RNA–Protein interactions for RNA: ENST00000472398.5

TTC3-214, Transcript of tetratricopeptide repeat domain 3, human

TSL 1 (best)

Gene TTC3, Length 2,305 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC3-214	ENST00000472398	CDCA2	Q69YH5	1023 aa	Predicted RBP	3.85	□□□□□ -1.79
TTC3-214	ENST00000472398	IL31	Q6EBC2	164 aa		3.85	□□□□□ -1.79
TTC3-214	ENST00000472398	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	3.85	□□□□□ -1.79
TTC3-214	ENST00000472398	ANKRD42	Q8N9B4	389 aa		3.85	□□□□□ -1.79
TTC3-214	ENST00000472398	PPHLN1	Q8NEY8	458 aa	Known RBP	3.85	□□□□□ -1.79
TTC3-214	ENST00000472398	SH3TC2	Q8TF17	1288 aa		3.85	□□□□□ -1.79
TTC3-214	ENST00000472398	ZNF516	Q92618	1163 aa		3.85	□□□□□ -1.79
TTC3-214	ENST00000472398	SRPK1	Q96SB4	655 aa	Known RBP	3.85	□□□□□ -1.79
TTC3-214	ENST00000472398	VPS33B	Q9H267	617 aa		3.85	□□□□□ -1.79
TTC3-214	ENST00000472398	HOXC10	Q9NYD6	342 aa		3.85	□□□□□ -1.79
TTC3-214	ENST00000472398	ZIM2	Q9NZV7	527 aa		3.85	□□□□□ -1.79
TTC3-214	ENST00000472398	XPO7	Q9UIA9	1087 aa	Known RBP	3.85	□□□□□ -1.79
TTC3-214	ENST00000472398	SPG7	Q9UQ90	795 aa		3.85	□□□□□ -1.79
TTC3-214	ENST00000472398	EMILIN1	Q9Y6C2	1016 aa		3.85	□□□□□ -1.79
TTC3-214	ENST00000472398	GTPBP10	A4D1E9	387 aa	Known RBP	3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	PIK3CD	O00329	1044 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	KIF5C	O60282	957 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	IPO7	O95373	1038 aa	Known RBP	3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	XBP1	P17861	261 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	SERPINB3	P29508	390 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	STT3A	P46977	705 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	ST13	P50502	369 aa	Known RBP	3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	NEK3	P51956	506 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	PTPN5	P54829	565 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	KIAA2012	Q0VF49	1180 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	RASA3	Q14644	834 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	TAF1C	Q15572	869 aa	Predicted RBP	3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	PKN2	Q16513	984 aa	Known RBP	3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	ALF	Q53S48	1182 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	LCE2A	Q5TA79	106 aa	Predicted RBP	3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	C11orf74	Q86VG3	221 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	OR8H2	Q8N162	312 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	GIMAP8	Q8ND71	665 aa	Predicted RBP	3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	ARMC2	Q8NEN0	867 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	GIMAP1	Q8WWP7	306 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	HVCN1	Q96D96	273 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	SETDB2	Q96T68	719 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	NUDT12	Q9BQG2	462 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	PRDM9	Q9NQV7	894 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	SNTG2	Q9NY99	539 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	FKBPL	Q9UIM3	349 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	ITM2B	Q9Y287	266 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	ATP8A1	Q9Y2Q0	1164 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398		A0A0G2JS52	829 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	KLHL33	A6NCF5	533 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	SMTNL1	A8MU46	457 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398		H0Y3Z8	333 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	CTAGE5	O15320	804 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	TCEA3	O75764	348 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	CAPN2	P17655	700 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	ATP2B4	P23634	1241 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	SARS	P49591	514 aa	Known RBP	3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	HSD17B7	P56937	341 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	SNX16	P57768	344 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	GNL2	Q13823	731 aa	Known RBP	3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	TRIM29	Q14134	588 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	DCTN1	Q14203	1278 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	WDR45B	Q5MNZ6	344 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	KLHL10	Q6JEL2	608 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	PLBD1	Q6P4A8	553 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	RTL10	Q7L3V2	364 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	PNMA8A	Q86V59	439 aa	Predicted RBP	3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	IWS1	Q96ST2	819 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	FEZ1	Q99689	392 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	SLC6A16	Q9GZN6	736 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	ZNF700	Q9H0M5	742 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	MAP10	Q9P2G4	905 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	DCTN4	Q9UJW0	460 aa		3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	FBXO2	Q9UK22	296 aa	Predicted RBP	3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	MAGED1	Q9Y5V3	778 aa	Predicted RBP	3.84	□□□□□ -1.79
TTC3-214	ENST00000472398	CCDC85C	A6NKD9	419 aa		3.83	□□□□□ -1.8
TTC3-214	ENST00000472398	SLC27A2	O14975	620 aa		3.83	□□□□□ -1.8
TTC3-214	ENST00000472398	LZTS3	O60299	673 aa	Predicted RBP	3.83	□□□□□ -1.8
TTC3-214	ENST00000472398	CCDC172	P0C7W6	258 aa		3.83	□□□□□ -1.8
TTC3-214	ENST00000472398	HOXD10	P28358	340 aa		3.83	□□□□□ -1.8
TTC3-214	ENST00000472398	STIP1	P31948	543 aa	Known RBP	3.83	□□□□□ -1.8
TTC3-214	ENST00000472398	SFSWAP	Q12872	951 aa	Known RBP	3.83	□□□□□ -1.8
TTC3-214	ENST00000472398	NR1H3	Q13133	447 aa		3.83	□□□□□ -1.8
TTC3-214	ENST00000472398	PARP10	Q53GL7	1025 aa		3.83	□□□□□ -1.8
TTC3-214	ENST00000472398	HSP90B2P	Q58FF3	399 aa		3.83	□□□□□ -1.8
TTC3-214	ENST00000472398	TSHZ3	Q63HK5	1081 aa		3.83	□□□□□ -1.8
TTC3-214	ENST00000472398	PPP4R3A	Q6IN85	833 aa		3.83	□□□□□ -1.8
TTC3-214	ENST00000472398	OTUD6A	Q7L8S5	288 aa		3.83	□□□□□ -1.8
TTC3-214	ENST00000472398	BRSK2	Q8IWQ3	736 aa		3.83	□□□□□ -1.8
TTC3-214	ENST00000472398	CPXCR1	Q8N123	301 aa		3.83	□□□□□ -1.8
TTC3-214	ENST00000472398	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	3.83	□□□□□ -1.8
TTC3-214	ENST00000472398	SMCR8	Q8TEV9	937 aa	Predicted RBP	3.83	□□□□□ -1.8
TTC3-214	ENST00000472398	TIFA	Q96CG3	184 aa		3.83	□□□□□ -1.8
TTC3-214	ENST00000472398	NUDT16	Q96DE0	195 aa	Known RBP	3.83	□□□□□ -1.8
TTC3-214	ENST00000472398	SPAG5	Q96R06	1193 aa		3.83	□□□□□ -1.8
TTC3-214	ENST00000472398	EIF2AK1	Q9BQI3	630 aa	Known RBP	3.83	□□□□□ -1.8
TTC3-214	ENST00000472398	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	3.83	□□□□□ -1.8	2e-8	■■□□□ 11.8
TTC3-214	ENST00000472398	TRIM6	Q9C030	488 aa	Predicted RBP	3.83	□□□□□ -1.8
TTC3-214	ENST00000472398	METTL5	Q9NRN9	209 aa	Known RBP	3.83	□□□□□ -1.8
TTC3-214	ENST00000472398	CHCHD3	Q9NX63	227 aa	Known RBP	3.83	□□□□□ -1.8
TTC3-214	ENST00000472398	COBL	O75128	1261 aa		3.83	□□□□□ -1.8
TTC3-214	ENST00000472398	GYS1	P13807	737 aa		3.83	□□□□□ -1.8
TTC3-214	ENST00000472398	SMARCA1	P28370	1054 aa		3.83	□□□□□ -1.8

Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms