RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 CNKSR1Q969H4 720 aa8.53□□□□□ -1.04
SYNE1-213ENST00000448038 RRP36Q96EU6 259 aaKnown RBP8.53□□□□□ -1.04
SYNE1-213ENST00000448038 RPS6KA4O75676 772 aa8.53□□□□□ -1.04
SYNE1-213ENST00000448038 F13A1P00488 732 aa8.53□□□□□ -1.04
SYNE1-213ENST00000448038 UBE4AQ14139 1066 aa8.53□□□□□ -1.04
SYNE1-213ENST00000448038 INTS4Q96HW7 963 aaKnown RBP8.53□□□□□ -1.04
SYNE1-213ENST00000448038 DBNLQ9UJU6 430 aaKnown RBP8.53□□□□□ -1.04
SYNE1-213ENST00000448038 BCS1LQ9Y276 419 aa8.53□□□□□ -1.04
SYNE1-213ENST00000448038 ADORA1P30542 326 aa8.53□□□□□ -1.04
SYNE1-213ENST00000448038 HSPA1LP34931 641 aa8.53□□□□□ -1.04
SYNE1-213ENST00000448038 PHKA1P46020 1223 aa8.53□□□□□ -1.04
SYNE1-213ENST00000448038 HLFQ16534 295 aa8.53□□□□□ -1.04
SYNE1-213ENST00000448038 ZNF804BA4D1E1 1349 aa8.52□□□□□ -1.04
SYNE1-213ENST00000448038 FAM43AQ8N2R8 423 aa8.52□□□□□ -1.04
SYNE1-213ENST00000448038 CNPY2Q9Y2B0 182 aa8.52□□□□□ -1.04
SYNE1-213ENST00000448038 MATR3P43243 847 aaKnown RBP eCLIP8.52□□□□□ -1.05
SYNE1-213ENST00000448038 CHMP4BP1P59074 171 aa8.52□□□□□ -1.05
SYNE1-213ENST00000448038 RBM6P78332 1123 aaKnown RBP8.52□□□□□ -1.05
SYNE1-213ENST00000448038 CTDSPL2Q05D32 466 aa8.52□□□□□ -1.05
SYNE1-213ENST00000448038 RAB3GAP1Q15042 981 aa8.52□□□□□ -1.05
SYNE1-213ENST00000448038 SYCP1Q15431 976 aa8.52□□□□□ -1.05
SYNE1-213ENST00000448038 SUSD4Q5VX71 490 aa8.52□□□□□ -1.05
SYNE1-213ENST00000448038 MAPKAPK5Q8IW41 473 aa8.52□□□□□ -1.05
SYNE1-213ENST00000448038 GPR108Q9NPR9 543 aa8.52□□□□□ -1.05
SYNE1-213ENST00000448038 A0A0D9SFI3 127 aa8.52□□□□□ -1.05
SYNE1-213ENST00000448038 KCNQ2O43526 872 aa8.52□□□□□ -1.05
SYNE1-213ENST00000448038 CALML3P27482 149 aa8.52□□□□□ -1.05
SYNE1-213ENST00000448038 TGFBRAP1Q8WUH2 860 aa8.52□□□□□ -1.05
SYNE1-213ENST00000448038 DSCC1Q9BVC3 393 aa8.52□□□□□ -1.05
SYNE1-213ENST00000448038 C6orf50Q9HD87 102 aa8.52□□□□□ -1.05
SYNE1-213ENST00000448038 ANGEL1Q9UNK9 670 aaKnown RBP8.52□□□□□ -1.05
SYNE1-213ENST00000448038 TTF2Q9UNY4 1162 aaKnown RBP8.52□□□□□ -1.05
SYNE1-213ENST00000448038 BMP15O95972 392 aa8.52□□□□□ -1.05
SYNE1-213ENST00000448038 CLEC4GQ6UXB4 293 aa8.52□□□□□ -1.05
SYNE1-213ENST00000448038 RBM28Q9NW13 759 aaKnown RBP8.52□□□□□ -1.05
SYNE1-213ENST00000448038 TLR7Q9NYK1 1049 aaKnown RBP8.52□□□□□ -1.05
SYNE1-213ENST00000448038 PARP1P09874 1014 aaKnown RBP8.52□□□□□ -1.05
SYNE1-213ENST00000448038 PDE6AP16499 860 aa8.52□□□□□ -1.05
SYNE1-213ENST00000448038 DNM1Q05193 864 aaKnown RBP8.52□□□□□ -1.05
SYNE1-213ENST00000448038 DOK7Q18PE1 504 aa8.52□□□□□ -1.05
SYNE1-213ENST00000448038 CFAP100Q494V2 611 aa8.52□□□□□ -1.05
SYNE1-213ENST00000448038 TRMT1LQ7Z2T5 733 aaKnown RBP8.52□□□□□ -1.05
SYNE1-213ENST00000448038 KCNG4Q8TDN1 519 aa8.52□□□□□ -1.05
SYNE1-213ENST00000448038 SOS2Q07890 1332 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-213ENST00000448038 SPATA31A6Q5VVP1 1343 aa8.51□□□□□ -1.05
SYNE1-213ENST00000448038 PATL2C9JE40 543 aaKnown RBP8.51□□□□□ -1.05
SYNE1-213ENST00000448038 HSPA4P34932 840 aa8.51□□□□□ -1.05
SYNE1-213ENST00000448038 PTPN12Q05209 780 aaKnown RBP8.51□□□□□ -1.05
SYNE1-213ENST00000448038 TCP10Q12799 353 aa8.51□□□□□ -1.05
SYNE1-213ENST00000448038 ODF2Q5BJF6 829 aa8.51□□□□□ -1.05
SYNE1-213ENST00000448038 FILIP1Q7Z7B0 1213 aa8.51□□□□□ -1.05
SYNE1-213ENST00000448038 SEC62Q99442 399 aaKnown RBP8.51□□□□□ -1.05
SYNE1-213ENST00000448038 UBA5Q9GZZ9 404 aa8.51□□□□□ -1.05
SYNE1-213ENST00000448038 STAP2Q9UGK3 403 aa8.51□□□□□ -1.05
SYNE1-213ENST00000448038 XDHP47989 1333 aa8.51□□□□□ -1.05
SYNE1-213ENST00000448038 KDM4FA0A1W2PPD8 638 aa8.51□□□□□ -1.05
SYNE1-213ENST00000448038 H7C1W4 665 aa8.51□□□□□ -1.05
SYNE1-213ENST00000448038 IGKV5-2P06315 115 aa8.51□□□□□ -1.05
SYNE1-213ENST00000448038 CYP19A1P11511 503 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-213ENST00000448038 NRKQ7Z2Y5 1582 aa8.51□□□□□ -1.05
SYNE1-213ENST00000448038 NEURL4Q96JN8 1562 aa8.51□□□□□ -1.05
SYNE1-213ENST00000448038 BIN1O00499 593 aa8.51□□□□□ -1.05
SYNE1-213ENST00000448038 SIRT2Q8IXJ6 389 aa8.51□□□□□ -1.05
SYNE1-213ENST00000448038 SMARCC2Q8TAQ2 1214 aa8.51□□□□□ -1.05
SYNE1-213ENST00000448038 CNKSR2Q8WXI2 1034 aa8.51□□□□□ -1.05
SYNE1-213ENST00000448038 SAMM50Q9Y512 469 aa8.51□□□□□ -1.05
SYNE1-213ENST00000448038 PPEF1O14829 653 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-213ENST00000448038 IDEP14735 1019 aa8.51□□□□□ -1.05
SYNE1-213ENST00000448038 AMPD3Q01432 767 aa8.51□□□□□ -1.05
SYNE1-213ENST00000448038 VPS72Q15906 364 aa8.51□□□□□ -1.05
SYNE1-213ENST00000448038 ZFYVE27Q5T4F4 411 aa8.51□□□□□ -1.05
SYNE1-213ENST00000448038 PYM1Q9BRP8 204 aaKnown RBP8.51□□□□□ -1.05
SYNE1-213ENST00000448038 MROH1Q8NDA8 1641 aa8.51□□□□□ -1.05
SYNE1-213ENST00000448038 MARCKSP29966 332 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-213ENST00000448038 DLGAP5Q15398 846 aa8.5□□□□□ -1.05
SYNE1-213ENST00000448038 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-213ENST00000448038 GOLGA6L1Q8N7Z2 621 aa8.5□□□□□ -1.05
SYNE1-213ENST00000448038 TEKT1Q969V4 418 aa8.5□□□□□ -1.05
SYNE1-213ENST00000448038 LEMD3Q9Y2U8 911 aa8.5□□□□□ -1.05
SYNE1-213ENST00000448038 TRIM75PA6NK02 468 aa8.5□□□□□ -1.05
SYNE1-213ENST00000448038 KRT2P35908 639 aa8.5□□□□□ -1.05
SYNE1-213ENST00000448038 SYKP43405 635 aa8.5□□□□□ -1.05
SYNE1-213ENST00000448038 USP48Q86UV5 1035 aa8.5□□□□□ -1.05
SYNE1-213ENST00000448038 MNS1Q8NEH6 495 aa8.5□□□□□ -1.05
SYNE1-213ENST00000448038 PDCL3Q9H2J4 239 aa8.5□□□□□ -1.05
SYNE1-213ENST00000448038 DEF6Q9H4E7 631 aa8.5□□□□□ -1.05
SYNE1-213ENST00000448038 EPB41L2O43491 1005 aaKnown RBP8.5□□□□□ -1.05
SYNE1-213ENST00000448038 EIF5P55010 431 aaKnown RBP8.5□□□□□ -1.05
SYNE1-213ENST00000448038 PPP4R3AQ6IN85 833 aa8.5□□□□□ -1.05
SYNE1-213ENST00000448038 TTLL11Q8NHH1 800 aa8.5□□□□□ -1.05
SYNE1-213ENST00000448038 TSG101Q99816 390 aa8.5□□□□□ -1.05
SYNE1-213ENST00000448038 BBOX1O75936 387 aa8.5□□□□□ -1.05
SYNE1-213ENST00000448038 PTH1RQ03431 593 aa8.5□□□□□ -1.05
SYNE1-213ENST00000448038 KLHL40Q2TBA0 621 aa8.5□□□□□ -1.05
SYNE1-213ENST00000448038 KANK3Q6NY19 840 aa8.5□□□□□ -1.05
SYNE1-213ENST00000448038 USP40Q9NVE5 1235 aa8.5□□□□□ -1.05
SYNE1-213ENST00000448038 NCOA3Q9Y6Q9 1424 aa8.5□□□□□ -1.05
SYNE1-213ENST00000448038 E7EWF7 191 aa8.5□□□□□ -1.05
SYNE1-213ENST00000448038 CCP110O43303 1012 aa8.5□□□□□ -1.05
SYNE1-213ENST00000448038 PPP1R12BO60237 982 aaPredicted RBP8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms