00000477552 CEP131Q9UPN4 1083 aa9.73□□□□□ -0.85
PTPRD-209ENST00000477552 ZNF652Q9Y2D9 606 aa9.73□□□□□ -0.85
PTPRD-209ENST00000477552 RREB1Q92766 1687 aa9.73□□□□□ -0.85
PTPRD-209ENST00000477552 TIAM2Q8IVF5 1701 aa9.73□□□□□ -0.85
PTPRD-209ENST00000477552 NWD2Q9ULI1 1742 aa9.73□□□□□ -0.85
PTPRD-209ENST00000477552 RIC1Q4ADV7 1423 aa9.73□□□□□ -0.85
PTPRD-209ENST00000477552 AHDC1Q5TGY3 1603 aaPredicted RBP9.72□□□□□ -0.85
PTPRD-209ENST00000477552 FAM237AA0A1B0GTK4 181 aa9.72□□□□□ -0.85
PTPRD-209ENST00000477552 ERICH2A1L162 156 aa9.72□□□□□ -0.85
PTPRD-209ENST00000477552 M0R2C6 588 aa9.72□□□□□ -0.85
PTPRD-209ENST00000477552 IKBKBO14920 756 aa9.72□□□□□ -0.85
PTPRD-209ENST00000477552 SPTLC2O15270 562 aa9.72□□□□□ -0.85
PTPRD-209ENST00000477552 CBFA2T2O43439 604 aa9.72□□□□□ -0.85
PTPRD-209ENST00000477552 CTDNEP1O95476 244 aa9.72□□□□□ -0.85
PTPRD-209ENST00000477552 BMP15O95972 392 aa9.72□□□□□ -0.85
PTPRD-209ENST00000477552 XBP1P17861 261 aa9.72□□□□□ -0.85
PTPRD-209ENST00000477552 ZAP70P43403 619 aa9.72□□□□□ -0.85
PTPRD-209ENST00000477552 METAP2P50579 478 aaKnown RBP eCLIP9.72□□□□□ -0.85
PTPRD-209ENST00000477552 CCDC152Q4G0S7 254 aa9.72□□□□□ -0.85
PTPRD-209ENST00000477552 SLC9C2Q5TAH2 1124 aa9.72□□□□□ -0.85
PTPRD-209ENST00000477552 MYSM1Q5VVJ2 828 aa9.72□□□□□ -0.85
PTPRD-209ENST00000477552 KANK3Q6NY19 840 aa9.72□□□□□ -0.85
PTPRD-209ENST00000477552 DNAJC10Q8IXB1 793 aa9.72□□□□□ -0.85
PTPRD-209ENST00000477552 TRIM22Q8IYM9 498 aa9.72□□□□□ -0.85
PTPRD-209ENST00000477552 ZNF34Q8IZ26 560 aa9.72□□□□□ -0.85
PTPRD-209ENST00000477552 PDCL2Q8N4E4 241 aa9.72□□□□□ -0.85
PTPRD-209ENST00000477552 FSIP1Q8NA03 581 aa9.72□□□□□ -0.85
PTPRD-209ENST00000477552 LINC00301Q8NCQ3 95 aa9.72□□□□□ -0.85
PTPRD-209ENST00000477552 DDX17Q92841 729 aaKnown RBP9.72□□□□□ -0.85
PTPRD-209ENST00000477552 AIDAQ96BJ3 306 aa9.72□□□□□ -0.85
PTPRD-209ENST00000477552 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.72□□□□□ -0.85
PTPRD-209ENST00000477552 STRN4Q9NRL3 753 aa9.72□□□□□ -0.85
PTPRD-209ENST00000477552 CLIP2Q9UDT6 1046 aa9.72□□□□□ -0.85
PTPRD-209ENST00000477552 DACH1Q9UI36 760 aa9.72□□□□□ -0.85
PTPRD-209ENST00000477552 PNPLA7Q6ZV29 1317 aa9.72□□□□□ -0.85
PTPRD-209ENST00000477552 C4AP0C0L4 1744 aa9.71□□□□□ -0.85
PTPRD-209ENST00000477552 C4BP0C0L5 1744 aa9.71□□□□□ -0.85
PTPRD-209ENST00000477552 ZBTB43O43298 467 aa9.71□□□□□ -0.86
PTPRD-209ENST00000477552 IGHMBP2P38935 993 aaKnown RBP9.71□□□□□ -0.86
PTPRD-209ENST00000477552 GNL2Q13823 731 aaKnown RBP9.71□□□□□ -0.86
PTPRD-209ENST00000477552 SLC39A14Q15043 492 aa9.71□□□□□ -0.86
PTPRD-209ENST00000477552 IQCB1Q15051 598 aa9.71□□□□□ -0.86
PTPRD-209ENST00000477552 CAMK4Q16566 473 aa9.71□□□□□ -0.86
PTPRD-209ENST00000477552 ANO1Q5XXA6 986 aa9.71□□□□□ -0.86
PTPRD-209ENST00000477552 CLEC4GQ6UXB4 293 aa9.71□□□□□ -0.86
PTPRD-209ENST00000477552 DZIP3Q86Y13 1208 aaKnown RBP9.71□□□□□ -0.86
PTPRD-209ENST00000477552 CKAP2LQ8IYA6 745 aa9.71□□□□□ -0.86
PTPRD-209ENST00000477552 FMR1NBQ8N0W7 255 aaPredicted RBP9.71□□□□□ -0.86
PTPRD-209ENST00000477552 FAM177A1Q8N128 213 aaPredicted RBP9.71□□□□□ -0.86
PTPRD-209ENST00000477552 VGLL2Q8N8G2 317 aa9.71□□□□□ -0.86
PTPRD-209ENST00000477552 CCDC150Q8NCX0 1101 aa9.71□□□□□ -0.86
PTPRD-209ENST00000477552 UBE2Q2Q8WVN8 375 aa9.71□□□□□ -0.86
PTPRD-209ENST00000477552 JARID2Q92833 1246 aaPredicted RBP9.71□□□□□ -0.86
PTPRD-209ENST00000477552 FAM89AQ96GI7 184 aa9.71□□□□□ -0.86
PTPRD-209ENST00000477552 USP28Q96RU2 1077 aa9.71□□□□□ -0.86
PTPRD-209ENST00000477552 MPHOSPH8Q99549 860 aa9.71□□□□□ -0.86
PTPRD-209ENST00000477552 PYM1Q9BRP8 204 aaKnown RBP9.71□□□□□ -0.86
PTPRD-209ENST00000477552 KIAA1468Q9P260 1216 aa9.71□□□□□ -0.86
PTPRD-209ENST00000477552 NAP1L2Q9ULW6 460 aaPredicted RBP9.71□□□□□ -0.86
PTPRD-209ENST00000477552 TAF6LQ9Y6J9 622 aa9.71□□□□□ -0.86
PTPRD-209ENST00000477552 SEMA3EO15041 775 aa9.7□□□□□ -0.86
PTPRD-209ENST00000477552 CUTAO60888 179 aa9.7□□□□□ -0.86
PTPRD-209ENST00000477552 SLC3A2P08195 630 aaKnown RBP9.7□□□□□ -0.86
PTPRD-209ENST00000477552 FGFR2P21802 821 aa9.7□□□□□ -0.86
PTPRD-209ENST00000477552 HMGB2P26583 209 aaKnown RBP9.7□□□□□ -0.86
PTPRD-209ENST00000477552 IARSP41252 1262 aaKnown RBP9.7□□□□□ -0.86
PTPRD-209ENST00000477552 PIP4K2AP48426 406 aaPredicted RBP9.7□□□□□ -0.86
PTPRD-209ENST00000477552 CCT2P78371 535 aaKnown RBP9.7□□□□□ -0.86
PTPRD-209ENST00000477552 SNW1Q13573 536 aaKnown RBP9.7□□□□□ -0.86
PTPRD-209ENST00000477552 LUZP1Q86V48 1076 aa9.7□□□□□ -0.86
PTPRD-209ENST00000477552 CCDC112Q8NEF3 446 aa9.7□□□□□ -0.86
PTPRD-209ENST00000477552 ZNF594Q96JF6 807 aaPredicted RBP9.7□□□□□ -0.86
PTPRD-209ENST00000477552 UTP14AQ9BVJ6 771 aaKnown RBP9.7□□□□□ -0.86
PTPRD-209ENST00000477552 PUS3Q9BZE2 481 aaKnown RBP9.7□□□□□ -0.86
PTPRD-209ENST00000477552 NAPBQ9H115 298 aa9.7□□□□□ -0.86
PTPRD-209ENST00000477552 FAM13BQ9NYF5 915 aa9.7□□□□□ -0.86
PTPRD-209ENST00000477552 PDS5AQ29RF7 1337 aaKnown RBP9.7□□□□□ -0.86
PTPRD-209ENST00000477552 CCDC69A6NI79 296 aa9.69□□□□□ -0.86
PTPRD-209ENST00000477552 SH2B2O14492 632 aaPredicted RBP9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms