RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 PDE8BO95263 885 aa16.69■□□□□ 0.26
HMGB3-204ENST00000448905 SP3Q02447 781 aa16.69■□□□□ 0.26
HMGB3-204ENST00000448905 OPTNQ96CV9 577 aa16.69■□□□□ 0.26
HMGB3-204ENST00000448905 BICC1Q9H694 974 aaKnown RBP16.69■□□□□ 0.26
HMGB3-204ENST00000448905 ELP3Q9H9T3 547 aa16.69■□□□□ 0.26
HMGB3-204ENST00000448905 TMOD2Q9NZR1 351 aa16.69■□□□□ 0.26
HMGB3-204ENST00000448905 UTYO14607 1347 aa16.69■□□□□ 0.26
HMGB3-204ENST00000448905 MYH3P11055 1940 aa16.68■□□□□ 0.26
HMGB3-204ENST00000448905 IFIT1P09914 478 aaKnown RBP16.68■□□□□ 0.26
HMGB3-204ENST00000448905 GTF2A2P52657 109 aa16.68■□□□□ 0.26
HMGB3-204ENST00000448905 CHAF1AQ13111 956 aaPredicted RBP16.68■□□□□ 0.26
HMGB3-204ENST00000448905 RABL6Q3YEC7 729 aaPredicted RBP16.68■□□□□ 0.26
HMGB3-204ENST00000448905 OTOP1Q7RTM1 612 aa16.68■□□□□ 0.26
HMGB3-204ENST00000448905 TEKT1Q969V4 418 aa16.68■□□□□ 0.26
HMGB3-204ENST00000448905 KAZALD1Q96I82 304 aa16.68■□□□□ 0.26
HMGB3-204ENST00000448905 EFCC1Q9HA90 598 aa16.68■□□□□ 0.26
HMGB3-204ENST00000448905 PTPRCP08575 1304 aa16.68■□□□□ 0.26
HMGB3-204ENST00000448905 CRHR2Q13324 411 aa16.67■□□□□ 0.26
HMGB3-204ENST00000448905 ZFYVE28Q9HCC9 887 aa16.67■□□□□ 0.26
HMGB3-204ENST00000448905 SUGT1Q9Y2Z0 365 aa16.67■□□□□ 0.26
HMGB3-204ENST00000448905 E9PSI1 815 aa16.66■□□□□ 0.26
HMGB3-204ENST00000448905 LRRC24Q50LG9 513 aa16.66■□□□□ 0.26
HMGB3-204ENST00000448905 MRPL50Q8N5N7 158 aaKnown RBP16.66■□□□□ 0.26
HMGB3-204ENST00000448905 PTPN18Q99952 460 aa16.66■□□□□ 0.26
HMGB3-204ENST00000448905 TMEM39BQ9GZU3 492 aa16.66■□□□□ 0.26
HMGB3-204ENST00000448905 IQSEC3Q9UPP2 1182 aaPredicted RBP16.66■□□□□ 0.26
HMGB3-204ENST00000448905 PTPN22Q9Y2R2 807 aa16.66■□□□□ 0.26
HMGB3-204ENST00000448905 MAST3O60307 1309 aa16.66■□□□□ 0.26
HMGB3-204ENST00000448905 GJA5P36382 358 aa16.65■□□□□ 0.26
HMGB3-204ENST00000448905 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.65■□□□□ 0.26
HMGB3-204ENST00000448905 NBPF11Q86T75 865 aa16.65■□□□□ 0.26
HMGB3-204ENST00000448905 CD99L2Q8TCZ2 262 aa16.65■□□□□ 0.26
HMGB3-204ENST00000448905 ZDHHC15Q96MV8 337 aa16.65■□□□□ 0.26
HMGB3-204ENST00000448905 TEPSINQ96N21 525 aa16.65■□□□□ 0.26
HMGB3-204ENST00000448905 HDAC5Q9UQL6 1122 aa16.65■□□□□ 0.26
HMGB3-204ENST00000448905 AOX1Q06278 1338 aa16.65■□□□□ 0.26
HMGB3-204ENST00000448905 CCL15-CCL14A0A0B4J2E2 113 aa16.64■□□□□ 0.25
HMGB3-204ENST00000448905 BCAMP50895 628 aa16.64■□□□□ 0.25
HMGB3-204ENST00000448905 PUM3Q15397 648 aaKnown RBP16.64■□□□□ 0.25
HMGB3-204ENST00000448905 CCL15Q16663 113 aa16.64■□□□□ 0.25
HMGB3-204ENST00000448905 FKBP1CQ5VVH2 108 aa16.64■□□□□ 0.25
HMGB3-204ENST00000448905 FAM83AQ86UY5 434 aa16.64■□□□□ 0.25
HMGB3-204ENST00000448905 GCC1Q96CN9 775 aa16.64■□□□□ 0.25
HMGB3-204ENST00000448905 MS4A4AQ96JQ5 239 aa16.64■□□□□ 0.25
HMGB3-204ENST00000448905 CETPP11597 493 aa16.63■□□□□ 0.25
HMGB3-204ENST00000448905 VGLL4Q14135 290 aa16.63■□□□□ 0.25
HMGB3-204ENST00000448905 TAF1CQ15572 869 aaPredicted RBP16.63■□□□□ 0.25
HMGB3-204ENST00000448905 DCAF15Q66K64 600 aa16.63■□□□□ 0.25
HMGB3-204ENST00000448905 ANKRD44Q8N8A2 993 aa16.63■□□□□ 0.25
HMGB3-204ENST00000448905 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.63■□□□□ 0.25
HMGB3-204ENST00000448905 WDR66Q8TBY9 1149 aa16.63■□□□□ 0.25
HMGB3-204ENST00000448905 OTUD5Q96G74 571 aa16.63■□□□□ 0.25
HMGB3-204ENST00000448905 TMEM106CQ9BVX2 250 aa16.63■□□□□ 0.25
HMGB3-204ENST00000448905 USP44Q9H0E7 712 aa16.63■□□□□ 0.25
HMGB3-204ENST00000448905 PDE4DIPQ5VU43 2346 aa16.62■□□□□ 0.25
HMGB3-204ENST00000448905 SLC5A1P13866 664 aa16.62■□□□□ 0.25
HMGB3-204ENST00000448905 KIF22Q14807 665 aa16.62■□□□□ 0.25
HMGB3-204ENST00000448905 HHIPL2Q6UWX4 724 aa16.62■□□□□ 0.25
HMGB3-204ENST00000448905 ERO1BQ86YB8 467 aa16.62■□□□□ 0.25
HMGB3-204ENST00000448905 LPIN2Q92539 896 aa16.62■□□□□ 0.25
HMGB3-204ENST00000448905 GNL3LQ9NVN8 582 aaKnown RBP16.62■□□□□ 0.25
HMGB3-204ENST00000448905 KIF16BQ96L93 1317 aa16.62■□□□□ 0.25
HMGB3-204ENST00000448905 SSC5DA1L4H1 1573 aa16.61■□□□□ 0.25
HMGB3-204ENST00000448905 EYA2O00167 538 aa16.61■□□□□ 0.25
HMGB3-204ENST00000448905 SNAPC2Q13487 334 aa16.61■□□□□ 0.25
HMGB3-204ENST00000448905 ALDH1L2Q3SY69 923 aa16.61■□□□□ 0.25
HMGB3-204ENST00000448905 VGLL2Q8N8G2 317 aa16.61■□□□□ 0.25
HMGB3-204ENST00000448905 KLHDC4Q8TBB5 520 aa16.61■□□□□ 0.25
HMGB3-204ENST00000448905 BRI3BPQ8WY22 251 aa16.61■□□□□ 0.25
HMGB3-204ENST00000448905 SSH1Q8WYL5 1049 aa16.61■□□□□ 0.25
HMGB3-204ENST00000448905 SPDYE5A6NIY4 337 aa16.6■□□□□ 0.25
HMGB3-204ENST00000448905 CACNB3P54284 484 aa16.6■□□□□ 0.25
HMGB3-204ENST00000448905 GRIK5Q16478 980 aa16.6■□□□□ 0.25
HMGB3-204ENST00000448905 APOBEC3HQ6NTF7 200 aaKnown RBP16.6■□□□□ 0.25
HMGB3-204ENST00000448905 ARMC5Q96C12 935 aa16.6■□□□□ 0.25
HMGB3-204ENST00000448905 WRNIP1Q96S55 665 aa16.6■□□□□ 0.25
HMGB3-204ENST00000448905 ZCCHC17Q9NP64 241 aaKnown RBP16.6■□□□□ 0.25
HMGB3-204ENST00000448905 FBXO3Q9UK99 471 aa16.6■□□□□ 0.25
HMGB3-204ENST00000448905 ZNF521Q96K83 1311 aa16.6■□□□□ 0.25
HMGB3-204ENST00000448905 FGFR2P21802 821 aa16.59■□□□□ 0.25
HMGB3-204ENST00000448905 CDAN1Q8IWY9 1227 aa16.59■□□□□ 0.25
HMGB3-204ENST00000448905 CNKSR2Q8WXI2 1034 aa16.59■□□□□ 0.25
HMGB3-204ENST00000448905 ZKSCAN4Q969J2 545 aaPredicted RBP16.59■□□□□ 0.25
HMGB3-204ENST00000448905 ZNF341Q9BYN7 854 aa16.59■□□□□ 0.25
HMGB3-204ENST00000448905 CEP126Q9P2H0 1117 aa16.59■□□□□ 0.25
HMGB3-204ENST00000448905 TLR2O60603 784 aa16.58■□□□□ 0.24
HMGB3-204ENST00000448905 GNRH1P01148 92 aa16.58■□□□□ 0.24
HMGB3-204ENST00000448905 UBTFL1P0CB47 393 aaPredicted RBP16.58■□□□□ 0.24
HMGB3-204ENST00000448905 PPATQ06203 517 aa16.58■□□□□ 0.24
HMGB3-204ENST00000448905 SLFN5Q08AF3 891 aa16.58■□□□□ 0.24
HMGB3-204ENST00000448905 SLC9C1Q4G0N8 1177 aa16.58■□□□□ 0.24
HMGB3-204ENST00000448905 FAM151AQ8WW52 585 aa16.58■□□□□ 0.24
HMGB3-204ENST00000448905 POTEFA5A3E0 1075 aa16.57■□□□□ 0.24
HMGB3-204ENST00000448905 PPIL2Q13356 520 aa16.57■□□□□ 0.24
HMGB3-204ENST00000448905 FAM43AQ8N2R8 423 aa16.57■□□□□ 0.24
HMGB3-204ENST00000448905 SMC4Q9NTJ3 1288 aa16.57■□□□□ 0.24
HMGB3-204ENST00000448905 IRF6O14896 467 aa16.56■□□□□ 0.24
HMGB3-204ENST00000448905 LDHBP07195 334 aaKnown RBP16.56■□□□□ 0.24
HMGB3-204ENST00000448905 PRMT2P55345 433 aa16.56■□□□□ 0.24
HMGB3-204ENST00000448905 SLC4A8Q2Y0W8 1093 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms