RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 MYOZ2Q9NPC6 264 aa9.41□□□□□ -0.9
USP4-207ENST00000462673 NMRK2Q9NPI5 230 aa9.41□□□□□ -0.9
USP4-207ENST00000462673 ECHDC1Q9NTX5 307 aa9.41□□□□□ -0.9
USP4-207ENST00000462673 TTF2Q9UNY4 1162 aaKnown RBP9.41□□□□□ -0.9
USP4-207ENST00000462673 LTBP1Q14766 1721 aa9.4□□□□□ -0.9
USP4-207ENST00000462673 TTC41PQ6P2S7 1318 aa9.4□□□□□ -0.9
USP4-207ENST00000462673 MAP4K4O95819 1239 aaPredicted RBP9.4□□□□□ -0.9
USP4-207ENST00000462673 ATP5JP18859 108 aa9.4□□□□□ -0.9
USP4-207ENST00000462673 ADORA1P30542 326 aa9.4□□□□□ -0.9
USP4-207ENST00000462673 TNNI2P48788 182 aa9.4□□□□□ -0.9
USP4-207ENST00000462673 RGS3P49796 1198 aa9.4□□□□□ -0.9
USP4-207ENST00000462673 MAP3K12Q12852 859 aa9.4□□□□□ -0.9
USP4-207ENST00000462673 TNFAIP1Q13829 316 aa9.4□□□□□ -0.9
USP4-207ENST00000462673 CHADLQ6NUI6 762 aa9.4□□□□□ -0.9
USP4-207ENST00000462673 HHIPL2Q6UWX4 724 aa9.4□□□□□ -0.9
USP4-207ENST00000462673 CDC37L1Q7L3B6 337 aa9.4□□□□□ -0.9
USP4-207ENST00000462673 TICAM2Q86XR7 235 aa9.4□□□□□ -0.9
USP4-207ENST00000462673 DZIP1Q86YF9 867 aaKnown RBP9.4□□□□□ -0.9
USP4-207ENST00000462673 SMC5Q8IY18 1101 aa9.4□□□□□ -0.9
USP4-207ENST00000462673 MTMR14Q8NCE2 650 aa9.4□□□□□ -0.9
USP4-207ENST00000462673 GMLQ99445 158 aa9.4□□□□□ -0.9
USP4-207ENST00000462673 TMOD2Q9NZR1 351 aa9.4□□□□□ -0.9
USP4-207ENST00000462673 RAI14Q9P0K7 980 aa9.4□□□□□ -0.9
USP4-207ENST00000462673 DBNLQ9UJU6 430 aaKnown RBP9.4□□□□□ -0.9
USP4-207ENST00000462673 IQSEC3Q9UPP2 1182 aaPredicted RBP9.4□□□□□ -0.9
USP4-207ENST00000462673 DUOX1Q9NRD9 1551 aa9.4□□□□□ -0.9
USP4-207ENST00000462673 ZNF609O15014 1411 aa9.39□□□□□ -0.91
USP4-207ENST00000462673 F8W031 263 aaPredicted RBP9.39□□□□□ -0.91
USP4-207ENST00000462673 EIF5BO60841 1220 aaKnown RBP9.39□□□□□ -0.91
USP4-207ENST00000462673 GLRX3O76003 335 aaKnown RBP9.39□□□□□ -0.91
USP4-207ENST00000462673 BAG3O95817 575 aa9.39□□□□□ -0.91
USP4-207ENST00000462673 KIF4BQ2VIQ3 1234 aa9.39□□□□□ -0.91
USP4-207ENST00000462673 SLC51AQ86UW1 340 aa9.39□□□□□ -0.91
USP4-207ENST00000462673 CHD1LQ86WJ1 897 aa9.39□□□□□ -0.91
USP4-207ENST00000462673 SKAP1Q86WV1 359 aa9.39□□□□□ -0.91
USP4-207ENST00000462673 SULF1Q8IWU6 871 aa9.39□□□□□ -0.91
USP4-207ENST00000462673 HOOK2Q96ED9 719 aa9.39□□□□□ -0.91
USP4-207ENST00000462673 UPF2Q9HAU5 1272 aaKnown RBP9.39□□□□□ -0.91
USP4-207ENST00000462673 RNF216Q9NWF9 866 aaPredicted RBP9.39□□□□□ -0.91
USP4-207ENST00000462673 HMG20BQ9P0W2 317 aa9.39□□□□□ -0.91
USP4-207ENST00000462673 SCN4AP35499 1836 aa9.39□□□□□ -0.91
USP4-207ENST00000462673 POTECB2RU33 542 aa9.38□□□□□ -0.91
USP4-207ENST00000462673 KIF3CO14782 793 aa9.38□□□□□ -0.91
USP4-207ENST00000462673 IGHDP01880 384 aa9.38□□□□□ -0.91
USP4-207ENST00000462673 PLCG2P16885 1265 aa9.38□□□□□ -0.91
USP4-207ENST00000462673 MX1P20591 662 aa9.38□□□□□ -0.91
USP4-207ENST00000462673 NF2P35240 595 aa9.38□□□□□ -0.91
USP4-207ENST00000462673 SLC4A3P48751 1232 aa9.38□□□□□ -0.91
USP4-207ENST00000462673 NUCB1Q02818 461 aa9.38□□□□□ -0.91
USP4-207ENST00000462673 RASGRF1Q13972 1273 aa9.38□□□□□ -0.91
USP4-207ENST00000462673 SCARF1Q14162 830 aa9.38□□□□□ -0.91
USP4-207ENST00000462673 CFAP100Q494V2 611 aa9.38□□□□□ -0.91
USP4-207ENST00000462673 GLIPR1L2Q4G1C9 344 aa9.38□□□□□ -0.91
USP4-207ENST00000462673 TBC1D10BQ4KMP7 808 aaPredicted RBP9.38□□□□□ -0.91
USP4-207ENST00000462673 SAMD7Q7Z3H4 446 aa9.38□□□□□ -0.91
USP4-207ENST00000462673 APOBEC3FQ8IUX4 373 aaKnown RBP9.38□□□□□ -0.91
USP4-207ENST00000462673 FAM163AQ96GL9 167 aaPredicted RBP9.38□□□□□ -0.91
USP4-207ENST00000462673 PGAP2Q9UHJ9 254 aa9.38□□□□□ -0.91
USP4-207ENST00000462673 WDR90Q96KV7 1748 aa9.38□□□□□ -0.91
USP4-207ENST00000462673 COL4A1P02462 1669 aa9.38□□□□□ -0.91
USP4-207ENST00000462673 PITPNM2Q9BZ72 1349 aa9.37□□□□□ -0.91
USP4-207ENST00000462673 TIAM2Q8IVF5 1701 aa9.37□□□□□ -0.91
USP4-207ENST00000462673 SMARCA5O60264 1052 aaPredicted RBP9.37□□□□□ -0.91
USP4-207ENST00000462673 MCAMP43121 646 aa9.37□□□□□ -0.91
USP4-207ENST00000462673 CRKP46108 304 aa9.37□□□□□ -0.91
USP4-207ENST00000462673 NAA16Q6N069 864 aaPredicted RBP9.37□□□□□ -0.91
USP4-207ENST00000462673 CNTROBQ8N137 903 aa9.37□□□□□ -0.91
USP4-207ENST00000462673 ZDHHC15Q96MV8 337 aa9.37□□□□□ -0.91
USP4-207ENST00000462673 HAUS7Q99871 368 aa9.37□□□□□ -0.91
USP4-207ENST00000462673 BOLA2Q9H3K6 86 aa9.37□□□□□ -0.91
USP4-207ENST00000462673 JAG2Q9Y219 1238 aa9.37□□□□□ -0.91
USP4-207ENST00000462673 PPP2R3BQ9Y5P8 575 aa9.37□□□□□ -0.91
USP4-207ENST00000462673 WNT10BO00744 389 aa9.36□□□□□ -0.91
USP4-207ENST00000462673 IDH1O75874 414 aaKnown RBP9.36□□□□□ -0.91
USP4-207ENST00000462673 ZFYP08048 801 aaPredicted RBP9.36□□□□□ -0.91
USP4-207ENST00000462673 ZAP70P43403 619 aa9.36□□□□□ -0.91
USP4-207ENST00000462673 SUPT20HL1Q3ZLR7 823 aa9.36□□□□□ -0.91
USP4-207ENST00000462673 FKBP1CQ5VVH2 108 aa9.36□□□□□ -0.91
USP4-207ENST00000462673 CERS5Q8N5B7 392 aa9.36□□□□□ -0.91
USP4-207ENST00000462673 DNAJC2Q99543 621 aaKnown RBP9.36□□□□□ -0.91
USP4-207ENST00000462673 MXD3Q9BW11 206 aa9.36□□□□□ -0.91
USP4-207ENST00000462673 SNRKQ9NRH2 765 aa9.36□□□□□ -0.91
USP4-207ENST00000462673 PAG1Q9NWQ8 432 aa9.36□□□□□ -0.91
USP4-207ENST00000462673 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.36□□□□□ -0.91
USP4-207ENST00000462673 AK9Q5TCS8 1911 aa9.35□□□□□ -0.91
USP4-207ENST00000462673 SPDYE2BA6NHP3 402 aa9.35□□□□□ -0.91
USP4-207ENST00000462673 CYP2E1P05181 493 aaPredicted RBP9.35□□□□□ -0.91
USP4-207ENST00000462673 SPDYE6P0CI01 402 aa9.35□□□□□ -0.91
USP4-207ENST00000462673 MECOMQ03112 1051 aa9.35□□□□□ -0.91
USP4-207ENST00000462673 SLC9C2Q5TAH2 1124 aa9.35□□□□□ -0.91
USP4-207ENST00000462673 KRT26Q7Z3Y9 468 aa9.35□□□□□ -0.91
USP4-207ENST00000462673 EVI5LQ96CN4 794 aa9.35□□□□□ -0.91
USP4-207ENST00000462673 PRMT6Q96LA8 375 aaPredicted RBP9.35□□□□□ -0.91
USP4-207ENST00000462673 LNPKQ9C0E8 428 aa9.35□□□□□ -0.91
USP4-207ENST00000462673 STAP2Q9UGK3 403 aa9.35□□□□□ -0.91
USP4-207ENST00000462673 COL4A5P29400 1685 aa9.35□□□□□ -0.91
USP4-207ENST00000462673 AOX1Q06278 1338 aa9.34□□□□□ -0.91
USP4-207ENST00000462673 GPR75-ASB3A0A0A6YYF3 556 aa9.34□□□□□ -0.91
USP4-207ENST00000462673 HIP1O00291 1037 aa9.34□□□□□ -0.91
USP4-207ENST00000462673 GOLIM4O00461 696 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms