RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 KRTAP4-12Q9BQ66 201 aa7.25□□□□□ -1.25
VPS41-209ENST00000457055 GGNBP2Q9H3C7 697 aa7.25□□□□□ -1.25
VPS41-209ENST00000457055 CADPSQ9ULU8 1353 aa7.24□□□□□ -1.25
VPS41-209ENST00000457055 PREPP48147 710 aa7.24□□□□□ -1.25
VPS41-209ENST00000457055 NOL8Q76FK4 1167 aaKnown RBP7.24□□□□□ -1.25
VPS41-209ENST00000457055 FAM20CQ8IXL6 584 aa7.24□□□□□ -1.25
VPS41-209ENST00000457055 PMEPA1Q969W9 287 aa7.24□□□□□ -1.25
VPS41-209ENST00000457055 DBNDD2Q9BQY9 259 aa7.24□□□□□ -1.25
VPS41-209ENST00000457055 RUSC1Q9BVN2 902 aa7.24□□□□□ -1.25
VPS41-209ENST00000457055 RNF208Q9H0X6 261 aa7.24□□□□□ -1.25
VPS41-209ENST00000457055 CHRDQ9H2X0 955 aa7.24□□□□□ -1.25
VPS41-209ENST00000457055 KCNF1Q9H3M0 494 aa7.24□□□□□ -1.25
VPS41-209ENST00000457055 SOX13Q9UN79 622 aa7.24□□□□□ -1.25
VPS41-209ENST00000457055 ZNF608Q9ULD9 1512 aaPredicted RBP7.23□□□□□ -1.25
VPS41-209ENST00000457055 LOC102724159A0A0B4J2E5 919 aa7.23□□□□□ -1.25
VPS41-209ENST00000457055 BMP3P12645 472 aa7.23□□□□□ -1.25
VPS41-209ENST00000457055 DEKP35659 375 aaKnown RBP7.23□□□□□ -1.25
VPS41-209ENST00000457055 GRIK1P39086 918 aa7.23□□□□□ -1.25
VPS41-209ENST00000457055 ARL4DP49703 201 aa7.23□□□□□ -1.25
VPS41-209ENST00000457055 PWP2Q15269 919 aaKnown RBP7.23□□□□□ -1.25
VPS41-209ENST00000457055 FDX2Q6P4F2 183 aa7.23□□□□□ -1.25
VPS41-209ENST00000457055 KRTAP1-3Q8IUG1 177 aa7.23□□□□□ -1.25
VPS41-209ENST00000457055 CLEC10AQ8IUN9 316 aa7.23□□□□□ -1.25
VPS41-209ENST00000457055 GTF3C2Q8WUA4 911 aaPredicted RBP7.23□□□□□ -1.25
VPS41-209ENST00000457055 YTHDC1Q96MU7 727 aaKnown RBP7.23□□□□□ -1.25
VPS41-209ENST00000457055 C19orf57Q0VDD7 668 aa7.22□□□□□ -1.25
VPS41-209ENST00000457055 INTS5Q6P9B9 1019 aaKnown RBP7.22□□□□□ -1.25
VPS41-209ENST00000457055 BEND4Q6ZU67 534 aa7.22□□□□□ -1.25
VPS41-209ENST00000457055 TMEM102Q8N9M5 508 aaPredicted RBP7.22□□□□□ -1.25
VPS41-209ENST00000457055 OSMRQ99650 979 aa7.22□□□□□ -1.25
VPS41-209ENST00000457055 FAM83CQ9BQN1 747 aa7.22□□□□□ -1.25
VPS41-209ENST00000457055 POLIQ9UNA4 740 aa7.22□□□□□ -1.25
VPS41-209ENST00000457055 HIF3AQ9Y2N7 669 aa7.22□□□□□ -1.25
VPS41-209ENST00000457055 GAS2O43903 313 aaKnown RBP7.21□□□□□ -1.26
VPS41-209ENST00000457055 IRAK1P51617 712 aa7.21□□□□□ -1.26
VPS41-209ENST00000457055 GP2P55259 537 aaKnown RBP7.21□□□□□ -1.26
VPS41-209ENST00000457055 MTMR3Q13615 1198 aa7.21□□□□□ -1.26
VPS41-209ENST00000457055 LCE3BQ5TA77 95 aa7.21□□□□□ -1.26
VPS41-209ENST00000457055 ALKBH2Q6NS38 261 aa7.21□□□□□ -1.26
VPS41-209ENST00000457055 BSNDQ8WZ55 320 aa7.21□□□□□ -1.26
VPS41-209ENST00000457055 ZKSCAN3Q9BRR0 538 aa7.21□□□□□ -1.26
VPS41-209ENST00000457055 RIPOR2Q9Y4F9 1068 aa7.21□□□□□ -1.26
VPS41-209ENST00000457055 COL17A1Q9UMD9 1497 aaPredicted RBP7.2□□□□□ -1.26
VPS41-209ENST00000457055 CEP164Q9UPV0 1460 aa7.2□□□□□ -1.26
VPS41-209ENST00000457055 EREGO14944 169 aa7.2□□□□□ -1.26
VPS41-209ENST00000457055 PHACTR2O75167 634 aa7.2□□□□□ -1.26
VPS41-209ENST00000457055 EDN3P14138 238 aa7.2□□□□□ -1.26
VPS41-209ENST00000457055 SPINK2P20155 84 aa7.2□□□□□ -1.26
VPS41-209ENST00000457055 IKBKEQ14164 716 aa7.2□□□□□ -1.26
VPS41-209ENST00000457055 HGSNATQ68CP4 663 aa7.2□□□□□ -1.26
VPS41-209ENST00000457055 SHKBP1Q8TBC3 707 aa7.2□□□□□ -1.26
VPS41-209ENST00000457055 SNX29Q8TEQ0 813 aa7.2□□□□□ -1.26
VPS41-209ENST00000457055 NXPE3Q969Y0 559 aa7.2□□□□□ -1.26
VPS41-209ENST00000457055 OAS3Q9Y6K5 1087 aaKnown RBP7.2□□□□□ -1.26
VPS41-209ENST00000457055 URB2Q14146 1524 aaKnown RBP7.19□□□□□ -1.26
VPS41-209ENST00000457055 PRR19A6NJB7 356 aa7.19□□□□□ -1.26
VPS41-209ENST00000457055 TNFRSF21O75509 655 aa7.19□□□□□ -1.26
VPS41-209ENST00000457055 SSFA2P28290 1259 aa7.19□□□□□ -1.26
VPS41-209ENST00000457055 OS9Q13438 667 aaPredicted RBP7.19□□□□□ -1.26
VPS41-209ENST00000457055 SECISBP2LQ93073 1101 aaKnown RBP7.19□□□□□ -1.26
VPS41-209ENST00000457055 USP26Q9BXU7 913 aa7.19□□□□□ -1.26
VPS41-209ENST00000457055 MYH16Q9H6N6 1097 aa7.19□□□□□ -1.26
VPS41-209ENST00000457055 AMOTL2Q9Y2J4 779 aa7.19□□□□□ -1.26
VPS41-209ENST00000457055 MEGF11A6BM72 1044 aa7.18□□□□□ -1.26
VPS41-209ENST00000457055 TMEM88BA6NKF7 163 aa7.18□□□□□ -1.26
VPS41-209ENST00000457055 SOX1O00570 391 aaPredicted RBP7.18□□□□□ -1.26
VPS41-209ENST00000457055 PAX4O43316 350 aa7.18□□□□□ -1.26
VPS41-209ENST00000457055 EHHADHQ08426 723 aa7.18□□□□□ -1.26
VPS41-209ENST00000457055 NUTM2GQ5VZR2 741 aa7.18□□□□□ -1.26
VPS41-209ENST00000457055 VN1R5Q7Z5H4 357 aa7.18□□□□□ -1.26
VPS41-209ENST00000457055 FTSJ3Q8IY81 847 aaKnown RBP7.18□□□□□ -1.26
VPS41-209ENST00000457055 ASAP3Q8TDY4 903 aa7.18□□□□□ -1.26
VPS41-209ENST00000457055 FOXD3Q9UJU5 478 aaPredicted RBP7.18□□□□□ -1.26
VPS41-209ENST00000457055 FANCD2Q9BXW9 1451 aa7.17□□□□□ -1.26
VPS41-209ENST00000457055 SMARCA5O60264 1052 aaPredicted RBP7.17□□□□□ -1.26
VPS41-209ENST00000457055 MAP4P27816 1152 aaKnown RBP7.17□□□□□ -1.26
VPS41-209ENST00000457055 USP5P45974 858 aa7.17□□□□□ -1.26
VPS41-209ENST00000457055 FAM50AQ14320 339 aaKnown RBP7.17□□□□□ -1.26
VPS41-209ENST00000457055 SGO2Q562F6 1265 aa7.17□□□□□ -1.26
VPS41-209ENST00000457055 DTX1Q86Y01 620 aa7.17□□□□□ -1.26
VPS41-209ENST00000457055 LOC100289279A0A1B0GTE1 492 aa7.16□□□□□ -1.26
VPS41-209ENST00000457055 WDR64B1ANS9 1081 aa7.16□□□□□ -1.26
VPS41-209ENST00000457055 ADAMTS4O75173 837 aa7.16□□□□□ -1.26
VPS41-209ENST00000457055 FAM13AO94988 1023 aa7.16□□□□□ -1.26
VPS41-209ENST00000457055 NPR3P17342 541 aa7.16□□□□□ -1.26
VPS41-209ENST00000457055 RXRBP28702 533 aa7.16□□□□□ -1.26
VPS41-209ENST00000457055 FAM43BQ6ZT52 329 aaPredicted RBP7.16□□□□□ -1.26
VPS41-209ENST00000457055 C12orf50Q8NA57 414 aaPredicted RBP7.16□□□□□ -1.26
VPS41-209ENST00000457055 SPATA32Q96LK8 384 aa7.16□□□□□ -1.26
VPS41-209ENST00000457055 MFSD14AQ96MC6 490 aa7.16□□□□□ -1.26
VPS41-209ENST00000457055 TMPRSS13Q9BYE2 586 aa7.16□□□□□ -1.26
VPS41-209ENST00000457055 BHLHE41Q9C0J9 482 aaPredicted RBP7.16□□□□□ -1.26
VPS41-209ENST00000457055 SOX17Q9H6I2 414 aaPredicted RBP7.16□□□□□ -1.26
VPS41-209ENST00000457055 GOLGA2P5Q9HBQ8 144 aa7.16□□□□□ -1.26
VPS41-209ENST00000457055 CYP4F12Q9HCS2 524 aa7.16□□□□□ -1.26
VPS41-209ENST00000457055 LAS1LQ9Y4W2 734 aaKnown RBP7.16□□□□□ -1.26
VPS41-209ENST00000457055 SPTY2D1Q68D10 685 aaPredicted RBP7.15□□□□□ -1.26
VPS41-209ENST00000457055 TMTC2Q8N394 836 aa7.15□□□□□ -1.26
VPS41-209ENST00000457055 SMG8Q8ND04 991 aaKnown RBP7.15□□□□□ -1.26
VPS41-209ENST00000457055 LATS2Q9NRM7 1088 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms