RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 ZMIZ1Q9ULJ6 1067 aa10.53□□□□□ -0.72
USP54-208ENST00000461520 SBNO1A3KN83 1393 aa10.52□□□□□ -0.72
USP54-208ENST00000461520 ADGRB2O60241 1585 aa10.52□□□□□ -0.72
USP54-208ENST00000461520 TNS3Q68CZ2 1445 aa10.52□□□□□ -0.73
USP54-208ENST00000461520 ADH7P40394 386 aa10.52□□□□□ -0.73
USP54-208ENST00000461520 SUZ12Q15022 739 aaKnown RBP10.52□□□□□ -0.73
USP54-208ENST00000461520 STK32AQ8WU08 396 aa10.52□□□□□ -0.73
USP54-208ENST00000461520 PLVAPQ9BX97 442 aa10.52□□□□□ -0.73
USP54-208ENST00000461520 IGFLR1Q9H665 355 aa10.52□□□□□ -0.73
USP54-208ENST00000461520 STARD13Q9Y3M8 1113 aa10.52□□□□□ -0.73
USP54-208ENST00000461520 GLI3P10071 1580 aa10.52□□□□□ -0.73
USP54-208ENST00000461520 EIF3AQ14152 1382 aaKnown RBP10.52□□□□□ -0.73
USP54-208ENST00000461520 BRWD3Q6RI45 1802 aa10.51□□□□□ -0.73
USP54-208ENST00000461520 PROCP04070 461 aa10.51□□□□□ -0.73
USP54-208ENST00000461520 TBC1D8BQ0IIM8 1120 aa10.51□□□□□ -0.73
USP54-208ENST00000461520 ALYREFQ86V81 257 aaKnown RBP10.51□□□□□ -0.73
USP54-208ENST00000461520 GSX2Q9BZM3 304 aa10.51□□□□□ -0.73
USP54-208ENST00000461520 GTF3C3Q9Y5Q9 886 aa10.51□□□□□ -0.73
USP54-208ENST00000461520 ARHGEF10O15013 1369 aa10.51□□□□□ -0.73
USP54-208ENST00000461520 SLIT2O94813 1529 aa10.5□□□□□ -0.73
USP54-208ENST00000461520 M0R082 166 aa10.5□□□□□ -0.73
USP54-208ENST00000461520 PRMT3O60678 531 aa10.5□□□□□ -0.73
USP54-208ENST00000461520 GRNP28799 593 aaKnown RBP10.5□□□□□ -0.73
USP54-208ENST00000461520 FKBP5Q13451 457 aaPredicted RBP10.5□□□□□ -0.73
USP54-208ENST00000461520 C8orf86Q6ZUL3 223 aa10.5□□□□□ -0.73
USP54-208ENST00000461520 UNC5CLQ8IV45 518 aa10.5□□□□□ -0.73
USP54-208ENST00000461520 ZNF417Q8TAU3 575 aa10.5□□□□□ -0.73
USP54-208ENST00000461520 PMFBP1Q8TBY8 1022 aa10.5□□□□□ -0.73
USP54-208ENST00000461520 ZNF587Q96SQ5 575 aaPredicted RBP10.5□□□□□ -0.73
USP54-208ENST00000461520 HIRIP3Q9BW71 556 aaPredicted RBP10.5□□□□□ -0.73
USP54-208ENST00000461520 NOP53Q9NZM5 478 aaKnown RBP10.5□□□□□ -0.73
USP54-208ENST00000461520 USP32Q8NFA0 1604 aa10.5□□□□□ -0.73
USP54-208ENST00000461520 RGPD8O14715 1765 aaPredicted RBP10.49□□□□□ -0.73
USP54-208ENST00000461520 RALGAPBQ86X10 1494 aa10.49□□□□□ -0.73
USP54-208ENST00000461520 ALBP02768 609 aa10.49□□□□□ -0.73
USP54-208ENST00000461520 IDH3AP50213 366 aa10.49□□□□□ -0.73
USP54-208ENST00000461520 LRFN2Q9ULH4 789 aa10.49□□□□□ -0.73
USP54-208ENST00000461520 TULP4Q9NRJ4 1543 aa10.48□□□□□ -0.73
USP54-208ENST00000461520 INPP5BP32019 993 aa10.48□□□□□ -0.73
USP54-208ENST00000461520 ELOAQ14241 798 aaKnown RBP10.48□□□□□ -0.73
USP54-208ENST00000461520 C11orf91Q3C1V1 193 aa10.48□□□□□ -0.73
USP54-208ENST00000461520 MICALL1Q8N3F8 863 aa10.48□□□□□ -0.73
USP54-208ENST00000461520 UBE2OQ9C0C9 1292 aaKnown RBP10.48□□□□□ -0.73
USP54-208ENST00000461520 GPRASP1Q5JY77 1395 aa10.48□□□□□ -0.73
USP54-208ENST00000461520 BLMP54132 1417 aaPredicted RBP10.48□□□□□ -0.73
USP54-208ENST00000461520 PLCH1Q4KWH8 1693 aa10.47□□□□□ -0.73
USP54-208ENST00000461520 MICAL2O94851 1124 aa10.47□□□□□ -0.73
USP54-208ENST00000461520 CCINQ13939 588 aa10.47□□□□□ -0.73
USP54-208ENST00000461520 SWI5Q1ZZU3 235 aa10.47□□□□□ -0.73
USP54-208ENST00000461520 MYO19Q96H55 970 aa10.47□□□□□ -0.73
USP54-208ENST00000461520 PNMA5Q96PV4 448 aa10.47□□□□□ -0.73
USP54-208ENST00000461520 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.47□□□□□ -0.73
USP54-208ENST00000461520 PRR36Q9H6K5 1346 aa10.47□□□□□ -0.73
USP54-208ENST00000461520 C1QTNF9BB2RNN3 333 aa10.46□□□□□ -0.73
USP54-208ENST00000461520 NFKB1P19838 968 aa10.46□□□□□ -0.73
USP54-208ENST00000461520 COL9A3Q14050 684 aaPredicted RBP10.46□□□□□ -0.73
USP54-208ENST00000461520 OCLNQ16625 522 aa10.46□□□□□ -0.73
USP54-208ENST00000461520 DEFB132Q7Z7B7 95 aa10.46□□□□□ -0.73
USP54-208ENST00000461520 ABCA3Q99758 1704 aa10.46□□□□□ -0.74
USP54-208ENST00000461520 ARHGEF28Q8N1W1 1705 aaKnown RBP10.45□□□□□ -0.74
USP54-208ENST00000461520 NWD2Q9ULI1 1742 aa10.45□□□□□ -0.74
USP54-208ENST00000461520 VPS72Q15906 364 aa10.45□□□□□ -0.74
USP54-208ENST00000461520 COX20Q5RI15 118 aa10.45□□□□□ -0.74
USP54-208ENST00000461520 CD163Q86VB7 1156 aa10.45□□□□□ -0.74
USP54-208ENST00000461520 NGDNQ8NEJ9 315 aaKnown RBP10.45□□□□□ -0.74
USP54-208ENST00000461520 CCDC97Q96F63 343 aaPredicted RBP10.45□□□□□ -0.74
USP54-208ENST00000461520 IFT43Q96FT9 208 aa10.45□□□□□ -0.74
USP54-208ENST00000461520 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.45□□□□□ -0.742e-6■■■■■ 149.1
USP54-208ENST00000461520 USP20Q9Y2K6 914 aa10.45□□□□□ -0.74
USP54-208ENST00000461520 TRPM3Q9HCF6 1732 aaPredicted RBP10.44□□□□□ -0.74
USP54-208ENST00000461520 KIAA1210Q9ULL0 1709 aa10.44□□□□□ -0.74
USP54-208ENST00000461520 FAM83GA6ND36 823 aa10.44□□□□□ -0.74
USP54-208ENST00000461520 ATG7O95352 703 aa10.44□□□□□ -0.74
USP54-208ENST00000461520 EPB42P16452 691 aa10.44□□□□□ -0.74
USP54-208ENST00000461520 CHRNA4P43681 627 aa10.44□□□□□ -0.74
USP54-208ENST00000461520 SF3B2Q13435 895 aaKnown RBP10.44□□□□□ -0.74
USP54-208ENST00000461520 TMEM164Q5U3C3 297 aa10.44□□□□□ -0.74
USP54-208ENST00000461520 C20orf204Q6ZNR8 217 aa10.44□□□□□ -0.74
USP54-208ENST00000461520 KRT25Q7Z3Z0 450 aa10.44□□□□□ -0.74
USP54-208ENST00000461520 NUDT16Q96DE0 195 aaKnown RBP10.44□□□□□ -0.74
USP54-208ENST00000461520 SLC6A14Q9UN76 642 aa10.44□□□□□ -0.74
USP54-208ENST00000461520 ATP7BP35670 1465 aa10.43□□□□□ -0.74
USP54-208ENST00000461520 OPLAHO14841 1288 aa10.43□□□□□ -0.74
USP54-208ENST00000461520 ARSDP51689 593 aa10.43□□□□□ -0.74
USP54-208ENST00000461520 CAPN12Q6ZSI9 719 aa10.43□□□□□ -0.74
USP54-208ENST00000461520 CDK19Q9BWU1 502 aa10.43□□□□□ -0.74
USP54-208ENST00000461520 SAP130Q9H0E3 1048 aa10.43□□□□□ -0.74
USP54-208ENST00000461520 PRDM6Q9NQX0 595 aa10.43□□□□□ -0.74
USP54-208ENST00000461520 DNAJB12Q9NXW2 375 aaKnown RBP10.43□□□□□ -0.74
USP54-208ENST00000461520 CCDC9Q9Y3X0 531 aaKnown RBP10.43□□□□□ -0.74
USP54-208ENST00000461520 ALS2Q96Q42 1657 aa10.43□□□□□ -0.74
USP54-208ENST00000461520 FAM229AH3BQW9 127 aa10.42□□□□□ -0.74
USP54-208ENST00000461520 TARSP26639 723 aaKnown RBP10.42□□□□□ -0.74
USP54-208ENST00000461520 NUDT8Q8WV74 236 aa10.42□□□□□ -0.74
USP54-208ENST00000461520 MKNK1Q9BUB5 465 aa10.42□□□□□ -0.74
USP54-208ENST00000461520 EFCC1Q9HA90 598 aa10.42□□□□□ -0.74
USP54-208ENST00000461520 ZFATQ9P243 1243 aa10.42□□□□□ -0.74
USP54-208ENST00000461520 LRP5O75197 1615 aa10.42□□□□□ -0.74
USP54-208ENST00000461520 ITSN1Q15811 1721 aa10.41□□□□□ -0.74
USP54-208ENST00000461520 SASH3O75995 380 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms