RNA–Protein interactions for RNA: ENST00000470247.1

SREBF1-209, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 5

Gene SREBF1, Length 374 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-209	ENST00000470247	LDHB	P07195	334 aa	Known RBP	13.61	□□□□□ -0.23
SREBF1-209	ENST00000470247	NMI	Q13287	307 aa	Predicted RBP	13.61	□□□□□ -0.23
SREBF1-209	ENST00000470247	ADGRA1	Q86SQ6	560 aa		13.61	□□□□□ -0.23
SREBF1-209	ENST00000470247	OSBP2	Q969R2	916 aa		13.61	□□□□□ -0.23
SREBF1-209	ENST00000470247	SEC62	Q99442	399 aa	Known RBP	13.61	□□□□□ -0.23
SREBF1-209	ENST00000470247	RAI14	Q9P0K7	980 aa		13.61	□□□□□ -0.23
SREBF1-209	ENST00000470247	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.61	□□□□□ -0.23
SREBF1-209	ENST00000470247	PSME4	Q14997	1843 aa		13.61	□□□□□ -0.23
SREBF1-209	ENST00000470247	DOCK2	Q92608	1830 aa		13.61	□□□□□ -0.23
SREBF1-209	ENST00000470247	ZNF532	Q9HCE3	1301 aa		13.61	□□□□□ -0.23
SREBF1-209	ENST00000470247	ZFY	P08048	801 aa	Predicted RBP	13.6	□□□□□ -0.23
SREBF1-209	ENST00000470247	CYP7A1	P22680	504 aa		13.6	□□□□□ -0.23
SREBF1-209	ENST00000470247	EIF6	P56537	245 aa	Known RBP	13.6	□□□□□ -0.23
SREBF1-209	ENST00000470247	DIXDC1	Q155Q3	683 aa		13.6	□□□□□ -0.23
SREBF1-209	ENST00000470247	FAM163A	Q96GL9	167 aa	Predicted RBP	13.6	□□□□□ -0.23
SREBF1-209	ENST00000470247	MRI	Q9BWK5	157 aa		13.6	□□□□□ -0.23
SREBF1-209	ENST00000470247	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	13.6	□□□□□ -0.23	2e-10	■■■■□ 19.7
SREBF1-209	ENST00000470247	PUS7L	Q9H0K6	701 aa	Known RBP	13.6	□□□□□ -0.23
SREBF1-209	ENST00000470247		F8W031	263 aa	Predicted RBP	13.59	□□□□□ -0.23
SREBF1-209	ENST00000470247	HIP1	O00291	1037 aa		13.59	□□□□□ -0.23
SREBF1-209	ENST00000470247	TNIP1	Q15025	636 aa		13.59	□□□□□ -0.23
SREBF1-209	ENST00000470247	NAA16	Q6N069	864 aa	Predicted RBP	13.59	□□□□□ -0.23
SREBF1-209	ENST00000470247	ZSCAN25	Q6NSZ9	544 aa		13.59	□□□□□ -0.23
SREBF1-209	ENST00000470247	CWC27	Q6UX04	472 aa	Known RBP	13.59	□□□□□ -0.23
SREBF1-209	ENST00000470247	KIAA0825	Q8IV33	1275 aa		13.59	□□□□□ -0.23
SREBF1-209	ENST00000470247	AGBL3	Q8NEM8	1001 aa		13.59	□□□□□ -0.23
SREBF1-209	ENST00000470247	APPBP2	Q92624	585 aa		13.59	□□□□□ -0.23
SREBF1-209	ENST00000470247	HELLS	Q9NRZ9	838 aa		13.59	□□□□□ -0.23
SREBF1-209	ENST00000470247	TTF2	Q9UNY4	1162 aa	Known RBP	13.59	□□□□□ -0.23
SREBF1-209	ENST00000470247	GAK	O14976	1311 aa		13.59	□□□□□ -0.23
SREBF1-209	ENST00000470247	SHTN1	A0MZ66	631 aa		13.58	□□□□□ -0.24
SREBF1-209	ENST00000470247		M0R2C6	588 aa		13.58	□□□□□ -0.24
SREBF1-209	ENST00000470247	SGSM2	O43147	1006 aa		13.58	□□□□□ -0.24
SREBF1-209	ENST00000470247	SEC24B	O95487	1268 aa		13.58	□□□□□ -0.24
SREBF1-209	ENST00000470247	SCNN1D	P51172	638 aa		13.58	□□□□□ -0.24
SREBF1-209	ENST00000470247	HDLBP	Q00341	1268 aa	Known RBP	13.58	□□□□□ -0.24
SREBF1-209	ENST00000470247	LRRFIP1	Q32MZ4	808 aa	Known RBP	13.58	□□□□□ -0.24
SREBF1-209	ENST00000470247	TMED8	Q6PL24	325 aa	Predicted RBP	13.58	□□□□□ -0.24
SREBF1-209	ENST00000470247	ZNF589	Q86UQ0	364 aa	Predicted RBP	13.58	□□□□□ -0.24
SREBF1-209	ENST00000470247	DPF2	Q92785	391 aa		13.58	□□□□□ -0.24
SREBF1-209	ENST00000470247	RIOK1	Q9BRS2	568 aa	Known RBP	13.58	□□□□□ -0.24
SREBF1-209	ENST00000470247	ESYT1	Q9BSJ8	1104 aa		13.58	□□□□□ -0.24
SREBF1-209	ENST00000470247	DIAPH3	Q9NSV4	1193 aa		13.58	□□□□□ -0.24
SREBF1-209	ENST00000470247	PCDHAC2	Q9Y5I4	1007 aa		13.58	□□□□□ -0.24
SREBF1-209	ENST00000470247	MYO3B	Q8WXR4	1341 aa		13.58	□□□□□ -0.24
SREBF1-209	ENST00000470247	AK9	Q5TCS8	1911 aa		13.57	□□□□□ -0.24
SREBF1-209	ENST00000470247	GPR75-ASB3	A0A0A6YYF3	556 aa		13.57	□□□□□ -0.24
SREBF1-209	ENST00000470247	DDN	O94850	711 aa	Predicted RBP	13.57	□□□□□ -0.24
SREBF1-209	ENST00000470247	RPS12	P25398	132 aa	Known RBP	13.57	□□□□□ -0.24
SREBF1-209	ENST00000470247	GMPS	P49915	693 aa	Predicted RBP	13.57	□□□□□ -0.24
SREBF1-209	ENST00000470247	ZNF280A	P59817	542 aa	Predicted RBP	13.57	□□□□□ -0.24
SREBF1-209	ENST00000470247	PPP4C	P60510	307 aa		13.57	□□□□□ -0.24
SREBF1-209	ENST00000470247	MCMDC2	Q4G0Z9	681 aa		13.57	□□□□□ -0.24
SREBF1-209	ENST00000470247	APOBEC3H	Q6NTF7	200 aa	Known RBP	13.57	□□□□□ -0.24
SREBF1-209	ENST00000470247	HHIPL2	Q6UWX4	724 aa		13.57	□□□□□ -0.24
SREBF1-209	ENST00000470247	CCDC129	Q6ZRS4	1044 aa		13.57	□□□□□ -0.24
SREBF1-209	ENST00000470247	DZIP1	Q86YF9	867 aa	Known RBP	13.57	□□□□□ -0.24
SREBF1-209	ENST00000470247	BACH2	Q9BYV9	841 aa		13.57	□□□□□ -0.24
SREBF1-209	ENST00000470247	DAGLA	Q9Y4D2	1042 aa		13.57	□□□□□ -0.24
SREBF1-209	ENST00000470247	GJA3	Q9Y6H8	435 aa		13.57	□□□□□ -0.24
SREBF1-209	ENST00000470247	MAST3	O60307	1309 aa		13.57	□□□□□ -0.24
SREBF1-209	ENST00000470247	FOXP2	O15409	715 aa		13.56	□□□□□ -0.24
SREBF1-209	ENST00000470247	LDHC	P07864	332 aa		13.56	□□□□□ -0.24
SREBF1-209	ENST00000470247	USP17L8	P0C7I0	530 aa		13.56	□□□□□ -0.24
SREBF1-209	ENST00000470247	CRK	P46108	304 aa		13.56	□□□□□ -0.24
SREBF1-209	ENST00000470247	DYNLL1	P63167	89 aa	Known RBP	13.56	□□□□□ -0.24
SREBF1-209	ENST00000470247	GSTO1	P78417	241 aa		13.56	□□□□□ -0.24
SREBF1-209	ENST00000470247	GPC2	Q8N158	579 aa		13.56	□□□□□ -0.24
SREBF1-209	ENST00000470247	MIGA1	Q8NAN2	632 aa		13.56	□□□□□ -0.24
SREBF1-209	ENST00000470247	ZBED3	Q96IU2	234 aa	Predicted RBP	13.56	□□□□□ -0.24
SREBF1-209	ENST00000470247	STRBP	Q96SI9	672 aa	Known RBP	13.56	□□□□□ -0.24
SREBF1-209	ENST00000470247	MROH7-TTC4	A0A0A0MT08	1334 aa		13.56	□□□□□ -0.24
SREBF1-209	ENST00000470247	ZC3H4	Q9UPT8	1303 aa	Known RBP	13.56	□□□□□ -0.24
SREBF1-209	ENST00000470247	MYH7	P12883	1935 aa		13.56	□□□□□ -0.24
SREBF1-209	ENST00000470247	RHBDL3	P58872	404 aa		13.55	□□□□□ -0.24
SREBF1-209	ENST00000470247	LCORL	Q8N3X6	602 aa		13.55	□□□□□ -0.24
SREBF1-209	ENST00000470247	RUFY2	Q8WXA3	655 aa		13.55	□□□□□ -0.24
SREBF1-209	ENST00000470247	ZDHHC15	Q96MV8	337 aa		13.55	□□□□□ -0.24
SREBF1-209	ENST00000470247	SERPINA10	Q9UK55	444 aa		13.55	□□□□□ -0.24
SREBF1-209	ENST00000470247	RAD50	Q92878	1312 aa		13.55	□□□□□ -0.24
SREBF1-209	ENST00000470247	MAGEB6P1	A0A0J9YX57	407 aa		13.54	□□□□□ -0.24
SREBF1-209	ENST00000470247	GPAA1	O43292	621 aa		13.54	□□□□□ -0.24
SREBF1-209	ENST00000470247	MBD4	O95243	580 aa		13.54	□□□□□ -0.24
SREBF1-209	ENST00000470247	CFAP100	Q494V2	611 aa		13.54	□□□□□ -0.24
SREBF1-209	ENST00000470247	VPS53	Q5VIR6	699 aa		13.54	□□□□□ -0.24
SREBF1-209	ENST00000470247	SLF2	Q8IX21	1173 aa		13.54	□□□□□ -0.24
SREBF1-209	ENST00000470247	MTMR14	Q8NCE2	650 aa		13.54	□□□□□ -0.24
SREBF1-209	ENST00000470247	TEKT1	Q969V4	418 aa		13.54	□□□□□ -0.24
SREBF1-209	ENST00000470247	PRMT6	Q96LA8	375 aa	Predicted RBP	13.54	□□□□□ -0.24
SREBF1-209	ENST00000470247	LSG1	Q9H089	658 aa	Known RBP	13.54	□□□□□ -0.24
SREBF1-209	ENST00000470247	ARMT1	Q9H993	441 aa		13.54	□□□□□ -0.24
SREBF1-209	ENST00000470247	AATF	Q9NY61	560 aa	Known RBP eCLIP	13.54	□□□□□ -0.24
SREBF1-209	ENST00000470247	CNOT7	Q9UIV1	285 aa	Known RBP	13.54	□□□□□ -0.24
SREBF1-209	ENST00000470247	CCDC171	Q6TFL3	1326 aa		13.54	□□□□□ -0.24
SREBF1-209	ENST00000470247	MYH2	Q9UKX2	1941 aa		13.53	□□□□□ -0.24
SREBF1-209	ENST00000470247	GLTPD2	A6NH11	291 aa		13.53	□□□□□ -0.24
SREBF1-209	ENST00000470247	PRKAB2	O43741	272 aa		13.53	□□□□□ -0.24
SREBF1-209	ENST00000470247	EGFR	P00533	1210 aa		13.53	□□□□□ -0.24
SREBF1-209	ENST00000470247	BTD	P43251	543 aa		13.53	□□□□□ -0.24
SREBF1-209	ENST00000470247	MMP14	P50281	582 aa		13.53	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms