RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 PTPRGP23470 1445 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 XIRP1Q702N8 1843 aaKnown RBP4.85□□□□□ -1.63
VPS50-210ENST00000471188 AATKQ6ZMQ8 1374 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 CASP8Q14790 479 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 ME3Q16798 604 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 PRPF40BQ6NWY9 871 aaKnown RBP4.85□□□□□ -1.63
VPS50-210ENST00000471188 TRIM65Q6PJ69 517 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 DHX40Q8IX18 779 aaKnown RBP4.85□□□□□ -1.63
VPS50-210ENST00000471188 OTUD6BQ8N6M0 293 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 ANKK1Q8NFD2 765 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 BCAS4Q8TDM0 211 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 ZSCAN31Q96LW9 406 aaPredicted RBP4.85□□□□□ -1.63
VPS50-210ENST00000471188 GDAP1L1Q96MZ0 367 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 CLIC6Q96NY7 704 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 SH2B1Q9NRF2 756 aaPredicted RBP4.85□□□□□ -1.63
VPS50-210ENST00000471188 MBIPQ9NS73 344 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 IRAK4Q9NWZ3 460 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 RABGEF1Q9UJ41 708 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 SAMM50Q9Y512 469 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 CFAP65Q6ZU64 1925 aaKnown RBP4.85□□□□□ -1.63
VPS50-210ENST00000471188 MYO1FO00160 1098 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 MAP2K7O14733 419 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 CTAGE5O15320 804 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 SKAP2O75563 359 aaPredicted RBP4.85□□□□□ -1.63
VPS50-210ENST00000471188 SSBP05455 408 aaKnown RBP eCLIP4.85□□□□□ -1.63
VPS50-210ENST00000471188 ARID4AP29374 1257 aaPredicted RBP4.85□□□□□ -1.63
VPS50-210ENST00000471188 ME1P48163 572 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 CDR1P51861 262 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 ACTN3Q08043 901 aaPredicted RBP4.85□□□□□ -1.63
VPS50-210ENST00000471188 BEND6Q5SZJ8 279 aaPredicted RBP4.85□□□□□ -1.63
VPS50-210ENST00000471188 LARP1Q6PKG0 1096 aaKnown RBP4.85□□□□□ -1.63
VPS50-210ENST00000471188 TICAM2Q86XR7 235 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 NUTM1Q86Y26 1132 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 TEX11Q8IYF3 940 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 ZFRQ96KR1 1074 aaKnown RBP4.85□□□□□ -1.63
VPS50-210ENST00000471188 TTC14Q96N46 770 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 PRAM1Q96QH2 718 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 TSKSQ9UJT2 592 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.85□□□□□ -1.63
VPS50-210ENST00000471188 CCDC9Q9Y3X0 531 aaKnown RBP4.85□□□□□ -1.63
VPS50-210ENST00000471188 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.85□□□□□ -1.63
VPS50-210ENST00000471188 SHPRHQ149N8 1683 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 TTC21BQ7Z4L5 1316 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 A0A1B0GUA9 196 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 TOP1P11387 765 aaKnown RBP4.84□□□□□ -1.63
VPS50-210ENST00000471188 ZKSCAN1P17029 563 aaPredicted RBP4.84□□□□□ -1.63
VPS50-210ENST00000471188 AKAP17AQ02040 695 aaKnown RBP4.84□□□□□ -1.63
VPS50-210ENST00000471188 KIF4BQ2VIQ3 1234 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 RNF187Q5TA31 235 aaPredicted RBP4.84□□□□□ -1.63
VPS50-210ENST00000471188 GBP3Q9H0R5 595 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 HYPKQ9NX55 129 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 PNMA3Q9UL41 463 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 PPP2R2CQ9Y2T4 447 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 MRFAP1Q9Y605 127 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 FAM135BQ49AJ0 1406 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 MAST1Q9Y2H9 1570 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 ZFYVE16Q7Z3T8 1539 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 CROCC2H7BZ55 1655 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 ERVK-7P63135 1459 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 CHUKO15111 745 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 FANCGO15287 622 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 RAB11FIP3O75154 756 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 RPSAP08865 295 aaKnown RBP4.84□□□□□ -1.63
VPS50-210ENST00000471188 GCFC2P16383 781 aaKnown RBP4.84□□□□□ -1.63
VPS50-210ENST00000471188 OSBPP22059 807 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 GBP2P32456 591 aaPredicted RBP4.84□□□□□ -1.63
VPS50-210ENST00000471188 IRX1P78414 480 aaPredicted RBP4.84□□□□□ -1.63
VPS50-210ENST00000471188 DCTN1Q14203 1278 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 HSP90AA4PQ58FG1 418 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 RBM43Q6ZSC3 357 aaKnown RBP4.84□□□□□ -1.63
VPS50-210ENST00000471188 RSRC2Q7L4I2 434 aaKnown RBP4.84□□□□□ -1.63
VPS50-210ENST00000471188 IQCA1Q86XH1 822 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 ANKRD18AQ8IVF6 992 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 FSIP1Q8NA03 581 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 TBC1D22AQ8WUA7 517 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 RIN2Q8WYP3 895 aaPredicted RBP4.84□□□□□ -1.63
VPS50-210ENST00000471188 FAXDC2Q96IV6 333 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 OSBPL3Q9H4L5 887 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 LZTFL1Q9NQ48 299 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 KCND1Q9NSA2 647 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 CFAP45Q9UL16 551 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 CLTCL1P53675 1640 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 PTCH1Q13635 1447 aa4.84□□□□□ -1.63
VPS50-210ENST00000471188 MSH6P52701 1360 aa4.84□□□□□ -1.64
VPS50-210ENST00000471188 F6X3S4 739 aa4.84□□□□□ -1.64
VPS50-210ENST00000471188 CAND2O75155 1236 aa4.84□□□□□ -1.64
VPS50-210ENST00000471188 GPTP24298 496 aa4.84□□□□□ -1.64
VPS50-210ENST00000471188 UBASH3AP57075 661 aa4.84□□□□□ -1.64
VPS50-210ENST00000471188 PSME1Q06323 249 aa4.84□□□□□ -1.64
VPS50-210ENST00000471188 SF3A1Q15459 793 aaKnown RBP4.84□□□□□ -1.64
VPS50-210ENST00000471188 ADCK5Q3MIX3 580 aa4.84□□□□□ -1.64
VPS50-210ENST00000471188 THSD4Q6ZMP0 1018 aa4.84□□□□□ -1.64
VPS50-210ENST00000471188 CEP112Q8N8E3 955 aa4.84□□□□□ -1.64
VPS50-210ENST00000471188 ARHGEF1Q92888 912 aaKnown RBP4.84□□□□□ -1.64
VPS50-210ENST00000471188 SCLT1Q96NL6 688 aa4.84□□□□□ -1.64
VPS50-210ENST00000471188 PNKPQ96T60 521 aa4.84□□□□□ -1.64
VPS50-210ENST00000471188 CRACR2AQ9BSW2 395 aa4.84□□□□□ -1.64
VPS50-210ENST00000471188 DESI2Q9BSY9 194 aa4.84□□□□□ -1.64
VPS50-210ENST00000471188 IRX2Q9BZI1 471 aaPredicted RBP4.84□□□□□ -1.64
VPS50-210ENST00000471188 SPATS2LQ9NUQ6 558 aaKnown RBP4.84□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms