RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 CHAF1AQ13111 956 aaPredicted RBP20.25■□□□□ 0.83
COL7A1-204ENST00000462475 TNFAIP1Q13829 316 aa20.25■□□□□ 0.83
COL7A1-204ENST00000462475 VPS37DQ86XT2 251 aa20.25■□□□□ 0.83
COL7A1-204ENST00000462475 INHBEP58166 350 aa20.24■□□□□ 0.83
COL7A1-204ENST00000462475 FBXO46Q6PJ61 603 aaPredicted RBP20.24■□□□□ 0.83
COL7A1-204ENST00000462475 ANKRD13AQ8IZ07 590 aa20.24■□□□□ 0.83
COL7A1-204ENST00000462475 TEPSINQ96N21 525 aa20.24■□□□□ 0.83
COL7A1-204ENST00000462475 USP44Q9H0E7 712 aa20.24■□□□□ 0.83
COL7A1-204ENST00000462475 TCP10L2B9ZVM9 353 aa20.23■□□□□ 0.83
COL7A1-204ENST00000462475 PDE8BO95263 885 aa20.23■□□□□ 0.83
COL7A1-204ENST00000462475 OTOFQ9HC10 1997 aa20.23■□□□□ 0.83
COL7A1-204ENST00000462475 LAMB1P07942 1786 aa20.22■□□□□ 0.83
COL7A1-204ENST00000462475 BCAMP50895 628 aa20.22■□□□□ 0.83
COL7A1-204ENST00000462475 SLFN5Q08AF3 891 aa20.22■□□□□ 0.83
COL7A1-204ENST00000462475 CAVIN4Q5BKX8 364 aa20.22■□□□□ 0.83
COL7A1-204ENST00000462475 TMEM39BQ9GZU3 492 aa20.22■□□□□ 0.83
COL7A1-204ENST00000462475 ELP3Q9H9T3 547 aa20.22■□□□□ 0.83
COL7A1-204ENST00000462475 FRAT2O75474 233 aaPredicted RBP20.21■□□□□ 0.83
COL7A1-204ENST00000462475 SLC34A2O95436 690 aa20.21■□□□□ 0.83
COL7A1-204ENST00000462475 TBC1D22AQ8WUA7 517 aa20.21■□□□□ 0.83
COL7A1-204ENST00000462475 RFX5P48382 616 aaPredicted RBP20.2■□□□□ 0.82
COL7A1-204ENST00000462475 CACNB3P54284 484 aa20.2■□□□□ 0.82
COL7A1-204ENST00000462475 OPTNQ96CV9 577 aa20.2■□□□□ 0.82
COL7A1-204ENST00000462475 CDCA7LQ96GN5 454 aa20.2■□□□□ 0.82
COL7A1-204ENST00000462475 PTPN18Q99952 460 aa20.2■□□□□ 0.82
COL7A1-204ENST00000462475 PDE4DIPQ5VU43 2346 aa20.19■□□□□ 0.82
COL7A1-204ENST00000462475 FGFR2P21802 821 aa20.19■□□□□ 0.82
COL7A1-204ENST00000462475 HDLBPQ00341 1268 aaKnown RBP20.19■□□□□ 0.82
COL7A1-204ENST00000462475 CRHR2Q13324 411 aa20.19■□□□□ 0.82
COL7A1-204ENST00000462475 PUM3Q15397 648 aaKnown RBP20.19■□□□□ 0.82
COL7A1-204ENST00000462475 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.19■□□□□ 0.82
COL7A1-204ENST00000462475 CNKSR2Q8WXI2 1034 aa20.19■□□□□ 0.82
COL7A1-204ENST00000462475 TRIM17Q9Y577 477 aa20.19■□□□□ 0.82
COL7A1-204ENST00000462475 TESPA1A2RU30 521 aaPredicted RBP20.18■□□□□ 0.82
COL7A1-204ENST00000462475 IFIT1P09914 478 aaKnown RBP20.18■□□□□ 0.82
COL7A1-204ENST00000462475 TNNI2P48788 182 aa20.18■□□□□ 0.82
COL7A1-204ENST00000462475 VGLL4Q14135 290 aa20.18■□□□□ 0.82
COL7A1-204ENST00000462475 ALDH1L2Q3SY69 923 aa20.18■□□□□ 0.82
COL7A1-204ENST00000462475 TEKT1Q969V4 418 aa20.18■□□□□ 0.82
COL7A1-204ENST00000462475 SMC4Q9NTJ3 1288 aa20.18■□□□□ 0.82
COL7A1-204ENST00000462475 KIF16BQ96L93 1317 aa20.18■□□□□ 0.82
COL7A1-204ENST00000462475 EYA2O00167 538 aa20.17■□□□□ 0.82
COL7A1-204ENST00000462475 OTOP1Q7RTM1 612 aa20.17■□□□□ 0.82
COL7A1-204ENST00000462475 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.17■□□□□ 0.82
COL7A1-204ENST00000462475 MS4A4AQ96JQ5 239 aa20.17■□□□□ 0.82
COL7A1-204ENST00000462475 ZDHHC15Q96MV8 337 aa20.17■□□□□ 0.82
COL7A1-204ENST00000462475 MAP3K9P80192 1104 aa20.16■□□□□ 0.82
COL7A1-204ENST00000462475 OTUD7BQ6GQQ9 843 aa20.16■□□□□ 0.82
COL7A1-204ENST00000462475 APOBEC3HQ6NTF7 200 aaKnown RBP20.16■□□□□ 0.82
COL7A1-204ENST00000462475 CD99L2Q8TCZ2 262 aa20.16■□□□□ 0.82
COL7A1-204ENST00000462475 ATG9AQ7Z3C6 839 aa20.15■□□□□ 0.82
COL7A1-204ENST00000462475 BRI3BPQ8WY22 251 aa20.15■□□□□ 0.82
COL7A1-204ENST00000462475 CENPFP49454 3210 aa20.15■□□□□ 0.82
COL7A1-204ENST00000462475 MAST3O60307 1309 aa20.14■□□□□ 0.81
COL7A1-204ENST00000462475 SLC5A1P13866 664 aa20.14■□□□□ 0.81
COL7A1-204ENST00000462475 LPIN2Q92539 896 aa20.14■□□□□ 0.81
COL7A1-204ENST00000462475 OTUD5Q96G74 571 aa20.14■□□□□ 0.81
COL7A1-204ENST00000462475 ERO1AQ96HE7 468 aa20.14■□□□□ 0.81
COL7A1-204ENST00000462475 TMOD2Q9NZR1 351 aa20.14■□□□□ 0.81
COL7A1-204ENST00000462475 SUGT1Q9Y2Z0 365 aa20.14■□□□□ 0.81
COL7A1-204ENST00000462475 CSADQ9Y600 493 aa20.14■□□□□ 0.81
COL7A1-204ENST00000462475 CCL15-CCL14A0A0B4J2E2 113 aa20.13■□□□□ 0.81
COL7A1-204ENST00000462475 CAP1Q01518 475 aa20.13■□□□□ 0.81
COL7A1-204ENST00000462475 CCL15Q16663 113 aa20.13■□□□□ 0.81
COL7A1-204ENST00000462475 TRMT2AQ8IZ69 625 aaKnown RBP20.13■□□□□ 0.81
COL7A1-204ENST00000462475 MRIQ9BWK5 157 aa20.13■□□□□ 0.81
COL7A1-204ENST00000462475 SIL1Q9H173 461 aa20.13■□□□□ 0.81
COL7A1-204ENST00000462475 SNCAIPQ9Y6H5 919 aa20.13■□□□□ 0.81
COL7A1-204ENST00000462475 UBTFL1P0CB47 393 aaPredicted RBP20.12■□□□□ 0.81
COL7A1-204ENST00000462475 FAM83AQ86UY5 434 aa20.12■□□□□ 0.81
COL7A1-204ENST00000462475 SPDYE5A6NIY4 337 aa20.11■□□□□ 0.81
COL7A1-204ENST00000462475 GTF2A2P52657 109 aa20.11■□□□□ 0.81
COL7A1-204ENST00000462475 SP3Q02447 781 aa20.11■□□□□ 0.81
COL7A1-204ENST00000462475 FKBP1CQ5VVH2 108 aa20.11■□□□□ 0.81
COL7A1-204ENST00000462475 HHIPL2Q6UWX4 724 aa20.11■□□□□ 0.81
COL7A1-204ENST00000462475 FAM43AQ8N2R8 423 aa20.11■□□□□ 0.81
COL7A1-204ENST00000462475 WDR66Q8TBY9 1149 aa20.11■□□□□ 0.81
COL7A1-204ENST00000462475 WRNIP1Q96S55 665 aa20.11■□□□□ 0.81
COL7A1-204ENST00000462475 NOB1Q9ULX3 412 aaKnown RBP20.11■□□□□ 0.81
COL7A1-204ENST00000462475 PTPN22Q9Y2R2 807 aa20.11■□□□□ 0.81
COL7A1-204ENST00000462475 BRCA2P51587 3418 aa20.11■□□□□ 0.81
COL7A1-204ENST00000462475 MKI67P46013 3256 aaKnown RBP20.1■□□□□ 0.81
COL7A1-204ENST00000462475 RPAP1Q9BWH6 1393 aaPredicted RBP20.1■□□□□ 0.81
COL7A1-204ENST00000462475 TAF1CQ15572 869 aaPredicted RBP20.1■□□□□ 0.81
COL7A1-204ENST00000462475 ATP2B3Q16720 1220 aa20.1■□□□□ 0.81
COL7A1-204ENST00000462475 PRPF38BQ5VTL8 546 aaKnown RBP20.1■□□□□ 0.81
COL7A1-204ENST00000462475 ZKSCAN4Q969J2 545 aaPredicted RBP20.1■□□□□ 0.81
COL7A1-204ENST00000462475 EFCC1Q9HA90 598 aa20.1■□□□□ 0.81
COL7A1-204ENST00000462475 CIAO1O76071 339 aa20.09■□□□□ 0.81
COL7A1-204ENST00000462475 PRDX5P30044 214 aa20.09■□□□□ 0.81
COL7A1-204ENST00000462475 DIXDC1Q155Q3 683 aa20.09■□□□□ 0.81
COL7A1-204ENST00000462475 DAGLAQ9Y4D2 1042 aa20.09■□□□□ 0.81
COL7A1-204ENST00000462475 LRRFIP2Q9Y608 721 aaKnown RBP20.09■□□□□ 0.81
COL7A1-204ENST00000462475 POTEFA5A3E0 1075 aa20.08■□□□□ 0.81
COL7A1-204ENST00000462475 CT47B1P0C2W7 299 aaPredicted RBP20.08■□□□□ 0.81
COL7A1-204ENST00000462475 ZFYVE28Q9HCC9 887 aa20.08■□□□□ 0.81
COL7A1-204ENST00000462475 FBXO3Q9UK99 471 aa20.08■□□□□ 0.81
COL7A1-204ENST00000462475 PA2G4Q9UQ80 394 aaKnown RBP20.08■□□□□ 0.81
COL7A1-204ENST00000462475 MIGA2Q7L4E1 593 aa20.07■□□□□ 0.8
COL7A1-204ENST00000462475 ERO1BQ86YB8 467 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms