RNA–Protein interactions for RNA: ENST00000441074.3

LTBR-203, Transcript of lymphotoxin beta receptor, humanhuman

TSL 1 (best)

Gene LTBR, Length 2,327 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-203ENST00000441074 ARMCX5Q6P1M9 558 aa13.8□□□□□ -0.2
LTBR-203ENST00000441074 ENGASEQ8NFI3 743 aa13.8□□□□□ -0.2
LTBR-203ENST00000441074 GOLGB1Q14789 3259 aaKnown RBP13.8□□□□□ -0.2
LTBR-203ENST00000441074 FAM160A1Q05DH4 1040 aa13.8□□□□□ -0.2
LTBR-203ENST00000441074 GPS2Q13227 327 aa13.8□□□□□ -0.2
LTBR-203ENST00000441074 TOGARAM1Q9Y4F4 1720 aa13.79□□□□□ -0.2
LTBR-203ENST00000441074 POLR3GO15318 223 aaPredicted RBP13.79□□□□□ -0.2
LTBR-203ENST00000441074 SFPQP23246 707 aaKnown RBP eCLIP13.79□□□□□ -0.2
LTBR-203ENST00000441074 KRT32Q14532 448 aa13.79□□□□□ -0.2
LTBR-203ENST00000441074 ATL3Q6DD88 541 aa13.79□□□□□ -0.2
LTBR-203ENST00000441074 NEK11Q8NG66 645 aa13.79□□□□□ -0.2
LTBR-203ENST00000441074 PLBD2Q8NHP8 589 aa13.79□□□□□ -0.2
LTBR-203ENST00000441074 RFX7Q2KHR2 1363 aa13.79□□□□□ -0.2
LTBR-203ENST00000441074 PLEKHG2Q9H7P9 1386 aa13.79□□□□□ -0.2
LTBR-203ENST00000441074 SMIM5Q71RC9 77 aa13.79□□□□□ -0.2
LTBR-203ENST00000441074 DDX11Q96FC9 970 aa13.79□□□□□ -0.2
LTBR-203ENST00000441074 BPIFA3Q9BQP9 254 aa13.79□□□□□ -0.2
LTBR-203ENST00000441074 EFCC1Q9HA90 598 aa13.79□□□□□ -0.2
LTBR-203ENST00000441074 BCL9O00512 1426 aa13.78□□□□□ -0.2
LTBR-203ENST00000441074 EFCAB8A8MWE9 144 aa13.78□□□□□ -0.2
LTBR-203ENST00000441074 TADA3O75528 432 aa13.78□□□□□ -0.2
LTBR-203ENST00000441074 MAPK8IP2Q13387 824 aaPredicted RBP13.78□□□□□ -0.2
LTBR-203ENST00000441074 CCDC158Q5M9N0 1113 aa13.78□□□□□ -0.2
LTBR-203ENST00000441074 TMC6Q7Z403 805 aa13.78□□□□□ -0.2
LTBR-203ENST00000441074 HOMER1Q86YM7 354 aa13.78□□□□□ -0.2
LTBR-203ENST00000441074 SYNE4Q8N205 404 aa13.78□□□□□ -0.2
LTBR-203ENST00000441074 FSD1Q9BTV5 496 aa13.78□□□□□ -0.2
LTBR-203ENST00000441074 SASH1O94885 1247 aa13.78□□□□□ -0.2
LTBR-203ENST00000441074 CEBPZQ03701 1054 aaKnown RBP13.78□□□□□ -0.2
LTBR-203ENST00000441074 NAA16Q6N069 864 aaPredicted RBP13.78□□□□□ -0.2
LTBR-203ENST00000441074 KRBA2Q6ZNG9 492 aa13.78□□□□□ -0.2
LTBR-203ENST00000441074 ILDR2Q71H61 639 aa13.78□□□□□ -0.2
LTBR-203ENST00000441074 MNS1Q8NEH6 495 aa13.78□□□□□ -0.2
LTBR-203ENST00000441074 SMARCE1Q969G3 411 aa13.78□□□□□ -0.2
LTBR-203ENST00000441074 CCDC85AQ96PX6 553 aaPredicted RBP13.78□□□□□ -0.2
LTBR-203ENST00000441074 XPO4Q9C0E2 1151 aaKnown RBP13.78□□□□□ -0.2
LTBR-203ENST00000441074 ZBTB1Q9Y2K1 713 aa13.78□□□□□ -0.2
LTBR-203ENST00000441074 TAF6LQ9Y6J9 622 aa13.78□□□□□ -0.2
LTBR-203ENST00000441074 A0A087WWV3 80 aa13.77□□□□□ -0.21
LTBR-203ENST00000441074 HLFQ16534 295 aa13.77□□□□□ -0.21
LTBR-203ENST00000441074 EAF2Q96CJ1 260 aaPredicted RBP13.77□□□□□ -0.21
LTBR-203ENST00000441074 ZNF396Q96N95 335 aaPredicted RBP13.77□□□□□ -0.21
LTBR-203ENST00000441074 RASSF4Q9H2L5 321 aa13.77□□□□□ -0.21
LTBR-203ENST00000441074 DNAI1Q9UI46 699 aa13.77□□□□□ -0.21
LTBR-203ENST00000441074 A0A0D9SFI3 127 aa13.76□□□□□ -0.21
LTBR-203ENST00000441074 ST5P78524 1137 aa13.76□□□□□ -0.21
LTBR-203ENST00000441074 LRRFIP1Q32MZ4 808 aaKnown RBP13.76□□□□□ -0.21
LTBR-203ENST00000441074 GORABQ5T7V8 394 aa13.76□□□□□ -0.21
LTBR-203ENST00000441074 SMARCC2Q8TAQ2 1214 aa13.76□□□□□ -0.21
LTBR-203ENST00000441074 LLPHQ9BRT6 129 aaKnown RBP13.76□□□□□ -0.21
LTBR-203ENST00000441074 IFNKQ9P0W0 207 aa13.76□□□□□ -0.21
LTBR-203ENST00000441074 TBC1D2BQ9UPU7 963 aa13.76□□□□□ -0.21
LTBR-203ENST00000441074 SMC2O95347 1197 aa13.76□□□□□ -0.21
LTBR-203ENST00000441074 TBC1D8O95759 1140 aa13.76□□□□□ -0.21
LTBR-203ENST00000441074 CYP19A1P11511 503 aaPredicted RBP13.76□□□□□ -0.21
LTBR-203ENST00000441074 GPTP24298 496 aa13.76□□□□□ -0.21
LTBR-203ENST00000441074 OAS2P29728 719 aaKnown RBP13.76□□□□□ -0.21
LTBR-203ENST00000441074 TRIM65Q6PJ69 517 aa13.76□□□□□ -0.21
LTBR-203ENST00000441074 FAM196AQ6ZSG2 479 aa13.76□□□□□ -0.21
LTBR-203ENST00000441074 FSIP1Q8NA03 581 aa13.76□□□□□ -0.21
LTBR-203ENST00000441074 CWC15Q9P013 229 aaKnown RBP13.76□□□□□ -0.21
LTBR-203ENST00000441074 SEC31AO94979 1220 aaKnown RBP13.75□□□□□ -0.21
LTBR-203ENST00000441074 ZSCAN26Q16670 478 aa13.75□□□□□ -0.21
LTBR-203ENST00000441074 USPL1Q5W0Q7 1092 aa13.75□□□□□ -0.21
LTBR-203ENST00000441074 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.75□□□□□ -0.21
LTBR-203ENST00000441074 STARD3NLO95772 234 aa13.75□□□□□ -0.21
LTBR-203ENST00000441074 SMC1AQ14683 1233 aaKnown RBP13.75□□□□□ -0.21
LTBR-203ENST00000441074 CC2D1AQ6P1N0 951 aaPredicted RBP13.75□□□□□ -0.21
LTBR-203ENST00000441074 NEK1Q96PY6 1258 aa13.75□□□□□ -0.21
LTBR-203ENST00000441074 USP28Q96RU2 1077 aa13.75□□□□□ -0.21
LTBR-203ENST00000441074 PSD3Q9NYI0 1048 aa13.75□□□□□ -0.21
LTBR-203ENST00000441074 SASH3O75995 380 aa13.74□□□□□ -0.21
LTBR-203ENST00000441074 TNNT3P45378 269 aaPredicted RBP13.74□□□□□ -0.21
LTBR-203ENST00000441074 LMBR1LQ6UX01 489 aa13.74□□□□□ -0.21
LTBR-203ENST00000441074 FMR1NBQ8N0W7 255 aaPredicted RBP13.74□□□□□ -0.21
LTBR-203ENST00000441074 FAM89AQ96GI7 184 aa13.74□□□□□ -0.21
LTBR-203ENST00000441074 AK7Q96M32 723 aa13.74□□□□□ -0.21
LTBR-203ENST00000441074 CARD6Q9BX69 1037 aa13.74□□□□□ -0.21
LTBR-203ENST00000441074 FTOQ9C0B1 505 aaKnown RBP eCLIP13.74□□□□□ -0.21
LTBR-203ENST00000441074 CCDC8Q9H0W5 538 aaPredicted RBP13.74□□□□□ -0.21
LTBR-203ENST00000441074 TLR7Q9NYK1 1049 aaKnown RBP13.74□□□□□ -0.21
LTBR-203ENST00000441074 TAF5LO75529 589 aa13.74□□□□□ -0.21
LTBR-203ENST00000441074 URI1O94763 535 aaPredicted RBP13.74□□□□□ -0.21
LTBR-203ENST00000441074 ATP6V1AP38606 617 aa13.74□□□□□ -0.21
LTBR-203ENST00000441074 CASP7P55210 303 aa13.74□□□□□ -0.21
LTBR-203ENST00000441074 Q6ZUG5 572 aa13.74□□□□□ -0.21
LTBR-203ENST00000441074 GPR161Q8N6U8 529 aaKnown RBP13.74□□□□□ -0.21
LTBR-203ENST00000441074 SDF4Q9BRK5 362 aa13.74□□□□□ -0.21
LTBR-203ENST00000441074 BOLA2Q9H3K6 86 aa13.74□□□□□ -0.21
LTBR-203ENST00000441074 ZCCHC17Q9NP64 241 aaKnown RBP13.74□□□□□ -0.21
LTBR-203ENST00000441074 MYO1CO00159 1063 aa13.73□□□□□ -0.21
LTBR-203ENST00000441074 TRIM37O94972 964 aa13.73□□□□□ -0.21
LTBR-203ENST00000441074 HSP90B1P14625 803 aaKnown RBP13.73□□□□□ -0.21
LTBR-203ENST00000441074 ME1P48163 572 aa13.73□□□□□ -0.21
LTBR-203ENST00000441074 EVCP57679 992 aa13.73□□□□□ -0.21
LTBR-203ENST00000441074 ITPK1Q13572 414 aa13.73□□□□□ -0.21
LTBR-203ENST00000441074 CCDC191Q8NCU4 936 aa13.73□□□□□ -0.21
LTBR-203ENST00000441074 GOLGA5Q8TBA6 731 aa13.73□□□□□ -0.21
LTBR-203ENST00000441074 MRPS27Q92552 414 aaKnown RBP13.73□□□□□ -0.21
LTBR-203ENST00000441074 EXOC4Q96A65 974 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms