RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 ANGEL2Q5VTE6 544 aaKnown RBP14.56□□□□□ -0.08
VPS52-213ENST00000461743 TEKT1Q969V4 418 aa14.56□□□□□ -0.08
VPS52-213ENST00000461743 CRBNQ96SW2 442 aa14.56□□□□□ -0.08
VPS52-213ENST00000461743 PPP2R3BQ9Y5P8 575 aa14.56□□□□□ -0.08
VPS52-213ENST00000461743 OTOFQ9HC10 1997 aa14.56□□□□□ -0.08
VPS52-213ENST00000461743 F8W031 263 aaPredicted RBP14.55□□□□□ -0.08
VPS52-213ENST00000461743 NBPF9Q3BBW0 867 aa14.55□□□□□ -0.08
VPS52-213ENST00000461743 TTC39AQ5SRH9 613 aa14.55□□□□□ -0.08
VPS52-213ENST00000461743 SPTY2D1Q68D10 685 aaPredicted RBP14.55□□□□□ -0.08
VPS52-213ENST00000461743 CLASRPQ8N2M8 674 aaKnown RBP14.55□□□□□ -0.08
VPS52-213ENST00000461743 GLIS2Q9BZE0 524 aaPredicted RBP14.55□□□□□ -0.08
VPS52-213ENST00000461743 DBNLQ9UJU6 430 aaKnown RBP14.55□□□□□ -0.08
VPS52-213ENST00000461743 LDHBP07195 334 aaKnown RBP14.54□□□□□ -0.08
VPS52-213ENST00000461743 CRKP46108 304 aa14.54□□□□□ -0.08
VPS52-213ENST00000461743 TNFAIP1Q13829 316 aa14.54□□□□□ -0.08
VPS52-213ENST00000461743 HHIPL2Q6UWX4 724 aa14.54□□□□□ -0.08
VPS52-213ENST00000461743 SPATA5Q8NB90 893 aa14.54□□□□□ -0.08
VPS52-213ENST00000461743 EAF2Q96CJ1 260 aaPredicted RBP14.54□□□□□ -0.08
VPS52-213ENST00000461743 ZDHHC15Q96MV8 337 aa14.54□□□□□ -0.08
VPS52-213ENST00000461743 DBNDD2Q9BQY9 259 aa14.54□□□□□ -0.08
VPS52-213ENST00000461743 RPAP1Q9BWH6 1393 aaPredicted RBP14.53□□□□□ -0.08
VPS52-213ENST00000461743 ASTN2O75129 1339 aaPredicted RBP14.53□□□□□ -0.08
VPS52-213ENST00000461743 TRAF5O00463 557 aa14.53□□□□□ -0.08
VPS52-213ENST00000461743 MCAMP43121 646 aa14.53□□□□□ -0.08
VPS52-213ENST00000461743 RBM5P52756 815 aaKnown RBP eCLIP14.53□□□□□ -0.08
VPS52-213ENST00000461743 SPDYE2Q495Y8 402 aa14.53□□□□□ -0.08
VPS52-213ENST00000461743 USP48Q86UV5 1035 aa14.53□□□□□ -0.08
VPS52-213ENST00000461743 AACSQ86V21 672 aa14.53□□□□□ -0.08
VPS52-213ENST00000461743 SLF2Q8IX21 1173 aa14.53□□□□□ -0.08
VPS52-213ENST00000461743 LRRCC1Q9C099 1032 aa14.53□□□□□ -0.08
VPS52-213ENST00000461743 DCTPP1Q9H773 170 aa14.53□□□□□ -0.08
VPS52-213ENST00000461743 HMG20BQ9P0W2 317 aa14.53□□□□□ -0.08
VPS52-213ENST00000461743 CNTNAP1P78357 1384 aa14.52□□□□□ -0.08
VPS52-213ENST00000461743 ADM5C9JUS6 153 aa14.52□□□□□ -0.09
VPS52-213ENST00000461743 CELF2O95319 508 aaKnown RBP14.52□□□□□ -0.09
VPS52-213ENST00000461743 PRDX5P30044 214 aa14.52□□□□□ -0.09
VPS52-213ENST00000461743 FKBP1BP68106 108 aa14.52□□□□□ -0.09
VPS52-213ENST00000461743 GRIK5Q16478 980 aa14.52□□□□□ -0.09
VPS52-213ENST00000461743 TMED8Q6PL24 325 aaPredicted RBP14.52□□□□□ -0.09
VPS52-213ENST00000461743 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.52□□□□□ -0.09
VPS52-213ENST00000461743 CDCA5Q96FF9 252 aa14.52□□□□□ -0.09
VPS52-213ENST00000461743 HHIPL1Q96JK4 782 aa14.52□□□□□ -0.09
VPS52-213ENST00000461743 GAKO14976 1311 aa14.51□□□□□ -0.09
VPS52-213ENST00000461743 PCNTO95613 3336 aa14.51□□□□□ -0.09
VPS52-213ENST00000461743 RASSF10A6NK89 507 aa14.51□□□□□ -0.09
VPS52-213ENST00000461743 HDAC1Q13547 482 aaPredicted RBP14.51□□□□□ -0.09
VPS52-213ENST00000461743 FKBP1CQ5VVH2 108 aa14.51□□□□□ -0.09
VPS52-213ENST00000461743 ERICH6Q7L0X2 663 aa14.51□□□□□ -0.09
VPS52-213ENST00000461743 DZIP1Q86YF9 867 aaKnown RBP14.51□□□□□ -0.09
VPS52-213ENST00000461743 PRMT6Q96LA8 375 aaPredicted RBP14.51□□□□□ -0.09
VPS52-213ENST00000461743 TLR7Q9NYK1 1049 aaKnown RBP14.51□□□□□ -0.09
VPS52-213ENST00000461743 TMOD2Q9NZR1 351 aa14.51□□□□□ -0.09
VPS52-213ENST00000461743 SUPT16HQ9Y5B9 1047 aaKnown RBP14.51□□□□□ -0.09
VPS52-213ENST00000461743 PCDHB15Q9Y5E8 787 aa14.51□□□□□ -0.09
VPS52-213ENST00000461743 TLL2Q9Y6L7 1015 aa14.51□□□□□ -0.09
VPS52-213ENST00000461743 IFIT2P09913 472 aaKnown RBP14.5□□□□□ -0.09
VPS52-213ENST00000461743 NF2P35240 595 aa14.5□□□□□ -0.09
VPS52-213ENST00000461743 TNNI2P48788 182 aa14.5□□□□□ -0.09
VPS52-213ENST00000461743 GSTO1P78417 241 aa14.5□□□□□ -0.09
VPS52-213ENST00000461743 CST9Q5W186 159 aa14.5□□□□□ -0.09
VPS52-213ENST00000461743 KLRG1Q96E93 195 aa14.5□□□□□ -0.09
VPS52-213ENST00000461743 CCDC8Q9H0W5 538 aaPredicted RBP14.5□□□□□ -0.09
VPS52-213ENST00000461743 IL1RAPL2Q9NP60 686 aa14.5□□□□□ -0.09
VPS52-213ENST00000461743 ABCF2Q9UG63 623 aa14.5□□□□□ -0.09
VPS52-213ENST00000461743 MYH1P12882 1939 aa14.5□□□□□ -0.09
VPS52-213ENST00000461743 NAV1Q8NEY1 1877 aa14.5□□□□□ -0.09
VPS52-213ENST00000461743 RFX7Q2KHR2 1363 aa14.49□□□□□ -0.09
VPS52-213ENST00000461743 MROH7-TTC4A0A0A0MT08 1334 aa14.49□□□□□ -0.09
VPS52-213ENST00000461743 APOBEC3HQ6NTF7 200 aaKnown RBP14.49□□□□□ -0.09
VPS52-213ENST00000461743 PI16Q6UXB8 463 aa14.49□□□□□ -0.09
VPS52-213ENST00000461743 GCC1Q96CN9 775 aa14.49□□□□□ -0.09
VPS52-213ENST00000461743 FAM163AQ96GL9 167 aaPredicted RBP14.49□□□□□ -0.09
VPS52-213ENST00000461743 ZNF70Q9UC06 446 aaPredicted RBP14.49□□□□□ -0.09
VPS52-213ENST00000461743 ABT1Q9ULW3 272 aaKnown RBP14.49□□□□□ -0.09
VPS52-213ENST00000461743 DAGLAQ9Y4D2 1042 aa14.49□□□□□ -0.09
VPS52-213ENST00000461743 PCDHAC2Q9Y5I4 1007 aa14.49□□□□□ -0.09
VPS52-213ENST00000461743 SSC5DA1L4H1 1573 aa14.48□□□□□ -0.09
VPS52-213ENST00000461743 APBB1O00213 710 aa14.48□□□□□ -0.09
VPS52-213ENST00000461743 MAP4K4O95819 1239 aaPredicted RBP14.48□□□□□ -0.09
VPS52-213ENST00000461743 SAPCD2Q86UD0 394 aa14.48□□□□□ -0.09
VPS52-213ENST00000461743 FAM83AQ86UY5 434 aa14.48□□□□□ -0.09
VPS52-213ENST00000461743 DNAJC5GQ8N7S2 189 aa14.48□□□□□ -0.09
VPS52-213ENST00000461743 C2orf69Q8N8R5 385 aa14.48□□□□□ -0.09
VPS52-213ENST00000461743 DEFB129Q9H1M3 183 aa14.48□□□□□ -0.09
VPS52-213ENST00000461743 ZNF408Q9H9D4 720 aa14.48□□□□□ -0.09
VPS52-213ENST00000461743 VEZTQ9HBM0 779 aa14.48□□□□□ -0.09
VPS52-213ENST00000461743 GBA2Q9HCG7 927 aaPredicted RBP14.48□□□□□ -0.09
VPS52-213ENST00000461743 DDX60LQ5H9U9 1706 aaKnown RBP14.48□□□□□ -0.09
VPS52-213ENST00000461743 COL2A1P02458 1487 aaPredicted RBP14.48□□□□□ -0.09
VPS52-213ENST00000461743 CLRN2A0PK11 232 aa14.47□□□□□ -0.09
VPS52-213ENST00000461743 LDHCP07864 332 aa14.47□□□□□ -0.09
VPS52-213ENST00000461743 FMR1Q06787 632 aaKnown RBP eCLIP14.47□□□□□ -0.09
VPS52-213ENST00000461743 TTF1Q15361 905 aaPredicted RBP14.47□□□□□ -0.09
VPS52-213ENST00000461743 DIXDC1Q155Q3 683 aa14.47□□□□□ -0.09
VPS52-213ENST00000461743 NSUN4Q96CB9 384 aaKnown RBP14.47□□□□□ -0.09
VPS52-213ENST00000461743 GPATCH3Q96I76 525 aa14.47□□□□□ -0.09
VPS52-213ENST00000461743 TDRD3Q9H7E2 651 aaKnown RBP14.47□□□□□ -0.09
VPS52-213ENST00000461743 ATAD5Q96QE3 1844 aa14.47□□□□□ -0.09
VPS52-213ENST00000461743 MYH8P13535 1937 aa14.47□□□□□ -0.09
VPS52-213ENST00000461743 AOX1Q06278 1338 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms