RNA–Protein interactions for RNA: ENST00000460265.5

LMNB1-203, Transcript of lamin B1, humanhuman

TSL 1 (best)

Gene LMNB1, Length 3,475 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-203ENST00000460265 SLIT3O75094 1523 aa17.89■□□□□ 0.45
LMNB1-203ENST00000460265 LMTK3Q96Q04 1460 aa17.89■□□□□ 0.45
LMNB1-203ENST00000460265 AKAP17AQ02040 695 aaKnown RBP17.89■□□□□ 0.45
LMNB1-203ENST00000460265 NACAP1Q9BZK3 213 aa17.89■□□□□ 0.45
LMNB1-203ENST00000460265 DDX19AQ9NUU7 478 aaKnown RBP17.89■□□□□ 0.45
LMNB1-203ENST00000460265 CPDO75976 1380 aa17.89■□□□□ 0.45
LMNB1-203ENST00000460265 SUSD4Q5VX71 490 aa17.88■□□□□ 0.45
LMNB1-203ENST00000460265 DENND2AQ9ULE3 1009 aa17.88■□□□□ 0.45
LMNB1-203ENST00000460265 PFKFB2O60825 505 aa17.88■□□□□ 0.45
LMNB1-203ENST00000460265 CRKLP46109 303 aaKnown RBP17.88■□□□□ 0.45
LMNB1-203ENST00000460265 CCDC152Q4G0S7 254 aa17.88■□□□□ 0.45
LMNB1-203ENST00000460265 CALCOCO1Q9P1Z2 691 aa17.88■□□□□ 0.45
LMNB1-203ENST00000460265 SLC4A4Q9Y6R1 1079 aa17.88■□□□□ 0.45
LMNB1-203ENST00000460265 COL15A1P39059 1388 aa17.88■□□□□ 0.45
LMNB1-203ENST00000460265 CAMTA1Q9Y6Y1 1673 aa17.88■□□□□ 0.45
LMNB1-203ENST00000460265 KCNQ2O43526 872 aa17.88■□□□□ 0.45
LMNB1-203ENST00000460265 SLFN14P0C7P3 912 aa17.88■□□□□ 0.45
LMNB1-203ENST00000460265 PIH1D3Q9NQM4 214 aaKnown RBP17.88■□□□□ 0.45
LMNB1-203ENST00000460265 CCDC87Q9NVE4 849 aa17.88■□□□□ 0.45
LMNB1-203ENST00000460265 LOC102724428A0A0B4J2F2 783 aa17.87■□□□□ 0.45
LMNB1-203ENST00000460265 SIK1P57059 783 aa17.87■□□□□ 0.45
LMNB1-203ENST00000460265 CMTR1Q8N1G2 835 aaKnown RBP17.87■□□□□ 0.45
LMNB1-203ENST00000460265 SLC26A6Q9BXS9 759 aa17.87■□□□□ 0.45
LMNB1-203ENST00000460265 SLC12A7Q9Y666 1083 aa17.87■□□□□ 0.45
LMNB1-203ENST00000460265 GOLGA8AA7E2F4 631 aa17.87■□□□□ 0.45
LMNB1-203ENST00000460265 NKX1-1Q15270 411 aaPredicted RBP17.87■□□□□ 0.45
LMNB1-203ENST00000460265 PUM3Q15397 648 aaKnown RBP17.87■□□□□ 0.45
LMNB1-203ENST00000460265 SPTLC3Q9NUV7 552 aa17.87■□□□□ 0.45
LMNB1-203ENST00000460265 PDE6AP16499 860 aa17.86■□□□□ 0.45
LMNB1-203ENST00000460265 CYP7A1P22680 504 aa17.86■□□□□ 0.45
LMNB1-203ENST00000460265 UVSSAQ2YD98 709 aa17.86■□□□□ 0.45
LMNB1-203ENST00000460265 USPL1Q5W0Q7 1092 aa17.86■□□□□ 0.45
LMNB1-203ENST00000460265 FAM200AQ8TCP9 573 aa17.86■□□□□ 0.45
LMNB1-203ENST00000460265 AIFM3Q96NN9 605 aa17.86■□□□□ 0.45
LMNB1-203ENST00000460265 ALG1Q9BT22 464 aa17.86■□□□□ 0.45
LMNB1-203ENST00000460265 UQCRFS1P1P0C7P4 283 aa17.86■□□□□ 0.45
LMNB1-203ENST00000460265 SART3Q15020 963 aaKnown RBP17.86■□□□□ 0.45
LMNB1-203ENST00000460265 CREBRFQ8IUR6 639 aa17.86■□□□□ 0.45
LMNB1-203ENST00000460265 RANBP6O60518 1105 aaKnown RBP17.86■□□□□ 0.45
LMNB1-203ENST00000460265 SPATA5Q8NB90 893 aa17.86■□□□□ 0.45
LMNB1-203ENST00000460265 SLC4A9Q96Q91 983 aa17.86■□□□□ 0.45
LMNB1-203ENST00000460265 MFSD6Q6ZSS7 791 aa17.85■□□□□ 0.45
LMNB1-203ENST00000460265 LPIN2Q92539 896 aa17.85■□□□□ 0.45
LMNB1-203ENST00000460265 KCNB2Q92953 911 aa17.85■□□□□ 0.45
LMNB1-203ENST00000460265 PRKAB2O43741 272 aa17.85■□□□□ 0.45
LMNB1-203ENST00000460265 IARSP41252 1262 aaKnown RBP17.85■□□□□ 0.45
LMNB1-203ENST00000460265 UBAC1Q9BSL1 405 aa17.85■□□□□ 0.45
LMNB1-203ENST00000460265 ZBTB43O43298 467 aa17.85■□□□□ 0.45
LMNB1-203ENST00000460265 GYG1P46976 350 aa17.85■□□□□ 0.45
LMNB1-203ENST00000460265 SAFBQ15424 915 aaKnown RBP eCLIP17.85■□□□□ 0.45
LMNB1-203ENST00000460265 TERF2Q15554 542 aa17.85■□□□□ 0.45
LMNB1-203ENST00000460265 PYCARDQ9ULZ3 195 aa17.85■□□□□ 0.45
LMNB1-203ENST00000460265 RIPOR2Q9Y4F9 1068 aa17.85■□□□□ 0.45
LMNB1-203ENST00000460265 LRRC37A3O60309 1634 aa17.84■□□□□ 0.45
LMNB1-203ENST00000460265 PRDM1O75626 825 aa17.84■□□□□ 0.45
LMNB1-203ENST00000460265 PGBD1Q96JS3 809 aa17.84■□□□□ 0.45
LMNB1-203ENST00000460265 GNL3LQ9NVN8 582 aaKnown RBP17.84■□□□□ 0.45
LMNB1-203ENST00000460265 NCBP1Q09161 790 aaKnown RBP17.84■□□□□ 0.45
LMNB1-203ENST00000460265 ZNF652Q9Y2D9 606 aa17.84■□□□□ 0.45
LMNB1-203ENST00000460265 KDM4FA0A1W2PPD8 638 aa17.84■□□□□ 0.45
LMNB1-203ENST00000460265 CCDC186Q7Z3E2 898 aa17.84■□□□□ 0.45
LMNB1-203ENST00000460265 KRT222Q8N1A0 295 aa17.84■□□□□ 0.45
LMNB1-203ENST00000460265 TMEM87AQ8NBN3 555 aa17.84■□□□□ 0.45
LMNB1-203ENST00000460265 IL6STP40189 918 aaPredicted RBP17.83■□□□□ 0.45
LMNB1-203ENST00000460265 TSGA10IPQ3SY00 556 aa17.83■□□□□ 0.45
LMNB1-203ENST00000460265 KIAA1524Q8TCG1 905 aa17.83■□□□□ 0.45
LMNB1-203ENST00000460265 ZFP91Q96JP5 570 aaPredicted RBP17.83■□□□□ 0.45
LMNB1-203ENST00000460265 CBX8Q9HC52 389 aa17.83■□□□□ 0.45
LMNB1-203ENST00000460265 COL5A2P05997 1499 aaPredicted RBP17.83■□□□□ 0.44
LMNB1-203ENST00000460265 C16orf45Q96MC5 204 aaPredicted RBP17.83■□□□□ 0.44
LMNB1-203ENST00000460265 SMC2O95347 1197 aa17.82■□□□□ 0.44
LMNB1-203ENST00000460265 RESTQ13127 1097 aa17.82■□□□□ 0.44
LMNB1-203ENST00000460265 CAVIN4Q5BKX8 364 aa17.82■□□□□ 0.44
LMNB1-203ENST00000460265 ANKRD18AQ8IVF6 992 aa17.82■□□□□ 0.44
LMNB1-203ENST00000460265 SDR42E1Q8WUS8 393 aa17.82■□□□□ 0.44
LMNB1-203ENST00000460265 LLPHQ9BRT6 129 aaKnown RBP17.82■□□□□ 0.44
LMNB1-203ENST00000460265 ANGEL1Q9UNK9 670 aaKnown RBP17.82■□□□□ 0.44
LMNB1-203ENST00000460265 hCG_1642624A0A1W2PR95 340 aa17.82■□□□□ 0.44
LMNB1-203ENST00000460265 PTGS1P23219 599 aa17.82■□□□□ 0.44
LMNB1-203ENST00000460265 NAA30Q147X3 362 aaPredicted RBP17.82■□□□□ 0.44
LMNB1-203ENST00000460265 TRIM28Q13263 835 aaKnown RBP17.82■□□□□ 0.44
LMNB1-203ENST00000460265 CDC5LQ99459 802 aaKnown RBP17.82■□□□□ 0.44
LMNB1-203ENST00000460265 DDX41Q9UJV9 622 aaKnown RBP17.82■□□□□ 0.44
LMNB1-203ENST00000460265 ZPR1O75312 459 aa17.81■□□□□ 0.44
LMNB1-203ENST00000460265 ADD2P35612 726 aa17.81■□□□□ 0.44
LMNB1-203ENST00000460265 RASGRF1Q13972 1273 aa17.81■□□□□ 0.44
LMNB1-203ENST00000460265 HSP90AA4PQ58FG1 418 aa17.81■□□□□ 0.44
LMNB1-203ENST00000460265 TRIM22Q8IYM9 498 aa17.81■□□□□ 0.44
LMNB1-203ENST00000460265 ZNF274Q96GC6 653 aaPredicted RBP17.81■□□□□ 0.44
LMNB1-203ENST00000460265 PDILTQ8N807 584 aa17.81■□□□□ 0.44
LMNB1-203ENST00000460265 TFCP2L1Q9NZI6 479 aa17.81■□□□□ 0.44
LMNB1-203ENST00000460265 CTIFO43310 598 aaKnown RBP17.81■□□□□ 0.44
LMNB1-203ENST00000460265 CDKL5O76039 1030 aa17.81■□□□□ 0.44
LMNB1-203ENST00000460265 CTDNEP1O95476 244 aa17.81■□□□□ 0.44
LMNB1-203ENST00000460265 SPECC1Q5M775 1068 aa17.81■□□□□ 0.44
LMNB1-203ENST00000460265 CCDC112Q8NEF3 446 aa17.81■□□□□ 0.44
LMNB1-203ENST00000460265 ZBTB9Q96C00 473 aa17.81■□□□□ 0.44
LMNB1-203ENST00000460265 SPTLC2O15270 562 aa17.8■□□□□ 0.44
LMNB1-203ENST00000460265 CSF1RP07333 972 aa17.8■□□□□ 0.44
LMNB1-203ENST00000460265 NBPF5PQ86XG9 351 aaPredicted RBP17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms