RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 MYO1BO43795 1136 aa16.09■□□□□ 0.17
COL28A1-206ENST00000465339 HDLBPQ00341 1268 aaKnown RBP16.09■□□□□ 0.17
COL28A1-206ENST00000465339 CFAP100Q494V2 611 aa16.09■□□□□ 0.17
COL28A1-206ENST00000465339 CCDC102BQ68D86 513 aa16.09■□□□□ 0.17
COL28A1-206ENST00000465339 JMYQ8N9B5 988 aa16.09■□□□□ 0.17
COL28A1-206ENST00000465339 XAGE2Q96GT9 111 aa16.09■□□□□ 0.17
COL28A1-206ENST00000465339 NEUROD6Q96NK8 337 aa16.09■□□□□ 0.17
COL28A1-206ENST00000465339 MRIQ9BWK5 157 aa16.09■□□□□ 0.17
COL28A1-206ENST00000465339 ZNF408Q9H9D4 720 aa16.09■□□□□ 0.17
COL28A1-206ENST00000465339 MKRN1Q9UHC7 482 aaKnown RBP16.09■□□□□ 0.17
COL28A1-206ENST00000465339 SERPINA10Q9UK55 444 aa16.09■□□□□ 0.17
COL28A1-206ENST00000465339 DENND2AQ9ULE3 1009 aa16.09■□□□□ 0.17
COL28A1-206ENST00000465339 FARP1Q9Y4F1 1045 aaPredicted RBP16.09■□□□□ 0.17
COL28A1-206ENST00000465339 TLL2Q9Y6L7 1015 aa16.09■□□□□ 0.17
COL28A1-206ENST00000465339 CNTNAP1P78357 1384 aa16.09■□□□□ 0.17
COL28A1-206ENST00000465339 ADORA1P30542 326 aa16.08■□□□□ 0.16
COL28A1-206ENST00000465339 PHKA1P46020 1223 aa16.08■□□□□ 0.16
COL28A1-206ENST00000465339 RBM5P52756 815 aaKnown RBP eCLIP16.08■□□□□ 0.16
COL28A1-206ENST00000465339 C20orf194Q5TEA3 1177 aa16.08■□□□□ 0.16
COL28A1-206ENST00000465339 APOBEC3FQ8IUX4 373 aaKnown RBP16.08■□□□□ 0.16
COL28A1-206ENST00000465339 PRMT6Q96LA8 375 aaPredicted RBP16.08■□□□□ 0.16
COL28A1-206ENST00000465339 HMMRO75330 724 aa16.07■□□□□ 0.16
COL28A1-206ENST00000465339 HSP90AB4PQ58FF6 505 aa16.07■□□□□ 0.16
COL28A1-206ENST00000465339 GORABQ5T7V8 394 aa16.07■□□□□ 0.16
COL28A1-206ENST00000465339 DLK2Q6UY11 383 aa16.07■□□□□ 0.16
COL28A1-206ENST00000465339 SAPCD2Q86UD0 394 aa16.07■□□□□ 0.16
COL28A1-206ENST00000465339 C2orf69Q8N8R5 385 aa16.07■□□□□ 0.16
COL28A1-206ENST00000465339 CDCA5Q96FF9 252 aa16.07■□□□□ 0.16
COL28A1-206ENST00000465339 HHIPL1Q96JK4 782 aa16.07■□□□□ 0.16
COL28A1-206ENST00000465339 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.07■□□□□ 0.16
COL28A1-206ENST00000465339 MAST3O60307 1309 aa16.07■□□□□ 0.16
COL28A1-206ENST00000465339 PDS5AQ29RF7 1337 aaKnown RBP16.06■□□□□ 0.16
COL28A1-206ENST00000465339 SALL1Q9NSC2 1324 aa16.06■□□□□ 0.16
COL28A1-206ENST00000465339 ERC1Q8IUD2 1116 aa16.06■□□□□ 0.16
COL28A1-206ENST00000465339 PLCD3Q8N3E9 789 aa16.06■□□□□ 0.16
COL28A1-206ENST00000465339 CRKP46108 304 aa16.05■□□□□ 0.16
COL28A1-206ENST00000465339 VEGFBP49765 207 aa16.05■□□□□ 0.16
COL28A1-206ENST00000465339 GRIK5Q16478 980 aa16.05■□□□□ 0.16
COL28A1-206ENST00000465339 ZGPATQ8N5A5 531 aaKnown RBP16.05■□□□□ 0.16
COL28A1-206ENST00000465339 TEKT1Q969V4 418 aa16.05■□□□□ 0.16
COL28A1-206ENST00000465339 GBA2Q9HCG7 927 aaPredicted RBP16.05■□□□□ 0.16
COL28A1-206ENST00000465339 ECE1P42892 770 aa16.04■□□□□ 0.16
COL28A1-206ENST00000465339 FKBP1BP68106 108 aa16.04■□□□□ 0.16
COL28A1-206ENST00000465339 TNNI3KQ59H18 835 aa16.04■□□□□ 0.16
COL28A1-206ENST00000465339 HHIPL2Q6UWX4 724 aa16.04■□□□□ 0.16
COL28A1-206ENST00000465339 PCDHAC2Q9Y5I4 1007 aa16.04■□□□□ 0.16
COL28A1-206ENST00000465339 PPP2R3BQ9Y5P8 575 aa16.04■□□□□ 0.16
COL28A1-206ENST00000465339 FPGT-TNNI3KV9GXZ4 949 aa16.04■□□□□ 0.16
COL28A1-206ENST00000465339 COL1A1P02452 1464 aaPredicted RBP16.03■□□□□ 0.16
COL28A1-206ENST00000465339 LDHBP07195 334 aaKnown RBP16.03■□□□□ 0.16
COL28A1-206ENST00000465339 UQCRFS1P1P0C7P4 283 aa16.03■□□□□ 0.16
COL28A1-206ENST00000465339 NF2P35240 595 aa16.03■□□□□ 0.16
COL28A1-206ENST00000465339 RASGRF1Q13972 1273 aa16.03■□□□□ 0.16
COL28A1-206ENST00000465339 CCDC158Q5M9N0 1113 aa16.03■□□□□ 0.16
COL28A1-206ENST00000465339 SIRT2Q8IXJ6 389 aa16.03■□□□□ 0.16
COL28A1-206ENST00000465339 ZDHHC15Q96MV8 337 aa16.03■□□□□ 0.16
COL28A1-206ENST00000465339 DEFB129Q9H1M3 183 aa16.03■□□□□ 0.16
COL28A1-206ENST00000465339 ZNF70Q9UC06 446 aaPredicted RBP16.03■□□□□ 0.16
COL28A1-206ENST00000465339 SCAF8Q9UPN6 1271 aaKnown RBP16.03■□□□□ 0.16
COL28A1-206ENST00000465339 WDR33Q9C0J8 1336 aaKnown RBP16.02■□□□□ 0.16
COL28A1-206ENST00000465339 CLRN2A0PK11 232 aa16.02■□□□□ 0.16
COL28A1-206ENST00000465339 ARID4AP29374 1257 aaPredicted RBP16.02■□□□□ 0.16
COL28A1-206ENST00000465339 RRP1P56182 461 aaKnown RBP16.02■□□□□ 0.16
COL28A1-206ENST00000465339 HUNKP57058 714 aa16.02■□□□□ 0.16
COL28A1-206ENST00000465339 TNFAIP1Q13829 316 aa16.02■□□□□ 0.16
COL28A1-206ENST00000465339 SPTY2D1Q68D10 685 aaPredicted RBP16.02■□□□□ 0.16
COL28A1-206ENST00000465339 PAXIP1Q6ZW49 1069 aaPredicted RBP16.02■□□□□ 0.16
COL28A1-206ENST00000465339 TDRD3Q9H7E2 651 aaKnown RBP16.02■□□□□ 0.16
COL28A1-206ENST00000465339 EXOC6BQ9Y2D4 811 aa16.02■□□□□ 0.16
COL28A1-206ENST00000465339 HAX1O00165 279 aa16.01■□□□□ 0.15
COL28A1-206ENST00000465339 PRDX5P30044 214 aa16.01■□□□□ 0.15
COL28A1-206ENST00000465339 VASPP50552 380 aaPredicted RBP16.01■□□□□ 0.15
COL28A1-206ENST00000465339 PRAMEF18Q5VWM3 479 aa16.01■□□□□ 0.15
COL28A1-206ENST00000465339 SPATA5Q8NB90 893 aa16.01■□□□□ 0.15
COL28A1-206ENST00000465339 ZNF512BQ96KM6 892 aaPredicted RBP16.01■□□□□ 0.15
COL28A1-206ENST00000465339 CAPNS2Q96L46 248 aa16.01■□□□□ 0.15
COL28A1-206ENST00000465339 VEZTQ9HBM0 779 aa16.01■□□□□ 0.15
COL28A1-206ENST00000465339 HMG20BQ9P0W2 317 aa16.01■□□□□ 0.15
COL28A1-206ENST00000465339 RAB11FIP3O75154 756 aa16■□□□□ 0.15
COL28A1-206ENST00000465339 TNNI2P48788 182 aa16■□□□□ 0.15
COL28A1-206ENST00000465339 MNX1P50219 401 aaPredicted RBP16■□□□□ 0.15
COL28A1-206ENST00000465339 SUPT20HL1Q3ZLR7 823 aa16■□□□□ 0.15
COL28A1-206ENST00000465339 CYP4F22Q6NT55 531 aa16■□□□□ 0.15
COL28A1-206ENST00000465339 SLF2Q8IX21 1173 aa16■□□□□ 0.15
COL28A1-206ENST00000465339 RHPN1Q8TCX5 695 aa16■□□□□ 0.15
COL28A1-206ENST00000465339 EAF2Q96CJ1 260 aaPredicted RBP16■□□□□ 0.15
COL28A1-206ENST00000465339 DBNDD2Q9BQY9 259 aa16■□□□□ 0.15
COL28A1-206ENST00000465339 ABCF2Q9UG63 623 aa16■□□□□ 0.15
COL28A1-206ENST00000465339 PAPPA2Q9BXP8 1791 aa16■□□□□ 0.15
COL28A1-206ENST00000465339 MYH2Q9UKX2 1941 aa16■□□□□ 0.15
COL28A1-206ENST00000465339 AOX1Q06278 1338 aa15.99■□□□□ 0.15
COL28A1-206ENST00000465339 MAP2K2P36507 400 aa15.99■□□□□ 0.15
COL28A1-206ENST00000465339 RASA3Q14644 834 aa15.99■□□□□ 0.15
COL28A1-206ENST00000465339 TTC39AQ5SRH9 613 aa15.99■□□□□ 0.15
COL28A1-206ENST00000465339 FKBP1CQ5VVH2 108 aa15.99■□□□□ 0.15
COL28A1-206ENST00000465339 APOBEC3HQ6NTF7 200 aaKnown RBP15.99■□□□□ 0.15
COL28A1-206ENST00000465339 RGMBQ6NW40 437 aa15.99■□□□□ 0.15
COL28A1-206ENST00000465339 CCDC102AQ96A19 550 aa15.99■□□□□ 0.15
COL28A1-206ENST00000465339 KIF1BPQ96EK5 621 aa15.99■□□□□ 0.15
COL28A1-206ENST00000465339 TMOD2Q9NZR1 351 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms