RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 WDR66Q8TBY9 1149 aa11.18□□□□□ -0.62
VPS52-216ENST00000471309 CNKSR1Q969H4 720 aa11.18□□□□□ -0.62
VPS52-216ENST00000471309 TMX3Q96JJ7 454 aa11.18□□□□□ -0.62
VPS52-216ENST00000471309 PDGFDQ9GZP0 370 aaPredicted RBP11.18□□□□□ -0.62
VPS52-216ENST00000471309 TMX4Q9H1E5 349 aaPredicted RBP11.18□□□□□ -0.62
VPS52-216ENST00000471309 ALDH8A1Q9H2A2 487 aaPredicted RBP11.18□□□□□ -0.62
VPS52-216ENST00000471309 PDRG1Q9NUG6 133 aa11.18□□□□□ -0.62
VPS52-216ENST00000471309 POLLQ9UGP5 575 aa11.18□□□□□ -0.62
VPS52-216ENST00000471309 CIZ1Q9ULV3 898 aaPredicted RBP11.18□□□□□ -0.62
VPS52-216ENST00000471309 TAF6LQ9Y6J9 622 aa11.18□□□□□ -0.62
VPS52-216ENST00000471309 SLX4Q8IY92 1834 aa11.18□□□□□ -0.62
VPS52-216ENST00000471309 SNED1Q8TER0 1413 aa11.18□□□□□ -0.62
VPS52-216ENST00000471309 CYP7A1P22680 504 aa11.17□□□□□ -0.62
VPS52-216ENST00000471309 CHAF1AQ13111 956 aaPredicted RBP11.17□□□□□ -0.62
VPS52-216ENST00000471309 ANKRD1Q15327 319 aa11.17□□□□□ -0.62
VPS52-216ENST00000471309 ALX1Q15699 326 aa11.17□□□□□ -0.62
VPS52-216ENST00000471309 SPTY2D1Q68D10 685 aaPredicted RBP11.17□□□□□ -0.62
VPS52-216ENST00000471309 NAA16Q6N069 864 aaPredicted RBP11.17□□□□□ -0.62
VPS52-216ENST00000471309 STOX1Q6ZVD7 989 aa11.17□□□□□ -0.62
VPS52-216ENST00000471309 SPRYD3Q8NCJ5 442 aa11.17□□□□□ -0.62
VPS52-216ENST00000471309 NSUN4Q96CB9 384 aaKnown RBP11.17□□□□□ -0.62
VPS52-216ENST00000471309 GPR101Q96P66 508 aaPredicted RBP11.17□□□□□ -0.62
VPS52-216ENST00000471309 NEK1Q96PY6 1258 aa11.17□□□□□ -0.62
VPS52-216ENST00000471309 CHMP5Q9NZZ3 219 aa11.17□□□□□ -0.62
VPS52-216ENST00000471309 LAMB1P07942 1786 aa11.17□□□□□ -0.62
VPS52-216ENST00000471309 CHD4Q14839 1912 aa11.17□□□□□ -0.62
VPS52-216ENST00000471309 PATL2C9JE40 543 aaKnown RBP11.16□□□□□ -0.62
VPS52-216ENST00000471309 E7EWF7 191 aa11.16□□□□□ -0.62
VPS52-216ENST00000471309 C6orf229H3BNL8 230 aa11.16□□□□□ -0.62
VPS52-216ENST00000471309 FGAP02671 866 aa11.16□□□□□ -0.62
VPS52-216ENST00000471309 CPA1P15085 419 aa11.16□□□□□ -0.62
VPS52-216ENST00000471309 MECOMQ03112 1051 aa11.16□□□□□ -0.62
VPS52-216ENST00000471309 TTLL5Q6EMB2 1281 aa11.16□□□□□ -0.62
VPS52-216ENST00000471309 DPP8Q6V1X1 898 aaPredicted RBP11.16□□□□□ -0.62
VPS52-216ENST00000471309 ADGRA1Q86SQ6 560 aa11.16□□□□□ -0.62
VPS52-216ENST00000471309 LCORLQ8N3X6 602 aa11.16□□□□□ -0.62
VPS52-216ENST00000471309 MPNDQ8N594 471 aa11.16□□□□□ -0.62
VPS52-216ENST00000471309 ZNF384Q8TF68 577 aa11.16□□□□□ -0.62
VPS52-216ENST00000471309 ZNF622Q969S3 477 aaKnown RBP eCLIP11.16□□□□□ -0.62
VPS52-216ENST00000471309 INTS4Q96HW7 963 aaKnown RBP11.16□□□□□ -0.62
VPS52-216ENST00000471309 COA1Q9GZY4 146 aa11.16□□□□□ -0.62
VPS52-216ENST00000471309 ARMT1Q9H993 441 aa11.16□□□□□ -0.62
VPS52-216ENST00000471309 CD209Q9NNX6 404 aa11.16□□□□□ -0.62
VPS52-216ENST00000471309 LIMCH1Q9UPQ0 1083 aa11.16□□□□□ -0.62
VPS52-216ENST00000471309 ZNF646O15015 1829 aaPredicted RBP11.16□□□□□ -0.62
VPS52-216ENST00000471309 FAM205AQ6ZU69 1335 aa11.15□□□□□ -0.62
VPS52-216ENST00000471309 MAGEB6P1A0A0J9YX57 407 aa11.15□□□□□ -0.62
VPS52-216ENST00000471309 PRDX5P30044 214 aa11.15□□□□□ -0.62
VPS52-216ENST00000471309 CHRNA5P30532 468 aa11.15□□□□□ -0.62
VPS52-216ENST00000471309 CC2D2BQ6DHV5 1058 aa11.15□□□□□ -0.62
VPS52-216ENST00000471309 IFNL3Q8IZI9 196 aa11.15□□□□□ -0.62
VPS52-216ENST00000471309 MIGA1Q8NAN2 632 aa11.15□□□□□ -0.62
VPS52-216ENST00000471309 ZSCAN31Q96LW9 406 aaPredicted RBP11.15□□□□□ -0.62
VPS52-216ENST00000471309 EYA3Q99504 573 aa11.15□□□□□ -0.62
VPS52-216ENST00000471309 RIOK1Q9BRS2 568 aaKnown RBP11.15□□□□□ -0.62
VPS52-216ENST00000471309 NACAP1Q9BZK3 213 aa11.15□□□□□ -0.62
VPS52-216ENST00000471309 CWC22Q9HCG8 908 aaKnown RBP11.15□□□□□ -0.62
VPS52-216ENST00000471309 EPB41L4AQ9HCS5 686 aaPredicted RBP11.15□□□□□ -0.62
VPS52-216ENST00000471309 A0A0G2JLW4 131 aa11.14□□□□□ -0.63
VPS52-216ENST00000471309 GSG1L2A8MUP6 293 aa11.14□□□□□ -0.63
VPS52-216ENST00000471309 ZNF213O14771 459 aa11.14□□□□□ -0.63
VPS52-216ENST00000471309 APPP05067 770 aa11.14□□□□□ -0.63
VPS52-216ENST00000471309 LDHBP07195 334 aaKnown RBP11.14□□□□□ -0.63
VPS52-216ENST00000471309 GSTO1P78417 241 aa11.14□□□□□ -0.63
VPS52-216ENST00000471309 NOL8Q76FK4 1167 aaKnown RBP11.14□□□□□ -0.63
VPS52-216ENST00000471309 DHX32Q7L7V1 743 aaKnown RBP11.14□□□□□ -0.63
VPS52-216ENST00000471309 DZIP1Q86YF9 867 aaKnown RBP11.14□□□□□ -0.63
VPS52-216ENST00000471309 TBC1D22AQ8WUA7 517 aa11.14□□□□□ -0.63
VPS52-216ENST00000471309 C7orf43Q8WVR3 580 aa11.14□□□□□ -0.63
VPS52-216ENST00000471309 RTFDC1Q9BY42 306 aaPredicted RBP11.14□□□□□ -0.63
VPS52-216ENST00000471309 ZC3H12CQ9C0D7 883 aaKnown RBP11.14□□□□□ -0.63
VPS52-216ENST00000471309 MTFR1LQ9H019 292 aa11.14□□□□□ -0.63
VPS52-216ENST00000471309 NAPBQ9H115 298 aa11.14□□□□□ -0.63
VPS52-216ENST00000471309 SH2B1Q9NRF2 756 aaPredicted RBP11.14□□□□□ -0.63
VPS52-216ENST00000471309 SLC4A4Q9Y6R1 1079 aa11.14□□□□□ -0.63
VPS52-216ENST00000471309 DDX60LQ5H9U9 1706 aaKnown RBP11.14□□□□□ -0.63
VPS52-216ENST00000471309 WDR19Q8NEZ3 1342 aa11.13□□□□□ -0.63
VPS52-216ENST00000471309 BRCA1P38398 1863 aaKnown RBP11.13□□□□□ -0.63
VPS52-216ENST00000471309 COL9A3Q14050 684 aaPredicted RBP11.13□□□□□ -0.63
VPS52-216ENST00000471309 TOB2Q14106 344 aaPredicted RBP11.13□□□□□ -0.63
VPS52-216ENST00000471309 GRIPAP1Q4V328 841 aa11.13□□□□□ -0.63
VPS52-216ENST00000471309 GIMAP6Q6P9H5 292 aa11.13□□□□□ -0.63
VPS52-216ENST00000471309 OLFM4Q6UX06 510 aa11.13□□□□□ -0.63
VPS52-216ENST00000471309 FBXL16Q8N461 479 aa11.13□□□□□ -0.63
VPS52-216ENST00000471309 AGXT2Q9BYV1 514 aa11.13□□□□□ -0.63
VPS52-216ENST00000471309 NBPF3Q9H094 633 aa11.13□□□□□ -0.63
VPS52-216ENST00000471309 JAG2Q9Y219 1238 aa11.13□□□□□ -0.63
VPS52-216ENST00000471309 NAV1Q8NEY1 1877 aa11.12□□□□□ -0.63
VPS52-216ENST00000471309 PRKAB2O43741 272 aa11.12□□□□□ -0.63
VPS52-216ENST00000471309 TDO2P48775 406 aa11.12□□□□□ -0.63
VPS52-216ENST00000471309 HAND2P61296 217 aa11.12□□□□□ -0.63
VPS52-216ENST00000471309 EXOSC10Q01780 885 aaKnown RBP11.12□□□□□ -0.63
VPS52-216ENST00000471309 RALYLQ86SE5 291 aaKnown RBP11.12□□□□□ -0.63
VPS52-216ENST00000471309 CERS3Q8IU89 383 aa11.12□□□□□ -0.63
VPS52-216ENST00000471309 TBC1D10CQ8IV04 446 aa11.12□□□□□ -0.63
VPS52-216ENST00000471309 MB21D2Q8IYB1 491 aaPredicted RBP11.12□□□□□ -0.63
VPS52-216ENST00000471309 NCOA7Q8NI08 942 aa11.12□□□□□ -0.63
VPS52-216ENST00000471309 SUGT1Q9Y2Z0 365 aa11.12□□□□□ -0.63
VPS52-216ENST00000471309 PSME4Q14997 1843 aa11.12□□□□□ -0.63
VPS52-216ENST00000471309 FOCADQ5VW36 1801 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms