RNA–Protein interactions for RNA: ENST00000472585.1

VCL-204, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-204ENST00000472585 MPHOSPH8Q99549 860 aa11.94□□□□□ -0.5
VCL-204ENST00000472585 RBM27Q9P2N5 1060 aaKnown RBP11.94□□□□□ -0.5
VCL-204ENST00000472585 FARP1Q9Y4F1 1045 aaPredicted RBP11.94□□□□□ -0.5
VCL-204ENST00000472585 PPP2R3BQ9Y5P8 575 aa11.94□□□□□ -0.5
VCL-204ENST00000472585 PTCH2Q9Y6C5 1203 aa11.94□□□□□ -0.5
VCL-204ENST00000472585 ECM29Q5VYK3 1845 aa11.94□□□□□ -0.5
VCL-204ENST00000472585 TESPA1A2RU30 521 aaPredicted RBP11.93□□□□□ -0.5
VCL-204ENST00000472585 MYO1BO43795 1136 aa11.93□□□□□ -0.5
VCL-204ENST00000472585 WDHD1O75717 1129 aaPredicted RBP11.93□□□□□ -0.5
VCL-204ENST00000472585 FLIIQ13045 1269 aa11.93□□□□□ -0.5
VCL-204ENST00000472585 MS4A4AQ96JQ5 239 aa11.93□□□□□ -0.5
VCL-204ENST00000472585 ZFYVE28Q9HCC9 887 aa11.93□□□□□ -0.5
VCL-204ENST00000472585 MYH3P11055 1940 aa11.92□□□□□ -0.5
VCL-204ENST00000472585 F6X3S4 739 aa11.92□□□□□ -0.5
VCL-204ENST00000472585 RASA3Q14644 834 aa11.92□□□□□ -0.5
VCL-204ENST00000472585 KIF22Q14807 665 aa11.92□□□□□ -0.5
VCL-204ENST00000472585 TAF1CQ15572 869 aaPredicted RBP11.92□□□□□ -0.5
VCL-204ENST00000472585 GRIK5Q16478 980 aa11.92□□□□□ -0.5
VCL-204ENST00000472585 ANKRD13AQ8IZ07 590 aa11.92□□□□□ -0.5
VCL-204ENST00000472585 LINS1Q8NG48 757 aa11.92□□□□□ -0.5
VCL-204ENST00000472585 DNAAF4Q8WXU2 420 aa11.92□□□□□ -0.5
VCL-204ENST00000472585 STK31Q9BXU1 1019 aa11.92□□□□□ -0.5
VCL-204ENST00000472585 RANBP2P49792 3224 aaKnown RBP11.91□□□□□ -0.5
VCL-204ENST00000472585 ANKRD18BA2A2Z9 1011 aa11.91□□□□□ -0.5
VCL-204ENST00000472585 VAMP4O75379 141 aa11.91□□□□□ -0.5
VCL-204ENST00000472585 KCNJ4P48050 445 aa11.91□□□□□ -0.5
VCL-204ENST00000472585 BEND3Q5T5X7 828 aa11.91□□□□□ -0.5
VCL-204ENST00000472585 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.91□□□□□ -0.5
VCL-204ENST00000472585 SH3TC2Q8TF17 1288 aa11.91□□□□□ -0.5
VCL-204ENST00000472585 TEPSINQ96N21 525 aa11.91□□□□□ -0.5
VCL-204ENST00000472585 VEZTQ9HBM0 779 aa11.91□□□□□ -0.5
VCL-204ENST00000472585 FKBP1AP62942 108 aaKnown RBP11.9□□□□□ -0.5
VCL-204ENST00000472585 CCDC27Q2M243 656 aa11.9□□□□□ -0.5
VCL-204ENST00000472585 LMBR1LQ6UX01 489 aa11.9□□□□□ -0.5
VCL-204ENST00000472585 BRI3BPQ8WY22 251 aa11.9□□□□□ -0.5
VCL-204ENST00000472585 OPTNQ96CV9 577 aa11.9□□□□□ -0.5
VCL-204ENST00000472585 HTATIP2Q9BUP3 242 aa11.9□□□□□ -0.5
VCL-204ENST00000472585 ELP3Q9H9T3 547 aa11.9□□□□□ -0.5
VCL-204ENST00000472585 ZNF70Q9UC06 446 aaPredicted RBP11.9□□□□□ -0.5
VCL-204ENST00000472585 COL6A3P12111 3177 aa11.89□□□□□ -0.51
VCL-204ENST00000472585 PLIN1O60240 522 aa11.89□□□□□ -0.51
VCL-204ENST00000472585 FKBP5Q13451 457 aaPredicted RBP11.89□□□□□ -0.51
VCL-204ENST00000472585 TDRD7Q8NHU6 1098 aaKnown RBP11.89□□□□□ -0.51
VCL-204ENST00000472585 NKX2-3Q8TAU0 364 aa11.89□□□□□ -0.51
VCL-204ENST00000472585 FAM84BQ96KN1 310 aaPredicted RBP11.89□□□□□ -0.51
VCL-204ENST00000472585 CHMP4AQ9BY43 222 aa11.89□□□□□ -0.51
VCL-204ENST00000472585 PUS3Q9BZE2 481 aaKnown RBP11.89□□□□□ -0.51
VCL-204ENST00000472585 TDRD3Q9H7E2 651 aaKnown RBP11.89□□□□□ -0.51
VCL-204ENST00000472585 NR2E3Q9Y5X4 410 aa11.89□□□□□ -0.51
VCL-204ENST00000472585 FAM205AQ6ZU69 1335 aa11.88□□□□□ -0.51
VCL-204ENST00000472585 CCL15-CCL14A0A0B4J2E2 113 aa11.88□□□□□ -0.51
VCL-204ENST00000472585 GNRH1P01148 92 aa11.88□□□□□ -0.51
VCL-204ENST00000472585 GYG1P46976 350 aa11.88□□□□□ -0.51
VCL-204ENST00000472585 GTF2A2P52657 109 aa11.88□□□□□ -0.51
VCL-204ENST00000472585 RBM5P52756 815 aaKnown RBP eCLIP11.88□□□□□ -0.51
VCL-204ENST00000472585 IFIT5Q13325 482 aaKnown RBP11.88□□□□□ -0.51
VCL-204ENST00000472585 CCL15Q16663 113 aa11.88□□□□□ -0.51
VCL-204ENST00000472585 ZNF804AQ7Z570 1209 aa11.88□□□□□ -0.51
VCL-204ENST00000472585 FAM43AQ8N2R8 423 aa11.88□□□□□ -0.51
VCL-204ENST00000472585 KAZALD1Q96I82 304 aa11.88□□□□□ -0.51
VCL-204ENST00000472585 TMEM39BQ9GZU3 492 aa11.88□□□□□ -0.51
VCL-204ENST00000472585 MYH16Q9H6N6 1097 aa11.88□□□□□ -0.51
VCL-204ENST00000472585 OTOFQ9HC10 1997 aa11.88□□□□□ -0.51
VCL-204ENST00000472585 FANCIQ9NVI1 1328 aa11.87□□□□□ -0.51
VCL-204ENST00000472585 MNX1P50219 401 aaPredicted RBP11.87□□□□□ -0.51
VCL-204ENST00000472585 PRMT2P55345 433 aa11.87□□□□□ -0.51
VCL-204ENST00000472585 EXOSC9Q06265 439 aaKnown RBP11.87□□□□□ -0.51
VCL-204ENST00000472585 DZIP1LQ8IYY4 767 aaKnown RBP11.87□□□□□ -0.51
VCL-204ENST00000472585 TCP10L2B9ZVM9 353 aa11.86□□□□□ -0.51
VCL-204ENST00000472585 TNFAIP1Q13829 316 aa11.86□□□□□ -0.51
VCL-204ENST00000472585 VGLL4Q14135 290 aa11.86□□□□□ -0.51
VCL-204ENST00000472585 MFSD14BQ5SR56 506 aa11.86□□□□□ -0.51
VCL-204ENST00000472585 LDHAL6AQ6ZMR3 332 aa11.86□□□□□ -0.51
VCL-204ENST00000472585 ARHGAP39Q9C0H5 1083 aa11.86□□□□□ -0.51
VCL-204ENST00000472585 TTF2Q9UNY4 1162 aaKnown RBP11.86□□□□□ -0.51
VCL-204ENST00000472585 CHMP3Q9Y3E7 222 aa11.86□□□□□ -0.51
VCL-204ENST00000472585 CSADQ9Y600 493 aa11.86□□□□□ -0.51
VCL-204ENST00000472585 ZSWIM8A7E2V4 1837 aa11.86□□□□□ -0.51
VCL-204ENST00000472585 IL16Q14005 1332 aa11.86□□□□□ -0.51
VCL-204ENST00000472585 HOXD10P28358 340 aa11.85□□□□□ -0.51
VCL-204ENST00000472585 CTGFP29279 349 aa11.85□□□□□ -0.51
VCL-204ENST00000472585 CACNB3P54284 484 aa11.85□□□□□ -0.51
VCL-204ENST00000472585 MAP3K9P80192 1104 aa11.85□□□□□ -0.51
VCL-204ENST00000472585 LACTBP83111 547 aaPredicted RBP11.85□□□□□ -0.51
VCL-204ENST00000472585 FBXO33Q7Z6M2 555 aa11.85□□□□□ -0.51
VCL-204ENST00000472585 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.85□□□□□ -0.51
VCL-204ENST00000472585 BIN2Q9UBW5 565 aaPredicted RBP11.85□□□□□ -0.51
VCL-204ENST00000472585 SERPINA10Q9UK55 444 aa11.85□□□□□ -0.51
VCL-204ENST00000472585 IQSEC3Q9UPP2 1182 aaPredicted RBP11.85□□□□□ -0.51
VCL-204ENST00000472585 SALL2Q9Y467 1007 aaPredicted RBP11.85□□□□□ -0.51
VCL-204ENST00000472585 RIPOR2Q9Y4F9 1068 aa11.85□□□□□ -0.51
VCL-204ENST00000472585 A0A1W2PPC1 479 aa11.84□□□□□ -0.51
VCL-204ENST00000472585 GRM8O00222 908 aa11.84□□□□□ -0.51
VCL-204ENST00000472585 TLR2O60603 784 aa11.84□□□□□ -0.51
VCL-204ENST00000472585 ECM2O94769 699 aaPredicted RBP11.84□□□□□ -0.51
VCL-204ENST00000472585 HIBADHP31937 336 aaKnown RBP11.84□□□□□ -0.51
VCL-204ENST00000472585 CRKP46108 304 aa11.84□□□□□ -0.51
VCL-204ENST00000472585 MTFR1Q15390 333 aa11.84□□□□□ -0.51
VCL-204ENST00000472585 RAET1EQ8TD07 263 aa11.84□□□□□ -0.51
VCL-204ENST00000472585 SHISA4Q96DD7 197 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms