RNA–Protein interactions for RNA: ENST00000444268.1

COL28A1-204, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 1,755 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-204ENST00000444268 CLCN1P35523 988 aa15.08■□□□□ 0.01
COL28A1-204ENST00000444268 NLGN1Q8N2Q7 840 aa15.08■□□□□ 0.01
COL28A1-204ENST00000444268 CNBD1Q8NA66 436 aa15.08■□□□□ 0.01
COL28A1-204ENST00000444268 H3BQV1 296 aa15.08■□□□□ 0
COL28A1-204ENST00000444268 SLC5A1P13866 664 aa15.08■□□□□ 0
COL28A1-204ENST00000444268 UBE3CQ15386 1083 aa15.08■□□□□ 0
COL28A1-204ENST00000444268 UVSSAQ2YD98 709 aa15.08■□□□□ 0
COL28A1-204ENST00000444268 SLC10A5Q5PT55 438 aa15.08■□□□□ 0
COL28A1-204ENST00000444268 IFFO2Q5TF58 517 aa15.08■□□□□ 0
COL28A1-204ENST00000444268 NAA16Q6N069 864 aaPredicted RBP15.08■□□□□ 0
COL28A1-204ENST00000444268 PDLIM2Q96JY6 352 aa15.08■□□□□ 0
COL28A1-204ENST00000444268 TAF1P21675 1872 aa15.07■□□□□ 0
COL28A1-204ENST00000444268 DHX16O60231 1041 aaKnown RBP15.07■□□□□ 0
COL28A1-204ENST00000444268 ADD2P35612 726 aa15.07■□□□□ 0
COL28A1-204ENST00000444268 MCAMP43121 646 aa15.07■□□□□ 0
COL28A1-204ENST00000444268 EVCP57679 992 aa15.07■□□□□ 0
COL28A1-204ENST00000444268 COL9A3Q14050 684 aaPredicted RBP15.07■□□□□ 0
COL28A1-204ENST00000444268 SCARF1Q14162 830 aa15.07■□□□□ 0
COL28A1-204ENST00000444268 CCDC152Q4G0S7 254 aa15.07■□□□□ 0
COL28A1-204ENST00000444268 MPHOSPH8Q99549 860 aa15.07■□□□□ 0
COL28A1-204ENST00000444268 CFAP45Q9UL16 551 aa15.07■□□□□ 0
COL28A1-204ENST00000444268 GPAA1O43292 621 aa15.06■□□□□ 0
COL28A1-204ENST00000444268 MCM5P33992 734 aa15.06■□□□□ 0
COL28A1-204ENST00000444268 SCRN1Q12765 414 aa15.06■□□□□ 0
COL28A1-204ENST00000444268 ATL3Q6DD88 541 aa15.06■□□□□ 0
COL28A1-204ENST00000444268 RALYLQ86SE5 291 aaKnown RBP15.06■□□□□ 0
COL28A1-204ENST00000444268 DOCK2Q92608 1830 aa15.06■□□□□ 0
COL28A1-204ENST00000444268 GOLGA6L4A6NEF3 574 aa15.06■□□□□ 0
COL28A1-204ENST00000444268 ZNF213O14771 459 aa15.06■□□□□ 0
COL28A1-204ENST00000444268 FGFR2P21802 821 aa15.06■□□□□ 0
COL28A1-204ENST00000444268 CCDC102BQ68D86 513 aa15.06■□□□□ 0
COL28A1-204ENST00000444268 NCOA7Q8NI08 942 aa15.06■□□□□ 0
COL28A1-204ENST00000444268 RRAGDQ9NQL2 400 aaPredicted RBP15.06■□□□□ 0
COL28A1-204ENST00000444268 MYH15Q9Y2K3 1946 aa15.05■□□□□ 0
COL28A1-204ENST00000444268 IGHMBP2P38935 993 aaKnown RBP15.05■□□□□ -0
COL28A1-204ENST00000444268 TRDNQ13061 729 aa15.05■□□□□ -0
COL28A1-204ENST00000444268 R3HDM1Q15032 1099 aaKnown RBP15.05■□□□□ -0
COL28A1-204ENST00000444268 SF3B3Q15393 1217 aaKnown RBP15.05■□□□□ -0
COL28A1-204ENST00000444268 SLC9C2Q5TAH2 1124 aa15.05■□□□□ -0
COL28A1-204ENST00000444268 RGS22Q8NE09 1264 aa15.05■□□□□ -0
COL28A1-204ENST00000444268 NSUN7Q8NE18 718 aaKnown RBP15.05■□□□□ -0
COL28A1-204ENST00000444268 SPATA32Q96LK8 384 aa15.05■□□□□ -0
COL28A1-204ENST00000444268 ZMYM6O95789 1325 aa15.05■□□□□ -0
COL28A1-204ENST00000444268 NRXN2Q9P2S2 1712 aa15.05■□□□□ -0
COL28A1-204ENST00000444268 JAK2O60674 1132 aa15.04■□□□□ -0
COL28A1-204ENST00000444268 FGAP02671 866 aa15.04■□□□□ -0
COL28A1-204ENST00000444268 SLFNL1Q499Z3 407 aa15.04■□□□□ -0
COL28A1-204ENST00000444268 SLC51AQ86UW1 340 aa15.04■□□□□ -0
COL28A1-204ENST00000444268 FERMT3Q86UX7 667 aa15.04■□□□□ -0
COL28A1-204ENST00000444268 NLRP3Q96P20 1036 aa15.04■□□□□ -0
COL28A1-204ENST00000444268 ANKRD31Q8N7Z5 1873 aa15.03■□□□□ -0
COL28A1-204ENST00000444268 PTPDC1A2A3K4 754 aa15.03■□□□□ -0
COL28A1-204ENST00000444268 ST5P78524 1137 aa15.03■□□□□ -0
COL28A1-204ENST00000444268 APOBRQ0VD83 1088 aa15.03■□□□□ -0
COL28A1-204ENST00000444268 MAP3K12Q12852 859 aa15.03■□□□□ -0
COL28A1-204ENST00000444268 RESTQ13127 1097 aa15.03■□□□□ -0
COL28A1-204ENST00000444268 TTC6Q86TZ1 520 aa15.03■□□□□ -0
COL28A1-204ENST00000444268 ZSCAN30Q86W11 494 aa15.03■□□□□ -0
COL28A1-204ENST00000444268 PUS7LQ9H0K6 701 aaKnown RBP15.03■□□□□ -0
COL28A1-204ENST00000444268 PARP3Q9Y6F1 533 aa15.03■□□□□ -0
COL28A1-204ENST00000444268 PSDA5PKW4 1024 aaPredicted RBP15.03■□□□□ -0
COL28A1-204ENST00000444268 FOXP2O15409 715 aa15.03■□□□□ -0
COL28A1-204ENST00000444268 IDH1O75874 414 aaKnown RBP15.03■□□□□ -0
COL28A1-204ENST00000444268 PDIA3P30101 505 aaKnown RBP15.03■□□□□ -0
COL28A1-204ENST00000444268 CELF1Q92879 486 aaKnown RBP15.03■□□□□ -0
COL28A1-204ENST00000444268 CDC5LQ99459 802 aaKnown RBP15.03■□□□□ -0
COL28A1-204ENST00000444268 LRRC2Q9BYS8 371 aa15.03■□□□□ -0
COL28A1-204ENST00000444268 DDX19AQ9NUU7 478 aaKnown RBP15.03■□□□□ -0
COL28A1-204ENST00000444268 ZBTB7AO95365 584 aa15.02□□□□□ -0.01
COL28A1-204ENST00000444268 PHKA1P46020 1223 aa15.02□□□□□ -0.01
COL28A1-204ENST00000444268 TTLL5Q6EMB2 1281 aa15.02□□□□□ -0.01
COL28A1-204ENST00000444268 PI16Q6UXB8 463 aa15.02□□□□□ -0.01
COL28A1-204ENST00000444268 MB21D2Q8IYB1 491 aaPredicted RBP15.02□□□□□ -0.01
COL28A1-204ENST00000444268 SPATA5Q8NB90 893 aa15.02□□□□□ -0.01
COL28A1-204ENST00000444268 LEO1Q8WVC0 666 aaPredicted RBP15.02□□□□□ -0.01
COL28A1-204ENST00000444268 SALL1Q9NSC2 1324 aa15.02□□□□□ -0.01
COL28A1-204ENST00000444268 PRC1O43663 620 aa15.01□□□□□ -0.01
COL28A1-204ENST00000444268 PDE6AP16499 860 aa15.01□□□□□ -0.01
COL28A1-204ENST00000444268 MSNP26038 577 aaKnown RBP15.01□□□□□ -0.01
COL28A1-204ENST00000444268 ALX1Q15699 326 aa15.01□□□□□ -0.01
COL28A1-204ENST00000444268 DDX11Q96FC9 970 aa15.01□□□□□ -0.01
COL28A1-204ENST00000444268 ZNF396Q96N95 335 aaPredicted RBP15.01□□□□□ -0.01
COL28A1-204ENST00000444268 CCDC39Q9UFE4 941 aa15.01□□□□□ -0.01
COL28A1-204ENST00000444268 ZNF532Q9HCE3 1301 aa15.01□□□□□ -0.01
COL28A1-204ENST00000444268 CCDC192P0DO97 292 aa15.01□□□□□ -0.01
COL28A1-204ENST00000444268 RNF214Q8ND24 703 aa15.01□□□□□ -0.01
COL28A1-204ENST00000444268 HELBQ8NG08 1087 aaPredicted RBP15.01□□□□□ -0.01
COL28A1-204ENST00000444268 AIDAQ96BJ3 306 aa15.01□□□□□ -0.01
COL28A1-204ENST00000444268 NUP62CLQ9H1M0 184 aa15.01□□□□□ -0.01
COL28A1-204ENST00000444268 PIH1D3Q9NQM4 214 aaKnown RBP15.01□□□□□ -0.01
COL28A1-204ENST00000444268 GNAT2P19087 354 aa15□□□□□ -0.01
COL28A1-204ENST00000444268 NAP1L2Q9ULW6 460 aaPredicted RBP15□□□□□ -0.01
COL28A1-204ENST00000444268 ATF5Q9Y2D1 282 aaPredicted RBP15□□□□□ -0.01
COL28A1-204ENST00000444268 SNAP23O00161 211 aa14.99□□□□□ -0.01
COL28A1-204ENST00000444268 CTDNEP1O95476 244 aa14.99□□□□□ -0.01
COL28A1-204ENST00000444268 HAND2P61296 217 aa14.99□□□□□ -0.01
COL28A1-204ENST00000444268 MAP3K11Q16584 847 aa14.99□□□□□ -0.01
COL28A1-204ENST00000444268 TMEM87BQ96K49 555 aa14.99□□□□□ -0.01
COL28A1-204ENST00000444268 MYO5AQ9Y4I1 1855 aaKnown RBP14.99□□□□□ -0.01
COL28A1-204ENST00000444268 TCRBV5S4A2TA0A5A2 114 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms