RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 XAGE2Q96GT9 111 aa18.67■□□□□ 0.58
LIMS1-212ENST00000474038 NEUROD6Q96NK8 337 aa18.67■□□□□ 0.58
LIMS1-212ENST00000474038 BEGAINQ9BUH8 593 aa18.67■□□□□ 0.58
LIMS1-212ENST00000474038 EXOC6BQ9Y2D4 811 aa18.67■□□□□ 0.58
LIMS1-212ENST00000474038 COL1A1P02452 1464 aaPredicted RBP18.66■□□□□ 0.58
LIMS1-212ENST00000474038 PAPPA2Q9BXP8 1791 aa18.66■□□□□ 0.58
LIMS1-212ENST00000474038 FAM155AB1AL88 458 aaPredicted RBP18.66■□□□□ 0.58
LIMS1-212ENST00000474038 ZNF157P51786 506 aaPredicted RBP18.66■□□□□ 0.58
LIMS1-212ENST00000474038 NOGQ13253 232 aa18.66■□□□□ 0.58
LIMS1-212ENST00000474038 DLGAP5Q15398 846 aa18.66■□□□□ 0.58
LIMS1-212ENST00000474038 CCDC102BQ68D86 513 aa18.66■□□□□ 0.58
LIMS1-212ENST00000474038 MOB2Q70IA6 237 aa18.66■□□□□ 0.58
LIMS1-212ENST00000474038 GPR108Q9NPR9 543 aa18.66■□□□□ 0.58
LIMS1-212ENST00000474038 GNL3LQ9NVN8 582 aaKnown RBP18.66■□□□□ 0.58
LIMS1-212ENST00000474038 TSKSQ9UJT2 592 aa18.66■□□□□ 0.58
LIMS1-212ENST00000474038 AKAP11Q9UKA4 1901 aa18.66■□□□□ 0.58
LIMS1-212ENST00000474038 HMMRO75330 724 aa18.65■□□□□ 0.58
LIMS1-212ENST00000474038 GRIK5Q16478 980 aa18.65■□□□□ 0.58
LIMS1-212ENST00000474038 CFAP100Q494V2 611 aa18.65■□□□□ 0.58
LIMS1-212ENST00000474038 TBC1D22AQ8WUA7 517 aa18.65■□□□□ 0.58
LIMS1-212ENST00000474038 ZBTB22O15209 634 aa18.64■□□□□ 0.57
LIMS1-212ENST00000474038 TNNI3KQ59H18 835 aa18.64■□□□□ 0.57
LIMS1-212ENST00000474038 APOBEC3FQ8IUX4 373 aaKnown RBP18.64■□□□□ 0.57
LIMS1-212ENST00000474038 MTMR14Q8NCE2 650 aa18.64■□□□□ 0.57
LIMS1-212ENST00000474038 FPGT-TNNI3KV9GXZ4 949 aa18.64■□□□□ 0.57
LIMS1-212ENST00000474038 AOX1Q06278 1338 aa18.64■□□□□ 0.57
LIMS1-212ENST00000474038 MYO5AQ9Y4I1 1855 aaKnown RBP18.63■□□□□ 0.57
LIMS1-212ENST00000474038 MYH2Q9UKX2 1941 aa18.63■□□□□ 0.57
LIMS1-212ENST00000474038 SEMA3EO15041 775 aa18.63■□□□□ 0.57
LIMS1-212ENST00000474038 CAPN15O75808 1086 aa18.63■□□□□ 0.57
LIMS1-212ENST00000474038 WDR66Q8TBY9 1149 aa18.63■□□□□ 0.57
LIMS1-212ENST00000474038 CCDC102AQ96A19 550 aa18.63■□□□□ 0.57
LIMS1-212ENST00000474038 CRBNQ96SW2 442 aa18.63■□□□□ 0.57
LIMS1-212ENST00000474038 TTF2Q9UNY4 1162 aaKnown RBP18.63■□□□□ 0.57
LIMS1-212ENST00000474038 CLRN2A0PK11 232 aa18.62■□□□□ 0.57
LIMS1-212ENST00000474038 SPDYE2BA6NHP3 402 aa18.62■□□□□ 0.57
LIMS1-212ENST00000474038 UBE2Q2LH0YL09 131 aa18.62■□□□□ 0.57
LIMS1-212ENST00000474038 SLC10A3P09131 477 aa18.62■□□□□ 0.57
LIMS1-212ENST00000474038 SPDYE6P0CI01 402 aa18.62■□□□□ 0.57
LIMS1-212ENST00000474038 FKBP1BP68106 108 aa18.62■□□□□ 0.57
LIMS1-212ENST00000474038 RASGRF1Q13972 1273 aa18.62■□□□□ 0.57
LIMS1-212ENST00000474038 TTLL12Q14166 644 aaPredicted RBP18.62■□□□□ 0.57
LIMS1-212ENST00000474038 HSP90AB4PQ58FF6 505 aa18.62■□□□□ 0.57
LIMS1-212ENST00000474038 GORABQ5T7V8 394 aa18.62■□□□□ 0.57
LIMS1-212ENST00000474038 RASAL3Q86YV0 1011 aa18.62■□□□□ 0.57
LIMS1-212ENST00000474038 ERC1Q8IUD2 1116 aa18.62■□□□□ 0.57
LIMS1-212ENST00000474038 PRMT6Q96LA8 375 aaPredicted RBP18.62■□□□□ 0.57
LIMS1-212ENST00000474038 DENND2AQ9ULE3 1009 aa18.62■□□□□ 0.57
LIMS1-212ENST00000474038 RBM5P52756 815 aaKnown RBP eCLIP18.61■□□□□ 0.57
LIMS1-212ENST00000474038 KIF23Q02241 960 aaPredicted RBP18.61■□□□□ 0.57
LIMS1-212ENST00000474038 NF2P35240 595 aa18.6■□□□□ 0.57
LIMS1-212ENST00000474038 PRKG1Q13976 671 aa18.6■□□□□ 0.57
LIMS1-212ENST00000474038 RHPN1Q8TCX5 695 aa18.6■□□□□ 0.57
LIMS1-212ENST00000474038 EAF2Q96CJ1 260 aaPredicted RBP18.6■□□□□ 0.57
LIMS1-212ENST00000474038 DBNDD2Q9BQY9 259 aa18.6■□□□□ 0.57
LIMS1-212ENST00000474038 DEFB129Q9H1M3 183 aa18.6■□□□□ 0.57
LIMS1-212ENST00000474038 VEZTQ9HBM0 779 aa18.6■□□□□ 0.57
LIMS1-212ENST00000474038 SERPINA10Q9UK55 444 aa18.6■□□□□ 0.57
LIMS1-212ENST00000474038 SUGT1Q9Y2Z0 365 aa18.6■□□□□ 0.57
LIMS1-212ENST00000474038 PDS5AQ29RF7 1337 aaKnown RBP18.59■□□□□ 0.57
LIMS1-212ENST00000474038 SALL1Q9NSC2 1324 aa18.59■□□□□ 0.57
LIMS1-212ENST00000474038 APBB1O00213 710 aa18.59■□□□□ 0.57
LIMS1-212ENST00000474038 ARID4AP29374 1257 aaPredicted RBP18.59■□□□□ 0.57
LIMS1-212ENST00000474038 CCDC8Q9H0W5 538 aaPredicted RBP18.59■□□□□ 0.57
LIMS1-212ENST00000474038 DBNLQ9UJU6 430 aaKnown RBP18.59■□□□□ 0.57
LIMS1-212ENST00000474038 SUPT16HQ9Y5B9 1047 aaKnown RBP18.59■□□□□ 0.57
LIMS1-212ENST00000474038 PCDHB15Q9Y5E8 787 aa18.59■□□□□ 0.57
LIMS1-212ENST00000474038 CA12O43570 354 aa18.58■□□□□ 0.56
LIMS1-212ENST00000474038 MYO1BO43795 1136 aa18.58■□□□□ 0.56
LIMS1-212ENST00000474038 CRKP46108 304 aa18.58■□□□□ 0.56
LIMS1-212ENST00000474038 HDLBPQ00341 1268 aaKnown RBP18.58■□□□□ 0.56
LIMS1-212ENST00000474038 KIF1BPQ96EK5 621 aa18.58■□□□□ 0.56
LIMS1-212ENST00000474038 IL1RAPL2Q9NP60 686 aa18.58■□□□□ 0.56
LIMS1-212ENST00000474038 TLR7Q9NYK1 1049 aaKnown RBP18.58■□□□□ 0.56
LIMS1-212ENST00000474038 HMG20BQ9P0W2 317 aa18.58■□□□□ 0.56
LIMS1-212ENST00000474038 FZD1Q9UP38 647 aa18.58■□□□□ 0.56
LIMS1-212ENST00000474038 SSC5DA1L4H1 1573 aa18.57■□□□□ 0.56
LIMS1-212ENST00000474038 RAB11FIP3O75154 756 aa18.57■□□□□ 0.56
LIMS1-212ENST00000474038 UQCRFS1P1P0C7P4 283 aa18.57■□□□□ 0.56
LIMS1-212ENST00000474038 PI16Q6UXB8 463 aa18.57■□□□□ 0.56
LIMS1-212ENST00000474038 MAST3O60307 1309 aa18.56■□□□□ 0.56
LIMS1-212ENST00000474038 PRDX5P30044 214 aa18.56■□□□□ 0.56
LIMS1-212ENST00000474038 MCAMP43121 646 aa18.56■□□□□ 0.56
LIMS1-212ENST00000474038 CCDC158Q5M9N0 1113 aa18.56■□□□□ 0.56
LIMS1-212ENST00000474038 TTC39AQ5SRH9 613 aa18.56■□□□□ 0.56
LIMS1-212ENST00000474038 ARMC9Q7Z3E5 817 aa18.56■□□□□ 0.56
LIMS1-212ENST00000474038 AACSQ86V21 672 aa18.56■□□□□ 0.56
LIMS1-212ENST00000474038 SPATA5Q8NB90 893 aa18.56■□□□□ 0.56
LIMS1-212ENST00000474038 TEKT1Q969V4 418 aa18.56■□□□□ 0.56
LIMS1-212ENST00000474038 CSRNP1Q96S65 589 aa18.56■□□□□ 0.56
LIMS1-212ENST00000474038 MRIQ9BWK5 157 aa18.56■□□□□ 0.56
LIMS1-212ENST00000474038 TDRD3Q9H7E2 651 aaKnown RBP18.56■□□□□ 0.56
LIMS1-212ENST00000474038 ANGEL1Q9UNK9 670 aaKnown RBP18.56■□□□□ 0.56
LIMS1-212ENST00000474038 CASP8AP2Q9UKL3 1982 aa18.55■□□□□ 0.56
LIMS1-212ENST00000474038 LDHBP07195 334 aaKnown RBP18.55■□□□□ 0.56
LIMS1-212ENST00000474038 SPDYE2Q495Y8 402 aa18.55■□□□□ 0.56
LIMS1-212ENST00000474038 ZGPATQ8N5A5 531 aaKnown RBP18.55■□□□□ 0.56
LIMS1-212ENST00000474038 ZNF512BQ96KM6 892 aaPredicted RBP18.55■□□□□ 0.56
LIMS1-212ENST00000474038 ZNF70Q9UC06 446 aaPredicted RBP18.55■□□□□ 0.56
LIMS1-212ENST00000474038 PPP2R3BQ9Y5P8 575 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms