RNA–Protein interactions for RNA: ENST00000460928.1

ATPAF1-203, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2

Gene ATPAF1, Length 869 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-203ENST00000460928 ATP2B4P23634 1241 aa7.12□□□□□ -1.27
ATPAF1-203ENST00000460928 CDC27P30260 824 aa7.12□□□□□ -1.27
ATPAF1-203ENST00000460928 SCNN1AP37088 669 aa7.12□□□□□ -1.27
ATPAF1-203ENST00000460928 ITGAEP38570 1179 aa7.12□□□□□ -1.27
ATPAF1-203ENST00000460928 FAM50AQ14320 339 aaKnown RBP7.12□□□□□ -1.27
ATPAF1-203ENST00000460928 CEP135Q66GS9 1140 aa7.12□□□□□ -1.27
ATPAF1-203ENST00000460928 CEP120Q8N960 986 aa7.12□□□□□ -1.27
ATPAF1-203ENST00000460928 FOXD4L4Q8WXT5 416 aaPredicted RBP7.12□□□□□ -1.27
ATPAF1-203ENST00000460928 ABCC1P33527 1531 aa7.11□□□□□ -1.27
ATPAF1-203ENST00000460928 IQSEC2Q5JU85 1478 aa7.11□□□□□ -1.27
ATPAF1-203ENST00000460928 YEATS2Q9ULM3 1422 aa7.11□□□□□ -1.27
ATPAF1-203ENST00000460928 RICTORQ6R327 1708 aa7.11□□□□□ -1.27
ATPAF1-203ENST00000460928 LINC01387J3KSC0 135 aa7.11□□□□□ -1.27
ATPAF1-203ENST00000460928 RPLP1P05386 114 aaKnown RBP7.11□□□□□ -1.27
ATPAF1-203ENST00000460928 CD68P34810 354 aaPredicted RBP7.11□□□□□ -1.27
ATPAF1-203ENST00000460928 B4GALNT3Q6L9W6 998 aa7.11□□□□□ -1.27
ATPAF1-203ENST00000460928 PBX4Q9BYU1 374 aa7.11□□□□□ -1.27
ATPAF1-203ENST00000460928 RASSF4Q9H2L5 321 aa7.11□□□□□ -1.27
ATPAF1-203ENST00000460928 ELP3Q9H9T3 547 aa7.11□□□□□ -1.27
ATPAF1-203ENST00000460928 ITSN2Q9NZM3 1697 aa7.11□□□□□ -1.27
ATPAF1-203ENST00000460928 ARAP3Q8WWN8 1544 aa7.11□□□□□ -1.27
ATPAF1-203ENST00000460928 DENND4BO75064 1496 aaPredicted RBP7.11□□□□□ -1.27
ATPAF1-203ENST00000460928 GSC2O15499 205 aa7.1□□□□□ -1.27
ATPAF1-203ENST00000460928 GLB1P16278 677 aa7.1□□□□□ -1.27
ATPAF1-203ENST00000460928 UVSSAQ2YD98 709 aa7.1□□□□□ -1.27
ATPAF1-203ENST00000460928 XKR5Q6UX68 686 aa7.1□□□□□ -1.27
ATPAF1-203ENST00000460928 AGGF1Q8N302 714 aaeCLIP7.1□□□□□ -1.27
ATPAF1-203ENST00000460928 KLHL23Q8NBE8 558 aa7.1□□□□□ -1.27
ATPAF1-203ENST00000460928 LACRTQ9GZZ8 138 aa7.1□□□□□ -1.27
ATPAF1-203ENST00000460928 ADAM19Q9H013 955 aa7.1□□□□□ -1.27
ATPAF1-203ENST00000460928 RAXQ9Y2V3 346 aa7.1□□□□□ -1.27
ATPAF1-203ENST00000460928 STRCQ7RTU9 1775 aa7.1□□□□□ -1.27
ATPAF1-203ENST00000460928 MBD5Q9P267 1494 aa7.1□□□□□ -1.27
ATPAF1-203ENST00000460928 SIGLEC1Q9BZZ2 1709 aa7.1□□□□□ -1.27
ATPAF1-203ENST00000460928 FGD6Q6ZV73 1430 aa7.1□□□□□ -1.27
ATPAF1-203ENST00000460928 POGZQ7Z3K3 1410 aa7.1□□□□□ -1.27
ATPAF1-203ENST00000460928 PTPN23Q9H3S7 1636 aa7.09□□□□□ -1.27
ATPAF1-203ENST00000460928 SRCAPQ6ZRS2 3230 aa7.09□□□□□ -1.27
ATPAF1-203ENST00000460928 FSCN2O14926 492 aa7.09□□□□□ -1.27
ATPAF1-203ENST00000460928 WISP1O95388 367 aa7.09□□□□□ -1.27
ATPAF1-203ENST00000460928 CYP2E1P05181 493 aaPredicted RBP7.09□□□□□ -1.27
ATPAF1-203ENST00000460928 CCDC27Q2M243 656 aa7.09□□□□□ -1.27
ATPAF1-203ENST00000460928 LCE3BQ5TA77 95 aa7.09□□□□□ -1.27
ATPAF1-203ENST00000460928 ADAMTSL4Q6UY14 1074 aa7.09□□□□□ -1.27
ATPAF1-203ENST00000460928 SND1Q7KZF4 910 aaKnown RBP eCLIP7.09□□□□□ -1.27
ATPAF1-203ENST00000460928 NCAPG2Q86XI2 1143 aa7.09□□□□□ -1.27
ATPAF1-203ENST00000460928 HELQQ8TDG4 1101 aa7.09□□□□□ -1.27
ATPAF1-203ENST00000460928 NUDT16Q96DE0 195 aaKnown RBP7.09□□□□□ -1.27
ATPAF1-203ENST00000460928 UBL7Q96S82 380 aaPredicted RBP7.09□□□□□ -1.27
ATPAF1-203ENST00000460928 CEP41Q9BYV8 373 aa7.09□□□□□ -1.27
ATPAF1-203ENST00000460928 TMEM63CQ9P1W3 806 aa7.09□□□□□ -1.27
ATPAF1-203ENST00000460928 SEPT3Q9UH03 358 aa7.09□□□□□ -1.27
ATPAF1-203ENST00000460928 GNEQ9Y223 722 aaKnown RBP7.09□□□□□ -1.27
ATPAF1-203ENST00000460928 CFAP74Q9C0B2 1584 aa7.08□□□□□ -1.28
ATPAF1-203ENST00000460928 ARID4BQ4LE39 1312 aaPredicted RBP7.08□□□□□ -1.28
ATPAF1-203ENST00000460928 PTPRAP18433 802 aa7.08□□□□□ -1.28
ATPAF1-203ENST00000460928 FAM117BQ6P1L5 589 aa7.08□□□□□ -1.28
ATPAF1-203ENST00000460928 WNT8BQ93098 351 aa7.08□□□□□ -1.28
ATPAF1-203ENST00000460928 KCNK4Q9NYG8 393 aa7.08□□□□□ -1.28
ATPAF1-203ENST00000460928 SALL4Q9UJQ4 1053 aa7.08□□□□□ -1.28
ATPAF1-203ENST00000460928 PTPRKQ15262 1439 aa7.08□□□□□ -1.28
ATPAF1-203ENST00000460928 PREX1Q8TCU6 1659 aa7.07□□□□□ -1.28
ATPAF1-203ENST00000460928 EPHA1P21709 976 aa7.07□□□□□ -1.28
ATPAF1-203ENST00000460928 MLECQ14165 292 aa7.07□□□□□ -1.28
ATPAF1-203ENST00000460928 TXNDC11Q6PKC3 985 aa7.07□□□□□ -1.28
ATPAF1-203ENST00000460928 ACAD11Q709F0 780 aa7.07□□□□□ -1.28
ATPAF1-203ENST00000460928 ZNF438Q7Z4V0 828 aa7.07□□□□□ -1.28
ATPAF1-203ENST00000460928 CCER1Q8TC90 406 aaPredicted RBP7.07□□□□□ -1.28
ATPAF1-203ENST00000460928 POP1Q99575 1024 aaKnown RBP7.07□□□□□ -1.28
ATPAF1-203ENST00000460928 LTBP4Q8N2S1 1624 aa7.07□□□□□ -1.28
ATPAF1-203ENST00000460928 ABCC5O15440 1437 aa7.07□□□□□ -1.28
ATPAF1-203ENST00000460928 SPAG9O60271 1321 aaKnown RBP7.06□□□□□ -1.28
ATPAF1-203ENST00000460928 ABCA6Q8N139 1617 aa7.06□□□□□ -1.28
ATPAF1-203ENST00000460928 KIDINS220Q9ULH0 1771 aa7.06□□□□□ -1.28
ATPAF1-203ENST00000460928 DHX15O43143 795 aaKnown RBP7.06□□□□□ -1.28
ATPAF1-203ENST00000460928 IGLV1-40P01703 118 aa7.06□□□□□ -1.28
ATPAF1-203ENST00000460928 CD97P48960 835 aa7.06□□□□□ -1.28
ATPAF1-203ENST00000460928 RBM25P49756 843 aaKnown RBP7.06□□□□□ -1.28
ATPAF1-203ENST00000460928 PHLDB3Q6NSJ2 640 aa7.06□□□□□ -1.28
ATPAF1-203ENST00000460928 KIAA1211Q6ZU35 1233 aa7.06□□□□□ -1.28
ATPAF1-203ENST00000460928 ATCAYQ86WG3 371 aa7.06□□□□□ -1.28
ATPAF1-203ENST00000460928 ARMC10Q8N2F6 343 aa7.06□□□□□ -1.28
ATPAF1-203ENST00000460928 FAM46AQ96IP4 442 aaKnown RBP7.06□□□□□ -1.28
ATPAF1-203ENST00000460928 SEC31BQ9NQW1 1179 aa7.06□□□□□ -1.28
ATPAF1-203ENST00000460928 CNTN3Q9P232 1028 aa7.06□□□□□ -1.28
ATPAF1-203ENST00000460928 TCOF1Q13428 1488 aaKnown RBP7.05□□□□□ -1.28
ATPAF1-203ENST00000460928 KDM5CP41229 1560 aa7.05□□□□□ -1.28
ATPAF1-203ENST00000460928 DIP2CQ9Y2E4 1556 aa7.05□□□□□ -1.28
ATPAF1-203ENST00000460928 MIA2Q96PC5 1412 aa7.05□□□□□ -1.28
ATPAF1-203ENST00000460928 KIAA1107Q9UPP5 1409 aa7.05□□□□□ -1.28
ATPAF1-203ENST00000460928 FAM177BA6PVY3 158 aa7.05□□□□□ -1.28
ATPAF1-203ENST00000460928 H3BRJ5 948 aa7.05□□□□□ -1.28
ATPAF1-203ENST00000460928 NFKBIEO00221 500 aa7.05□□□□□ -1.28
ATPAF1-203ENST00000460928 PCSK2P16519 638 aa7.05□□□□□ -1.28
ATPAF1-203ENST00000460928 SSFA2P28290 1259 aa7.05□□□□□ -1.28
ATPAF1-203ENST00000460928 PIP4K2BP78356 416 aa7.05□□□□□ -1.28
ATPAF1-203ENST00000460928 DUOXA2Q1HG44 320 aa7.05□□□□□ -1.28
ATPAF1-203ENST00000460928 TXNDC2Q86VQ3 553 aa7.05□□□□□ -1.28
ATPAF1-203ENST00000460928 EDEM1Q92611 657 aa7.05□□□□□ -1.28
ATPAF1-203ENST00000460928 ZNF428Q96B54 188 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms