RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 KCNK9Q9NPC2 374 aa8.76□□□□□ -1.01
NEDD9-204ENST00000448183 IQSEC3Q9UPP2 1182 aaPredicted RBP8.76□□□□□ -1.01
NEDD9-204ENST00000448183 GNA11P29992 359 aa8.76□□□□□ -1.01
NEDD9-204ENST00000448183 AKAP4Q5JQC9 854 aa8.76□□□□□ -1.01
NEDD9-204ENST00000448183 CD109Q6YHK3 1445 aa8.76□□□□□ -1.01
NEDD9-204ENST00000448183 CCDC25Q86WR0 208 aa8.76□□□□□ -1.01
NEDD9-204ENST00000448183 JAKMIP2Q96AA8 810 aa8.76□□□□□ -1.01
NEDD9-204ENST00000448183 POLKQ9UBT6 870 aa8.76□□□□□ -1.01
NEDD9-204ENST00000448183 TMEM110-MUSTN1A8MSY1 372 aa8.76□□□□□ -1.01
NEDD9-204ENST00000448183 ZBTB7BO15156 539 aaPredicted RBP8.76□□□□□ -1.01
NEDD9-204ENST00000448183 CPA1P15085 419 aa8.76□□□□□ -1.01
NEDD9-204ENST00000448183 MCM7P33993 719 aa8.76□□□□□ -1.01
NEDD9-204ENST00000448183 GJC1P36383 396 aa8.76□□□□□ -1.01
NEDD9-204ENST00000448183 EIF4A2Q14240 407 aaKnown RBP8.76□□□□□ -1.01
NEDD9-204ENST00000448183 CCDC63Q8NA47 563 aa8.76□□□□□ -1.01
NEDD9-204ENST00000448183 ITSN2Q9NZM3 1697 aa8.76□□□□□ -1.01
NEDD9-204ENST00000448183 FANCCQ00597 558 aa8.75□□□□□ -1.01
NEDD9-204ENST00000448183 TBC1D8BQ0IIM8 1120 aa8.75□□□□□ -1.01
NEDD9-204ENST00000448183 ELF2Q15723 593 aa8.75□□□□□ -1.01
NEDD9-204ENST00000448183 UBLCP1Q8WVY7 318 aaPredicted RBP8.75□□□□□ -1.01
NEDD9-204ENST00000448183 NKIRAS1Q9NYS0 192 aa8.75□□□□□ -1.01
NEDD9-204ENST00000448183 IMPACTQ9P2X3 320 aa8.75□□□□□ -1.01
NEDD9-204ENST00000448183 RAPGEF6Q8TEU7 1601 aa8.75□□□□□ -1.01
NEDD9-204ENST00000448183 MAGEB6P1A0A0J9YX57 407 aa8.75□□□□□ -1.01
NEDD9-204ENST00000448183 RPS6KB1P23443 525 aa8.75□□□□□ -1.01
NEDD9-204ENST00000448183 ALDH3A1P30838 453 aa8.75□□□□□ -1.01
NEDD9-204ENST00000448183 CCT6AP40227 531 aaKnown RBP8.75□□□□□ -1.01
NEDD9-204ENST00000448183 PPP1R7Q15435 360 aa8.75□□□□□ -1.01
NEDD9-204ENST00000448183 C8orf74Q6P047 294 aa8.75□□□□□ -1.01
NEDD9-204ENST00000448183 CCDC50Q8IVM0 306 aa8.75□□□□□ -1.01
NEDD9-204ENST00000448183 LRRC45Q96CN5 670 aa8.75□□□□□ -1.01
NEDD9-204ENST00000448183 IFT74Q96LB3 600 aa8.75□□□□□ -1.01
NEDD9-204ENST00000448183 LLPHQ9BRT6 129 aaKnown RBP8.75□□□□□ -1.01
NEDD9-204ENST00000448183 CBX8Q9HC52 389 aa8.75□□□□□ -1.01
NEDD9-204ENST00000448183 PABPN1LA6NDY0 278 aaKnown RBP8.75□□□□□ -1.01
NEDD9-204ENST00000448183 ATP2A2P16615 1042 aaKnown RBP8.75□□□□□ -1.01
NEDD9-204ENST00000448183 NAA25Q14CX7 972 aa8.75□□□□□ -1.01
NEDD9-204ENST00000448183 INTS8Q75QN2 995 aaKnown RBP8.75□□□□□ -1.01
NEDD9-204ENST00000448183 POTEDQ86YR6 584 aa8.75□□□□□ -1.01
NEDD9-204ENST00000448183 RRP36Q96EU6 259 aaKnown RBP8.75□□□□□ -1.01
NEDD9-204ENST00000448183 ARHGAP6O43182 974 aa8.75□□□□□ -1.01
NEDD9-204ENST00000448183 FAM13AO94988 1023 aa8.75□□□□□ -1.01
NEDD9-204ENST00000448183 RPL13P26373 211 aaKnown RBP8.75□□□□□ -1.01
NEDD9-204ENST00000448183 TNNI2P48788 182 aa8.75□□□□□ -1.01
NEDD9-204ENST00000448183 SLC39A6Q13433 755 aa8.75□□□□□ -1.01
NEDD9-204ENST00000448183 ANO1Q5XXA6 986 aa8.75□□□□□ -1.01
NEDD9-204ENST00000448183 SMARCC2Q8TAQ2 1214 aa8.75□□□□□ -1.01
NEDD9-204ENST00000448183 PUS7Q96PZ0 661 aaKnown RBP8.75□□□□□ -1.01
NEDD9-204ENST00000448183 NAP1L3Q99457 506 aaPredicted RBP8.75□□□□□ -1.01
NEDD9-204ENST00000448183 INPP5BP32019 993 aa8.74□□□□□ -1.01
NEDD9-204ENST00000448183 MTHFSDQ2M296 383 aaKnown RBP8.74□□□□□ -1.01
NEDD9-204ENST00000448183 CYP26C1Q6V0L0 522 aa8.74□□□□□ -1.01
NEDD9-204ENST00000448183 CFAP57Q96MR6 1250 aa8.74□□□□□ -1.01
NEDD9-204ENST00000448183 KCNH3Q9ULD8 1083 aa8.74□□□□□ -1.01
NEDD9-204ENST00000448183 MAPKBP1O60336 1514 aa8.74□□□□□ -1.01
NEDD9-204ENST00000448183 VWA3AA6NCI4 1184 aa8.74□□□□□ -1.01
NEDD9-204ENST00000448183 GOLGA6CA6NDK9 693 aa8.74□□□□□ -1.01
NEDD9-204ENST00000448183 DCAF8L1A6NGE4 600 aa8.74□□□□□ -1.01
NEDD9-204ENST00000448183 VIMP08670 466 aaKnown RBP8.74□□□□□ -1.01
NEDD9-204ENST00000448183 GOLGA6DP0CG33 693 aa8.74□□□□□ -1.01
NEDD9-204ENST00000448183 ATP5DP30049 168 aa8.74□□□□□ -1.01
NEDD9-204ENST00000448183 NOC4LQ9BVI4 516 aaKnown RBP8.74□□□□□ -1.01
NEDD9-204ENST00000448183 HELLSQ9NRZ9 838 aa8.74□□□□□ -1.01
NEDD9-204ENST00000448183 GOLGA6AQ9NYA3 693 aa8.74□□□□□ -1.01
NEDD9-204ENST00000448183 ANAPC4Q9UJX5 808 aa8.74□□□□□ -1.01
NEDD9-204ENST00000448183 GIGYF1O75420 1035 aaPredicted RBP8.74□□□□□ -1.01
NEDD9-204ENST00000448183 RXRAP19793 462 aa8.74□□□□□ -1.01
NEDD9-204ENST00000448183 HPDP32754 393 aaPredicted RBP8.74□□□□□ -1.01
NEDD9-204ENST00000448183 TFCP2Q12800 502 aa8.74□□□□□ -1.01
NEDD9-204ENST00000448183 CWF19L2Q2TBE0 894 aaKnown RBP8.74□□□□□ -1.01
NEDD9-204ENST00000448183 VWA3BQ502W6 1294 aa8.74□□□□□ -1.01
NEDD9-204ENST00000448183 NBPF6Q5VWK0 638 aa8.74□□□□□ -1.01
NEDD9-204ENST00000448183 NBPF5PQ86XG9 351 aaPredicted RBP8.74□□□□□ -1.01
NEDD9-204ENST00000448183 MLKLQ8NB16 471 aa8.74□□□□□ -1.01
NEDD9-204ENST00000448183 RAB3IL1Q8TBN0 382 aa8.74□□□□□ -1.01
NEDD9-204ENST00000448183 CCDC110Q8TBZ0 833 aa8.74□□□□□ -1.01
NEDD9-204ENST00000448183 KIAA1524Q8TCG1 905 aa8.74□□□□□ -1.01
NEDD9-204ENST00000448183 NBPF4Q96M43 638 aa8.74□□□□□ -1.01
NEDD9-204ENST00000448183 SEC62Q99442 399 aaKnown RBP8.74□□□□□ -1.01
NEDD9-204ENST00000448183 VPS16Q9H269 839 aa8.74□□□□□ -1.01
NEDD9-204ENST00000448183 SSX2IPQ9Y2D8 614 aa8.74□□□□□ -1.01
NEDD9-204ENST00000448183 ZNF608Q9ULD9 1512 aaPredicted RBP8.74□□□□□ -1.01
NEDD9-204ENST00000448183 SPDYE3A6NKU9 549 aa8.73□□□□□ -1.01
NEDD9-204ENST00000448183 PLCD1P51178 756 aa8.73□□□□□ -1.01
NEDD9-204ENST00000448183 KRT24Q2M2I5 525 aa8.73□□□□□ -1.01
NEDD9-204ENST00000448183 SEL1L2Q5TEA6 688 aa8.73□□□□□ -1.01
NEDD9-204ENST00000448183 C17orf53Q8N3J3 647 aaPredicted RBP8.73□□□□□ -1.01
NEDD9-204ENST00000448183 PSMD1Q99460 953 aa8.73□□□□□ -1.01
NEDD9-204ENST00000448183 TRIM7Q9C029 511 aa8.73□□□□□ -1.01
NEDD9-204ENST00000448183 ZRANB1Q9UGI0 708 aa8.73□□□□□ -1.01
NEDD9-204ENST00000448183 PRAG1Q86YV5 1406 aa8.73□□□□□ -1.01
NEDD9-204ENST00000448183 RAPGEF1Q13905 1077 aa8.73□□□□□ -1.01
NEDD9-204ENST00000448183 MAP7D1Q3KQU3 841 aa8.73□□□□□ -1.01
NEDD9-204ENST00000448183 TCHPQ9BT92 498 aa8.73□□□□□ -1.01
NEDD9-204ENST00000448183 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.73□□□□□ -1.011e-6■■■□□ 15.8
NEDD9-204ENST00000448183 RBM28Q9NW13 759 aaKnown RBP8.73□□□□□ -1.01
NEDD9-204ENST00000448183 TXNDC16Q9P2K2 825 aa8.73□□□□□ -1.01
NEDD9-204ENST00000448183 TRAF5O00463 557 aa8.73□□□□□ -1.01
NEDD9-204ENST00000448183 ACTN4O43707 911 aaKnown RBP8.73□□□□□ -1.01
NEDD9-204ENST00000448183 FAM173BQ6P4H8 233 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms