RNA–Protein interactions for RNA: ENST00000469415.1

MCF2L-221, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best)

Gene MCF2L, Length 3,027 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-221ENST00000469415 PDE8AO60658 829 aa20.82■□□□□ 0.92
MCF2L-221ENST00000469415 SLC4A8Q2Y0W8 1093 aa20.82■□□□□ 0.92
MCF2L-221ENST00000469415 SYNE3Q6ZMZ3 975 aa20.82■□□□□ 0.92
MCF2L-221ENST00000469415 PIBF1Q8WXW3 757 aa20.82■□□□□ 0.92
MCF2L-221ENST00000469415 NIP7Q9Y221 180 aaKnown RBP eCLIP20.82■□□□□ 0.92
MCF2L-221ENST00000469415 KDM4FA0A1W2PPD8 638 aa20.81■□□□□ 0.92
MCF2L-221ENST00000469415 KCNQ2O43526 872 aa20.81■□□□□ 0.92
MCF2L-221ENST00000469415 NDUFA8P51970 172 aa20.81■□□□□ 0.92
MCF2L-221ENST00000469415 RASGRF1Q13972 1273 aa20.81■□□□□ 0.92
MCF2L-221ENST00000469415 RCOR1Q9UKL0 485 aa20.81■□□□□ 0.92
MCF2L-221ENST00000469415 JAG2Q9Y219 1238 aa20.81■□□□□ 0.92
MCF2L-221ENST00000469415 METAP2P50579 478 aaKnown RBP eCLIP20.8■□□□□ 0.92
MCF2L-221ENST00000469415 SPECC1Q5M775 1068 aa20.8■□□□□ 0.92
MCF2L-221ENST00000469415 RFX7Q2KHR2 1363 aa20.8■□□□□ 0.92
MCF2L-221ENST00000469415 CDC27P30260 824 aa20.8■□□□□ 0.92
MCF2L-221ENST00000469415 NAPBQ9H115 298 aa20.8■□□□□ 0.92
MCF2L-221ENST00000469415 CLIP2Q9UDT6 1046 aa20.8■□□□□ 0.92
MCF2L-221ENST00000469415 GLI3P10071 1580 aa20.8■□□□□ 0.92
MCF2L-221ENST00000469415 NEDD4P46934 1319 aa20.8■□□□□ 0.92
MCF2L-221ENST00000469415 GOLGB1Q14789 3259 aaKnown RBP20.8■□□□□ 0.92
MCF2L-221ENST00000469415 C16orf45Q96MC5 204 aaPredicted RBP20.8■□□□□ 0.92
MCF2L-221ENST00000469415 ALG1Q9BT22 464 aa20.8■□□□□ 0.92
MCF2L-221ENST00000469415 AGXT2Q9BYV1 514 aa20.8■□□□□ 0.92
MCF2L-221ENST00000469415 MINDY4BA8MYZ0 360 aa20.79■□□□□ 0.92
MCF2L-221ENST00000469415 ZRSR1Q15695 479 aaKnown RBP20.79■□□□□ 0.92
MCF2L-221ENST00000469415 PTPN21Q16825 1174 aa20.79■□□□□ 0.92
MCF2L-221ENST00000469415 LRP2BPQ9P2M1 347 aa20.79■□□□□ 0.92
MCF2L-221ENST00000469415 RIC1Q4ADV7 1423 aa20.79■□□□□ 0.92
MCF2L-221ENST00000469415 CRKLP46109 303 aaKnown RBP20.79■□□□□ 0.92
MCF2L-221ENST00000469415 PIP4K2BP78356 416 aa20.79■□□□□ 0.92
MCF2L-221ENST00000469415 SNW1Q13573 536 aaKnown RBP20.79■□□□□ 0.92
MCF2L-221ENST00000469415 TMEM67Q5HYA8 995 aa20.79■□□□□ 0.92
MCF2L-221ENST00000469415 AOPEPQ8N6M6 819 aa20.79■□□□□ 0.92
MCF2L-221ENST00000469415 SPATA5Q8NB90 893 aa20.79■□□□□ 0.92
MCF2L-221ENST00000469415 NUP133Q8WUM0 1156 aa20.79■□□□□ 0.92
MCF2L-221ENST00000469415 GOLGA6L6A8MZA4 724 aa20.78■□□□□ 0.92
MCF2L-221ENST00000469415 TDO2P48775 406 aa20.78■□□□□ 0.92
MCF2L-221ENST00000469415 DDB1Q16531 1140 aa20.78■□□□□ 0.92
MCF2L-221ENST00000469415 CCDC144BQ3MJ40 725 aa20.78■□□□□ 0.92
MCF2L-221ENST00000469415 ZNF592Q92610 1267 aa20.78■□□□□ 0.92
MCF2L-221ENST00000469415 hCG_1642624A0A1W2PR95 340 aa20.78■□□□□ 0.92
MCF2L-221ENST00000469415 IFIT3O14879 490 aaKnown RBP20.78■□□□□ 0.92
MCF2L-221ENST00000469415 PDIA4P13667 645 aaKnown RBP20.78■□□□□ 0.92
MCF2L-221ENST00000469415 ZNF75DP51815 510 aa20.78■□□□□ 0.92
MCF2L-221ENST00000469415 FAM182BQ5T319 152 aa20.78■□□□□ 0.92
MCF2L-221ENST00000469415 FBXO18Q8NFZ0 1043 aa20.78■□□□□ 0.92
MCF2L-221ENST00000469415 HSP90AA4PQ58FG1 418 aa20.78■□□□□ 0.92
MCF2L-221ENST00000469415 SLC26A6Q9BXS9 759 aa20.78■□□□□ 0.92
MCF2L-221ENST00000469415 PKD1L3Q7Z443 1732 aa20.77■□□□□ 0.92
MCF2L-221ENST00000469415 GTF2E1P29083 439 aaPredicted RBP20.77■□□□□ 0.92
MCF2L-221ENST00000469415 PUM3Q15397 648 aaKnown RBP20.77■□□□□ 0.92
MCF2L-221ENST00000469415 VGLL2Q8N8G2 317 aa20.77■□□□□ 0.92
MCF2L-221ENST00000469415 SDR42E1Q8WUS8 393 aa20.77■□□□□ 0.92
MCF2L-221ENST00000469415 ANGEL1Q9UNK9 670 aaKnown RBP20.77■□□□□ 0.92
MCF2L-221ENST00000469415 DHX16O60231 1041 aaKnown RBP20.77■□□□□ 0.91
MCF2L-221ENST00000469415 FAM160A1Q05DH4 1040 aa20.77■□□□□ 0.91
MCF2L-221ENST00000469415 SALL1Q9NSC2 1324 aa20.77■□□□□ 0.91
MCF2L-221ENST00000469415 TNS2Q63HR2 1409 aa20.76■□□□□ 0.91
MCF2L-221ENST00000469415 SPTLC2O15270 562 aa20.76■□□□□ 0.91
MCF2L-221ENST00000469415 MYSM1Q5VVJ2 828 aa20.76■□□□□ 0.91
MCF2L-221ENST00000469415 MRPS27Q92552 414 aaKnown RBP20.76■□□□□ 0.91
MCF2L-221ENST00000469415 CLIC6Q96NY7 704 aa20.76■□□□□ 0.91
MCF2L-221ENST00000469415 PLA2G12BQ9BX93 195 aa20.76■□□□□ 0.91
MCF2L-221ENST00000469415 GYG1P46976 350 aa20.76■□□□□ 0.91
MCF2L-221ENST00000469415 LCORLQ8N3X6 602 aa20.76■□□□□ 0.91
MCF2L-221ENST00000469415 EPB41L4AQ9HCS5 686 aaPredicted RBP20.76■□□□□ 0.91
MCF2L-221ENST00000469415 GOLGA8AA7E2F4 631 aa20.75■□□□□ 0.91
MCF2L-221ENST00000469415 ITPK1Q13572 414 aa20.75■□□□□ 0.91
MCF2L-221ENST00000469415 ZSCAN25Q6NSZ9 544 aa20.75■□□□□ 0.91
MCF2L-221ENST00000469415 LINC00301Q8NCQ3 95 aa20.75■□□□□ 0.91
MCF2L-221ENST00000469415 KIAA1524Q8TCG1 905 aa20.75■□□□□ 0.91
MCF2L-221ENST00000469415 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.75■□□□□ 0.91
MCF2L-221ENST00000469415 LPIN2Q92539 896 aa20.75■□□□□ 0.91
MCF2L-221ENST00000469415 STRBPQ96SI9 672 aaKnown RBP20.75■□□□□ 0.91
MCF2L-221ENST00000469415 ZSWIM5Q9P217 1185 aa20.75■□□□□ 0.91
MCF2L-221ENST00000469415 SLC4A4Q9Y6R1 1079 aa20.75■□□□□ 0.91
MCF2L-221ENST00000469415 LMTK3Q96Q04 1460 aa20.75■□□□□ 0.91
MCF2L-221ENST00000469415 PRDM1O75626 825 aa20.75■□□□□ 0.91
MCF2L-221ENST00000469415 SLC5A1P13866 664 aa20.75■□□□□ 0.91
MCF2L-221ENST00000469415 UTP14AQ9BVJ6 771 aaKnown RBP20.75■□□□□ 0.91
MCF2L-221ENST00000469415 KCNJ14Q9UNX9 436 aa20.75■□□□□ 0.91
MCF2L-221ENST00000469415 IFNL3Q8IZI9 196 aa20.75■□□□□ 0.91
MCF2L-221ENST00000469415 CACTINQ8WUQ7 758 aaKnown RBP20.75■□□□□ 0.91
MCF2L-221ENST00000469415 RAI14Q9P0K7 980 aa20.75■□□□□ 0.91
MCF2L-221ENST00000469415 TACC3Q9Y6A5 838 aa20.75■□□□□ 0.91
MCF2L-221ENST00000469415 CYP2D7A0A087X1C5 515 aa20.74■□□□□ 0.91
MCF2L-221ENST00000469415 ZBTB43O43298 467 aa20.74■□□□□ 0.91
MCF2L-221ENST00000469415 MAP3K12Q12852 859 aa20.74■□□□□ 0.91
MCF2L-221ENST00000469415 DPCR1Q3MIW9 517 aa20.74■□□□□ 0.91
MCF2L-221ENST00000469415 KRT40Q6A162 431 aa20.74■□□□□ 0.91
MCF2L-221ENST00000469415 APOA5Q6Q788 366 aa20.74■□□□□ 0.91
MCF2L-221ENST00000469415 TRMT1Q9NXH9 659 aaKnown RBP20.74■□□□□ 0.91
MCF2L-221ENST00000469415 LOC102724428A0A0B4J2F2 783 aa20.74■□□□□ 0.91
MCF2L-221ENST00000469415 SIK1P57059 783 aa20.74■□□□□ 0.91
MCF2L-221ENST00000469415 CCDC87Q9NVE4 849 aa20.74■□□□□ 0.91
MCF2L-221ENST00000469415 IL6STP40189 918 aaPredicted RBP20.73■□□□□ 0.91
MCF2L-221ENST00000469415 TTF1Q15361 905 aaPredicted RBP20.73■□□□□ 0.91
MCF2L-221ENST00000469415 STX1AQ16623 288 aa20.73■□□□□ 0.91
MCF2L-221ENST00000469415 VPS37DQ86XT2 251 aa20.73■□□□□ 0.91
MCF2L-221ENST00000469415 GUCY1A2P33402 732 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms