RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 PLIN1O60240 522 aa9.75□□□□□ -0.85
CD44-211ENST00000442151 SASH1O94885 1247 aa9.75□□□□□ -0.85
CD44-211ENST00000442151 EGFRP00533 1210 aa9.75□□□□□ -0.85
CD44-211ENST00000442151 HIBADHP31937 336 aaKnown RBP9.75□□□□□ -0.85
CD44-211ENST00000442151 SREBF2Q12772 1141 aa9.75□□□□□ -0.85
CD44-211ENST00000442151 TNFAIP1Q13829 316 aa9.75□□□□□ -0.85
CD44-211ENST00000442151 KIAA0825Q8IV33 1275 aa9.75□□□□□ -0.85
CD44-211ENST00000442151 TBC1D22AQ8WUA7 517 aa9.75□□□□□ -0.85
CD44-211ENST00000442151 ABHD8Q96I13 439 aa9.75□□□□□ -0.85
CD44-211ENST00000442151 UTYO14607 1347 aa9.75□□□□□ -0.85
CD44-211ENST00000442151 COL1A1P02452 1464 aaPredicted RBP9.75□□□□□ -0.85
CD44-211ENST00000442151 THSD7BQ9C0I4 1608 aa9.75□□□□□ -0.85
CD44-211ENST00000442151 CCER2I3L3R5 266 aa9.75□□□□□ -0.85
CD44-211ENST00000442151 FRAT2O75474 233 aaPredicted RBP9.75□□□□□ -0.85
CD44-211ENST00000442151 TNNI2P48788 182 aa9.75□□□□□ -0.85
CD44-211ENST00000442151 NBPF9Q3BBW0 867 aa9.75□□□□□ -0.85
CD44-211ENST00000442151 MRPL50Q8N5N7 158 aaKnown RBP9.75□□□□□ -0.85
CD44-211ENST00000442151 PSME4Q14997 1843 aa9.74□□□□□ -0.85
CD44-211ENST00000442151 FAM155AB1AL88 458 aaPredicted RBP9.74□□□□□ -0.85
CD44-211ENST00000442151 TAF5LO75529 589 aa9.74□□□□□ -0.85
CD44-211ENST00000442151 ALDH1A1P00352 501 aa9.74□□□□□ -0.85
CD44-211ENST00000442151 RBM5P52756 815 aaKnown RBP eCLIP9.74□□□□□ -0.85
CD44-211ENST00000442151 SLFN5Q08AF3 891 aa9.74□□□□□ -0.85
CD44-211ENST00000442151 PKN2Q16513 984 aaKnown RBP9.74□□□□□ -0.85
CD44-211ENST00000442151 OTUD7BQ6GQQ9 843 aa9.74□□□□□ -0.85
CD44-211ENST00000442151 HOOK2Q96ED9 719 aa9.74□□□□□ -0.85
CD44-211ENST00000442151 SLC10A4Q96EP9 437 aa9.74□□□□□ -0.85
CD44-211ENST00000442151 FAM205AQ6ZU69 1335 aa9.73□□□□□ -0.85
CD44-211ENST00000442151 ZNF521Q96K83 1311 aa9.73□□□□□ -0.85
CD44-211ENST00000442151 POLR2AP24928 1970 aaKnown RBP9.73□□□□□ -0.85
CD44-211ENST00000442151 CCDC85CA6NKD9 419 aa9.73□□□□□ -0.85
CD44-211ENST00000442151 METTL24Q5JXM2 366 aa9.73□□□□□ -0.85
CD44-211ENST00000442151 TXNRD3Q86VQ6 643 aa9.73□□□□□ -0.85
CD44-211ENST00000442151 HELBQ8NG08 1087 aaPredicted RBP9.73□□□□□ -0.85
CD44-211ENST00000442151 API5Q9BZZ5 524 aaKnown RBP9.73□□□□□ -0.85
CD44-211ENST00000442151 RNF186Q9NXI6 227 aa9.73□□□□□ -0.85
CD44-211ENST00000442151 FBXO3Q9UK99 471 aa9.73□□□□□ -0.85
CD44-211ENST00000442151 SUGT1Q9Y2Z0 365 aa9.73□□□□□ -0.85
CD44-211ENST00000442151 MAST3O60307 1309 aa9.73□□□□□ -0.85
CD44-211ENST00000442151 PAPPA2Q9BXP8 1791 aa9.73□□□□□ -0.85
CD44-211ENST00000442151 TRPA1O75762 1119 aa9.72□□□□□ -0.85
CD44-211ENST00000442151 IFIT1P09914 478 aaKnown RBP9.72□□□□□ -0.85
CD44-211ENST00000442151 IREB2P48200 963 aaKnown RBP9.72□□□□□ -0.85
CD44-211ENST00000442151 HDLBPQ00341 1268 aaKnown RBP9.72□□□□□ -0.85
CD44-211ENST00000442151 DGKZQ13574 1117 aa9.72□□□□□ -0.85
CD44-211ENST00000442151 RABL6Q3YEC7 729 aaPredicted RBP9.72□□□□□ -0.85
CD44-211ENST00000442151 CFAP100Q494V2 611 aa9.72□□□□□ -0.85
CD44-211ENST00000442151 RASAL3Q86YV0 1011 aa9.72□□□□□ -0.85
CD44-211ENST00000442151 TDRD7Q8NHU6 1098 aaKnown RBP9.72□□□□□ -0.85
CD44-211ENST00000442151 SUCLG2Q96I99 432 aa9.72□□□□□ -0.85
CD44-211ENST00000442151 CSRNP1Q96S65 589 aa9.72□□□□□ -0.85
CD44-211ENST00000442151 MRIQ9BWK5 157 aa9.72□□□□□ -0.85
CD44-211ENST00000442151 DEFB129Q9H1M3 183 aa9.72□□□□□ -0.85
CD44-211ENST00000442151 SERPINA10Q9UK55 444 aa9.72□□□□□ -0.85
CD44-211ENST00000442151 SCN9AQ15858 1988 aa9.72□□□□□ -0.85
CD44-211ENST00000442151 MANSC4A6NHS7 340 aaPredicted RBP9.72□□□□□ -0.85
CD44-211ENST00000442151 UBE2Q2LH0YL09 131 aa9.72□□□□□ -0.85
CD44-211ENST00000442151 TM4SF4P48230 202 aa9.72□□□□□ -0.85
CD44-211ENST00000442151 NOM1Q5C9Z4 860 aaKnown RBP9.72□□□□□ -0.85
CD44-211ENST00000442151 ZBED3Q96IU2 234 aaPredicted RBP9.72□□□□□ -0.85
CD44-211ENST00000442151 MXD3Q9BW11 206 aa9.72□□□□□ -0.85
CD44-211ENST00000442151 SMC4Q9NTJ3 1288 aa9.72□□□□□ -0.85
CD44-211ENST00000442151 GNL3LQ9NVN8 582 aaKnown RBP9.72□□□□□ -0.85
CD44-211ENST00000442151 TMOD2Q9NZR1 351 aa9.72□□□□□ -0.85
CD44-211ENST00000442151 RIPOR2Q9Y4F9 1068 aa9.72□□□□□ -0.85
CD44-211ENST00000442151 ASTN2O75129 1339 aaPredicted RBP9.71□□□□□ -0.85
CD44-211ENST00000442151 IPO8O15397 1037 aaKnown RBP9.71□□□□□ -0.85
CD44-211ENST00000442151 WDHD1O75717 1129 aaPredicted RBP9.71□□□□□ -0.85
CD44-211ENST00000442151 SSH1Q8WYL5 1049 aa9.71□□□□□ -0.85
CD44-211ENST00000442151 ZNF594Q96JF6 807 aaPredicted RBP9.71□□□□□ -0.85
CD44-211ENST00000442151 MCOLN1Q9GZU1 580 aa9.71□□□□□ -0.85
CD44-211ENST00000442151 ANGEL1Q9UNK9 670 aaKnown RBP9.71□□□□□ -0.85
CD44-211ENST00000442151 KIF16BQ96L93 1317 aa9.71□□□□□ -0.86
CD44-211ENST00000442151 COL4A1P02462 1669 aa9.71□□□□□ -0.86
CD44-211ENST00000442151 WTIPA6NIX2 430 aaPredicted RBP9.7□□□□□ -0.86
CD44-211ENST00000442151 PDE8BO95263 885 aa9.7□□□□□ -0.86
CD44-211ENST00000442151 NBPF7P0C2Y1 421 aaPredicted RBP9.7□□□□□ -0.86
CD44-211ENST00000442151 SLC5A1P13866 664 aa9.7□□□□□ -0.86
CD44-211ENST00000442151 ARHGEF6Q15052 776 aa9.7□□□□□ -0.86
CD44-211ENST00000442151 MAP3K11Q16584 847 aa9.7□□□□□ -0.86
CD44-211ENST00000442151 EPHA10Q5JZY3 1008 aa9.7□□□□□ -0.86
CD44-211ENST00000442151 MFSD14BQ5SR56 506 aa9.7□□□□□ -0.86
CD44-211ENST00000442151 LDLRAD1Q5T700 205 aa9.7□□□□□ -0.86
CD44-211ENST00000442151 FBXO33Q7Z6M2 555 aa9.7□□□□□ -0.86
CD44-211ENST00000442151 CTU1Q7Z7A3 348 aaKnown RBP9.7□□□□□ -0.86
CD44-211ENST00000442151 FAM84BQ96KN1 310 aaPredicted RBP9.7□□□□□ -0.86
CD44-211ENST00000442151 BICC1Q9H694 974 aaKnown RBP9.7□□□□□ -0.86
CD44-211ENST00000442151 TSKSQ9UJT2 592 aa9.7□□□□□ -0.86
CD44-211ENST00000442151 TTF2Q9UNY4 1162 aaKnown RBP9.7□□□□□ -0.86
CD44-211ENST00000442151 F8W031 263 aaPredicted RBP9.7□□□□□ -0.86
CD44-211ENST00000442151 UBTFL1P0CB47 393 aaPredicted RBP9.7□□□□□ -0.86
CD44-211ENST00000442151 ZBTB48P10074 688 aaPredicted RBP9.7□□□□□ -0.86
CD44-211ENST00000442151 PUM3Q15397 648 aaKnown RBP9.7□□□□□ -0.86
CD44-211ENST00000442151 DLK2Q6UY11 383 aa9.7□□□□□ -0.86
CD44-211ENST00000442151 WDR66Q8TBY9 1149 aa9.7□□□□□ -0.86
CD44-211ENST00000442151 VEZTQ9HBM0 779 aa9.7□□□□□ -0.86
CD44-211ENST00000442151 AKAP11Q9UKA4 1901 aa9.69□□□□□ -0.86
CD44-211ENST00000442151 IRS2Q9Y4H2 1338 aa9.69□□□□□ -0.86
CD44-211ENST00000442151 SPEF2Q9C093 1822 aa9.69□□□□□ -0.86
CD44-211ENST00000442151 CHRM1P11229 460 aaPredicted RBP9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms