RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 GPATCH11Q8N954 259 aa12.46□□□□□ -0.42
USP39-210ENST00000459775 TMX4Q9H1E5 349 aaPredicted RBP12.46□□□□□ -0.42
USP39-210ENST00000459775 CD209Q9NNX6 404 aa12.46□□□□□ -0.42
USP39-210ENST00000459775 RNF181Q9P0P0 153 aa12.46□□□□□ -0.42
USP39-210ENST00000459775 ABCF2Q9UG63 623 aa12.46□□□□□ -0.42
USP39-210ENST00000459775 LRRC37AA6NMS7 1700 aa12.45□□□□□ -0.42
USP39-210ENST00000459775 CAPN15O75808 1086 aa12.45□□□□□ -0.42
USP39-210ENST00000459775 CCDC129Q6ZRS4 1044 aa12.45□□□□□ -0.42
USP39-210ENST00000459775 KBTBD3Q8NAB2 608 aa12.45□□□□□ -0.42
USP39-210ENST00000459775 ZNF512BQ96KM6 892 aaPredicted RBP12.45□□□□□ -0.42
USP39-210ENST00000459775 ZC3H12CQ9C0D7 883 aaKnown RBP12.45□□□□□ -0.42
USP39-210ENST00000459775 SNED1Q8TER0 1413 aa12.45□□□□□ -0.42
USP39-210ENST00000459775 LTBP1Q14766 1721 aa12.45□□□□□ -0.42
USP39-210ENST00000459775 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.44□□□□□ -0.42
USP39-210ENST00000459775 ARAP2Q8WZ64 1704 aa12.44□□□□□ -0.42
USP39-210ENST00000459775 TDRD7Q8NHU6 1098 aaKnown RBP12.44□□□□□ -0.42
USP39-210ENST00000459775 FBXW7Q969H0 707 aa12.44□□□□□ -0.42
USP39-210ENST00000459775 ESYT1Q9BSJ8 1104 aa12.44□□□□□ -0.42
USP39-210ENST00000459775 DIAPH3Q9NSV4 1193 aa12.44□□□□□ -0.42
USP39-210ENST00000459775 GNL3LQ9NVN8 582 aaKnown RBP12.44□□□□□ -0.42
USP39-210ENST00000459775 HSPA1AP0DMV8 641 aaKnown RBP12.43□□□□□ -0.42
USP39-210ENST00000459775 HSPA1BP0DMV9 641 aaKnown RBP12.43□□□□□ -0.42
USP39-210ENST00000459775 CCDC93Q567U6 631 aa12.43□□□□□ -0.42
USP39-210ENST00000459775 ZNF804AQ7Z570 1209 aa12.43□□□□□ -0.42
USP39-210ENST00000459775 ZNF589Q86UQ0 364 aaPredicted RBP12.43□□□□□ -0.42
USP39-210ENST00000459775 RRAGCQ9HB90 399 aa12.43□□□□□ -0.42
USP39-210ENST00000459775 AKAP11Q9UKA4 1901 aa12.43□□□□□ -0.42
USP39-210ENST00000459775 MED23Q9ULK4 1368 aa12.43□□□□□ -0.42
USP39-210ENST00000459775 PRDX5P30044 214 aa12.43□□□□□ -0.42
USP39-210ENST00000459775 GTF2IP78347 998 aa12.43□□□□□ -0.42
USP39-210ENST00000459775 SLC9C2Q5TAH2 1124 aa12.43□□□□□ -0.42
USP39-210ENST00000459775 C15orf52Q6ZUT6 534 aaKnown RBP12.43□□□□□ -0.42
USP39-210ENST00000459775 ZNF384Q8TF68 577 aa12.43□□□□□ -0.42
USP39-210ENST00000459775 NFKBIEO00221 500 aa12.42□□□□□ -0.42
USP39-210ENST00000459775 PPIP5K2O43314 1243 aa12.42□□□□□ -0.42
USP39-210ENST00000459775 VEGFAP15692 232 aaPredicted RBP12.42□□□□□ -0.42
USP39-210ENST00000459775 RASSF7Q02833 373 aa12.42□□□□□ -0.42
USP39-210ENST00000459775 ADGRA1Q86SQ6 560 aa12.42□□□□□ -0.42
USP39-210ENST00000459775 MAGEB6Q8N7X4 407 aa12.42□□□□□ -0.42
USP39-210ENST00000459775 OSBP2Q969R2 916 aa12.42□□□□□ -0.42
USP39-210ENST00000459775 RTFDC1Q9BY42 306 aaPredicted RBP12.42□□□□□ -0.42
USP39-210ENST00000459775 LRP2BPQ9P2M1 347 aa12.42□□□□□ -0.42
USP39-210ENST00000459775 DENND2AQ9ULE3 1009 aa12.42□□□□□ -0.42
USP39-210ENST00000459775 DLEC1Q9Y238 1755 aa12.42□□□□□ -0.42
USP39-210ENST00000459775 M0R2C6 588 aa12.41□□□□□ -0.42
USP39-210ENST00000459775 IL1R1P14778 569 aa12.41□□□□□ -0.42
USP39-210ENST00000459775 FOXD4L5Q5VV16 416 aaPredicted RBP12.41□□□□□ -0.42
USP39-210ENST00000459775 FOXD4L4Q8WXT5 416 aaPredicted RBP12.41□□□□□ -0.42
USP39-210ENST00000459775 PUS7LQ9H0K6 701 aaKnown RBP12.41□□□□□ -0.42
USP39-210ENST00000459775 RAI14Q9P0K7 980 aa12.41□□□□□ -0.42
USP39-210ENST00000459775 COL4A5P29400 1685 aa12.41□□□□□ -0.42
USP39-210ENST00000459775 YDJCA8MPS7 323 aa12.41□□□□□ -0.42
USP39-210ENST00000459775 G3V3G9 751 aa12.41□□□□□ -0.42
USP39-210ENST00000459775 RNF113AO15541 343 aaKnown RBP12.41□□□□□ -0.42
USP39-210ENST00000459775 SGSM2O43147 1006 aa12.41□□□□□ -0.42
USP39-210ENST00000459775 PDE6AP16499 860 aa12.41□□□□□ -0.42
USP39-210ENST00000459775 FAM193AP78312 1265 aa12.41□□□□□ -0.42
USP39-210ENST00000459775 PTH1RQ03431 593 aa12.41□□□□□ -0.42
USP39-210ENST00000459775 DCAF8Q5TAQ9 597 aa12.41□□□□□ -0.42
USP39-210ENST00000459775 ANO2Q9NQ90 1003 aa12.41□□□□□ -0.42
USP39-210ENST00000459775 TIAM2Q8IVF5 1701 aa12.4□□□□□ -0.42
USP39-210ENST00000459775 SBF1O95248 1867 aa12.4□□□□□ -0.42
USP39-210ENST00000459775 F8W031 263 aaPredicted RBP12.4□□□□□ -0.42
USP39-210ENST00000459775 ECE2O60344 883 aa12.4□□□□□ -0.42
USP39-210ENST00000459775 LMNB1P20700 586 aa12.4□□□□□ -0.42
USP39-210ENST00000459775 HTRA3P83110 453 aa12.4□□□□□ -0.42
USP39-210ENST00000459775 KIAA2012Q0VF49 1180 aa12.4□□□□□ -0.42
USP39-210ENST00000459775 VPS53Q5VIR6 699 aa12.4□□□□□ -0.42
USP39-210ENST00000459775 CASC1Q6TDU7 716 aa12.4□□□□□ -0.42
USP39-210ENST00000459775 RTKN2Q8IZC4 609 aa12.4□□□□□ -0.42
USP39-210ENST00000459775 CERS5Q8N5B7 392 aa12.4□□□□□ -0.42
USP39-210ENST00000459775 MIGA1Q8NAN2 632 aa12.4□□□□□ -0.42
USP39-210ENST00000459775 ZNF532Q9HCE3 1301 aa12.4□□□□□ -0.42
USP39-210ENST00000459775 MYO5AQ9Y4I1 1855 aaKnown RBP12.4□□□□□ -0.42
USP39-210ENST00000459775 GLTPD2A6NH11 291 aa12.4□□□□□ -0.43
USP39-210ENST00000459775 ADD2P35612 726 aa12.4□□□□□ -0.43
USP39-210ENST00000459775 EYA3Q99504 573 aa12.4□□□□□ -0.43
USP39-210ENST00000459775 COA1Q9GZY4 146 aa12.4□□□□□ -0.43
USP39-210ENST00000459775 RBM19Q9Y4C8 960 aaKnown RBP12.4□□□□□ -0.43
USP39-210ENST00000459775 MAST3O60307 1309 aa12.39□□□□□ -0.43
USP39-210ENST00000459775 TCRBV5S4A2TA0A5A2 114 aa12.39□□□□□ -0.43
USP39-210ENST00000459775 MECOMQ03112 1051 aa12.39□□□□□ -0.43
USP39-210ENST00000459775 DIXDC1Q155Q3 683 aa12.39□□□□□ -0.43
USP39-210ENST00000459775 MFSD14BQ5SR56 506 aa12.39□□□□□ -0.43
USP39-210ENST00000459775 ZMYM1Q5SVZ6 1142 aa12.39□□□□□ -0.43
USP39-210ENST00000459775 TTLL5Q6EMB2 1281 aa12.39□□□□□ -0.43
USP39-210ENST00000459775 LARGE2Q8N3Y3 721 aa12.39□□□□□ -0.43
USP39-210ENST00000459775 RAD17O75943 681 aa12.38□□□□□ -0.43
USP39-210ENST00000459775 TTF1Q15361 905 aaPredicted RBP12.38□□□□□ -0.43
USP39-210ENST00000459775 USP26Q9BXU7 913 aa12.38□□□□□ -0.43
USP39-210ENST00000459775 CLGNO14967 610 aa12.38□□□□□ -0.43
USP39-210ENST00000459775 SEMA3EO15041 775 aa12.38□□□□□ -0.43
USP39-210ENST00000459775 MAP3K12Q12852 859 aa12.38□□□□□ -0.43
USP39-210ENST00000459775 LSG1Q9H089 658 aaKnown RBP12.38□□□□□ -0.43
USP39-210ENST00000459775 TAOK3Q9H2K8 898 aa12.38□□□□□ -0.43
USP39-210ENST00000459775 CYP7A1P22680 504 aa12.37□□□□□ -0.43
USP39-210ENST00000459775 DYNLL1P63167 89 aaKnown RBP12.37□□□□□ -0.43
USP39-210ENST00000459775 MCMDC2Q4G0Z9 681 aa12.37□□□□□ -0.43
USP39-210ENST00000459775 NSUN4Q96CB9 384 aaKnown RBP12.37□□□□□ -0.43
USP39-210ENST00000459775 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.37□□□□□ -0.431e-6■■■□□ 14.8
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms