RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 HGSNATQ68CP4 663 aa10.29□□□□□ -0.76
PTCD3-205ENST00000464541 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.29□□□□□ -0.76
PTCD3-205ENST00000464541 TXNRD3Q86VQ6 643 aa10.29□□□□□ -0.76
PTCD3-205ENST00000464541 NRSN2Q9GZP1 204 aa10.29□□□□□ -0.76
PTCD3-205ENST00000464541 RNF19AQ9NV58 838 aa10.29□□□□□ -0.76
PTCD3-205ENST00000464541 KCNK4Q9NYG8 393 aa10.29□□□□□ -0.76
PTCD3-205ENST00000464541 F8W735 103 aaPredicted RBP10.28□□□□□ -0.76
PTCD3-205ENST00000464541 NLRP12P59046 1061 aa10.28□□□□□ -0.76
PTCD3-205ENST00000464541 AKTIPQ9H8T0 292 aa10.28□□□□□ -0.76
PTCD3-205ENST00000464541 GPN3Q9UHW5 284 aaPredicted RBP10.28□□□□□ -0.76
PTCD3-205ENST00000464541 DDX3YO15523 660 aaKnown RBP10.27□□□□□ -0.77
PTCD3-205ENST00000464541 ACAD11Q709F0 780 aa10.27□□□□□ -0.77
PTCD3-205ENST00000464541 CRELD1Q96HD1 420 aa10.27□□□□□ -0.77
PTCD3-205ENST00000464541 PODXL2Q9NZ53 605 aa10.27□□□□□ -0.77
PTCD3-205ENST00000464541 MEGF11A6BM72 1044 aa10.26□□□□□ -0.77
PTCD3-205ENST00000464541 ITGB2P05107 769 aa10.26□□□□□ -0.77
PTCD3-205ENST00000464541 GATA4P43694 442 aa10.26□□□□□ -0.77
PTCD3-205ENST00000464541 Q6ZS46 218 aa10.26□□□□□ -0.77
PTCD3-205ENST00000464541 WFDC12Q8WWY7 111 aa10.26□□□□□ -0.77
PTCD3-205ENST00000464541 NECAB3Q96P71 396 aaPredicted RBP10.26□□□□□ -0.77
PTCD3-205ENST00000464541 TRIM56Q9BRZ2 755 aaKnown RBP10.26□□□□□ -0.77
PTCD3-205ENST00000464541 LOC100289279A0A1B0GTE1 492 aa10.25□□□□□ -0.77
PTCD3-205ENST00000464541 WISP1O95388 367 aa10.25□□□□□ -0.77
PTCD3-205ENST00000464541 ST13P50502 369 aaKnown RBP10.25□□□□□ -0.77
PTCD3-205ENST00000464541 HNRNPUQ00839 825 aaKnown RBP eCLIP10.25□□□□□ -0.77
PTCD3-205ENST00000464541 POU4F3Q15319 338 aa10.25□□□□□ -0.77
PTCD3-205ENST00000464541 KIAA1211Q6ZU35 1233 aa10.25□□□□□ -0.77
PTCD3-205ENST00000464541 SV2BQ7L1I2 683 aa10.25□□□□□ -0.77
PTCD3-205ENST00000464541 UBASH3BQ8TF42 649 aa10.25□□□□□ -0.77
PTCD3-205ENST00000464541 FAM161BQ96MY7 647 aa10.25□□□□□ -0.77
PTCD3-205ENST00000464541 CORO1BQ9BR76 489 aa10.25□□□□□ -0.77
PTCD3-205ENST00000464541 USP26Q9BXU7 913 aa10.25□□□□□ -0.77
PTCD3-205ENST00000464541 RNF208Q9H0X6 261 aa10.25□□□□□ -0.77
PTCD3-205ENST00000464541 VTI1BQ9UEU0 232 aa10.25□□□□□ -0.77
PTCD3-205ENST00000464541 SAMM50Q9Y512 469 aa10.25□□□□□ -0.77
PTCD3-205ENST00000464541 TTF2Q9UNY4 1162 aaKnown RBP10.24□□□□□ -0.77
PTCD3-205ENST00000464541 MSTNO14793 375 aa10.23□□□□□ -0.77
PTCD3-205ENST00000464541 NME2P22392 152 aa10.23□□□□□ -0.77
PTCD3-205ENST00000464541 MAOBP27338 520 aa10.23□□□□□ -0.77
PTCD3-205ENST00000464541 NOS3P29474 1203 aa10.23□□□□□ -0.77
PTCD3-205ENST00000464541 MRPL58Q14197 206 aaKnown RBP10.23□□□□□ -0.77
PTCD3-205ENST00000464541 TPTE2Q6XPS3 522 aa10.23□□□□□ -0.77
PTCD3-205ENST00000464541 RUSC1Q9BVN2 902 aa10.23□□□□□ -0.77
PTCD3-205ENST00000464541 EMILIN2Q9BXX0 1053 aa10.23□□□□□ -0.77
PTCD3-205ENST00000464541 CEP41Q9BYV8 373 aa10.23□□□□□ -0.77
PTCD3-205ENST00000464541 ENC1O14682 589 aa10.22□□□□□ -0.77
PTCD3-205ENST00000464541 IREB2P48200 963 aaKnown RBP10.22□□□□□ -0.77
PTCD3-205ENST00000464541 ZNF157P51786 506 aaPredicted RBP10.22□□□□□ -0.77
PTCD3-205ENST00000464541 TAF1CQ15572 869 aaPredicted RBP10.22□□□□□ -0.77
PTCD3-205ENST00000464541 ANKRD34AQ69YU3 496 aa10.22□□□□□ -0.77
PTCD3-205ENST00000464541 SUGCTQ9HAC7 445 aa10.22□□□□□ -0.77
PTCD3-205ENST00000464541 CTSHP09668 335 aa10.21□□□□□ -0.77
PTCD3-205ENST00000464541 ARNTP27540 789 aa10.21□□□□□ -0.77
PTCD3-205ENST00000464541 EXOSC6Q5RKV6 272 aaKnown RBP10.21□□□□□ -0.77
PTCD3-205ENST00000464541 SCARA3Q6AZY7 606 aa10.21□□□□□ -0.77
PTCD3-205ENST00000464541 SULF2Q8IWU5 870 aa10.21□□□□□ -0.77
PTCD3-205ENST00000464541 SPOCK3Q9BQ16 436 aa10.21□□□□□ -0.77
PTCD3-205ENST00000464541 NOC4LQ9BVI4 516 aaKnown RBP10.21□□□□□ -0.77
PTCD3-205ENST00000464541 TMPRSS13Q9BYE2 586 aa10.21□□□□□ -0.77
PTCD3-205ENST00000464541 KRT82Q9NSB4 513 aa10.21□□□□□ -0.77
PTCD3-205ENST00000464541 USP31Q70CQ4 1352 aa10.21□□□□□ -0.78
PTCD3-205ENST00000464541 PROCP04070 461 aa10.2□□□□□ -0.78
PTCD3-205ENST00000464541 GSTP1P09211 210 aaKnown RBP10.2□□□□□ -0.78
PTCD3-205ENST00000464541 RLBP1P12271 317 aa10.2□□□□□ -0.78
PTCD3-205ENST00000464541 VAMP1P23763 118 aa10.2□□□□□ -0.78
PTCD3-205ENST00000464541 GPAT2Q6NUI2 795 aa10.2□□□□□ -0.78
PTCD3-205ENST00000464541 DZIP1LQ8IYY4 767 aaKnown RBP10.2□□□□□ -0.78
PTCD3-205ENST00000464541 SYNGAP1Q96PV0 1343 aa10.2□□□□□ -0.78
PTCD3-205ENST00000464541 CYP4F12Q9HCS2 524 aa10.2□□□□□ -0.78
PTCD3-205ENST00000464541 UVSSAQ2YD98 709 aa10.19□□□□□ -0.78
PTCD3-205ENST00000464541 NUTM2GQ5VZR2 741 aa10.19□□□□□ -0.78
PTCD3-205ENST00000464541 AGGF1Q8N302 714 aaeCLIP10.19□□□□□ -0.78
PTCD3-205ENST00000464541 SMG8Q8ND04 991 aaKnown RBP10.19□□□□□ -0.78
PTCD3-205ENST00000464541 SSBP4Q9BWG4 385 aaPredicted RBP10.19□□□□□ -0.78
PTCD3-205ENST00000464541 FBXO24O75426 580 aa10.18□□□□□ -0.78
PTCD3-205ENST00000464541 ALX3O95076 343 aa10.18□□□□□ -0.78
PTCD3-205ENST00000464541 GLB1P16278 677 aa10.18□□□□□ -0.78
PTCD3-205ENST00000464541 LRRC14Q15048 493 aa10.18□□□□□ -0.78
PTCD3-205ENST00000464541 CCDC85BQ15834 202 aaPredicted RBP10.18□□□□□ -0.78
PTCD3-205ENST00000464541 FDX2Q6P4F2 183 aa10.18□□□□□ -0.78
PTCD3-205ENST00000464541 PDZD3Q86UT5 571 aa10.18□□□□□ -0.78
PTCD3-205ENST00000464541 DLGAP3O95886 979 aa10.17□□□□□ -0.78
PTCD3-205ENST00000464541 MEI1Q5TIA1 1274 aa10.17□□□□□ -0.78
PTCD3-205ENST00000464541 CYP8B1Q9UNU6 501 aa10.17□□□□□ -0.78
PTCD3-205ENST00000464541 CELA3AP09093 270 aa10.16□□□□□ -0.78
PTCD3-205ENST00000464541 RPS26P62854 115 aaKnown RBP10.16□□□□□ -0.78
PTCD3-205ENST00000464541 ZNF252P-AS1Q0IIN9 211 aa10.16□□□□□ -0.78
PTCD3-205ENST00000464541 MEGF10Q96KG7 1140 aa10.16□□□□□ -0.78
PTCD3-205ENST00000464541 CTSBP07858 339 aa10.15□□□□□ -0.78
PTCD3-205ENST00000464541 BMP6P22004 513 aa10.15□□□□□ -0.78
PTCD3-205ENST00000464541 PDE3AQ14432 1141 aa10.15□□□□□ -0.78
PTCD3-205ENST00000464541 FAM46AQ96IP4 442 aaKnown RBP10.15□□□□□ -0.78
PTCD3-205ENST00000464541 PAGE1O75459 146 aa10.14□□□□□ -0.79
PTCD3-205ENST00000464541 TIAF1O95411 115 aa10.14□□□□□ -0.79
PTCD3-205ENST00000464541 ECEL1O95672 775 aa10.14□□□□□ -0.79
PTCD3-205ENST00000464541 PCNX4Q63HM2 1172 aa10.14□□□□□ -0.79
PTCD3-205ENST00000464541 STK35Q8TDR2 534 aa10.14□□□□□ -0.79
PTCD3-205ENST00000464541 CCDC86Q9H6F5 360 aaKnown RBP10.14□□□□□ -0.79
PTCD3-205ENST00000464541 RAD18Q9NS91 495 aa10.14□□□□□ -0.79
PTCD3-205ENST00000464541 CACNA2D2Q9NY47 1150 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms