RNA–Protein interactions for RNA: ENST00000437951.5

PTCH1-209, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 8,049 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-209ENST00000437951 BRD2P25440 801 aaKnown RBP12.91□□□□□ -0.34
PTCH1-209ENST00000437951 PFDN4Q9NQP4 134 aa12.91□□□□□ -0.34
PTCH1-209ENST00000437951 WDR97A6NE52 1622 aa12.91□□□□□ -0.34
PTCH1-209ENST00000437951 CALML3P27482 149 aa12.91□□□□□ -0.34
PTCH1-209ENST00000437951 CCT2P78371 535 aaKnown RBP12.91□□□□□ -0.34
PTCH1-209ENST00000437951 RIOK3O14730 519 aaKnown RBP12.91□□□□□ -0.34
PTCH1-209ENST00000437951 RPL13P26373 211 aaKnown RBP12.91□□□□□ -0.34
PTCH1-209ENST00000437951 ARMC9Q7Z3E5 817 aa12.91□□□□□ -0.34
PTCH1-209ENST00000437951 ECHDC1Q9NTX5 307 aa12.91□□□□□ -0.34
PTCH1-209ENST00000437951 TMPOP42166 694 aaKnown RBP12.9□□□□□ -0.34
PTCH1-209ENST00000437951 RNASELQ05823 741 aaKnown RBP12.9□□□□□ -0.34
PTCH1-209ENST00000437951 CRACR2BQ8N4Y2 399 aaPredicted RBP12.9□□□□□ -0.34
PTCH1-209ENST00000437951 TPX2Q9ULW0 747 aaKnown RBP12.9□□□□□ -0.34
PTCH1-209ENST00000437951 RANBP6O60518 1105 aaKnown RBP12.9□□□□□ -0.34
PTCH1-209ENST00000437951 CFAP221Q4G0U5 840 aa12.9□□□□□ -0.34
PTCH1-209ENST00000437951 FCHSD1Q86WN1 690 aa12.9□□□□□ -0.34
PTCH1-209ENST00000437951 FAM71BQ8TC56 605 aa12.9□□□□□ -0.34
PTCH1-209ENST00000437951 MMRN2Q9H8L6 949 aa12.9□□□□□ -0.34
PTCH1-209ENST00000437951 CACYBPQ9HB71 228 aaKnown RBP12.9□□□□□ -0.34
PTCH1-209ENST00000437951 MYL5Q02045 173 aa12.9□□□□□ -0.34
PTCH1-209ENST00000437951 SULT6B1Q6IMI4 303 aa12.9□□□□□ -0.34
PTCH1-209ENST00000437951 HMGB3O15347 200 aaKnown RBP12.9□□□□□ -0.34
PTCH1-209ENST00000437951 KIF1CO43896 1103 aaKnown RBP12.9□□□□□ -0.34
PTCH1-209ENST00000437951 RASIP1Q5U651 963 aa12.9□□□□□ -0.34
PTCH1-209ENST00000437951 IFNKQ9P0W0 207 aa12.9□□□□□ -0.34
PTCH1-209ENST00000437951 SPTLC2O15270 562 aa12.9□□□□□ -0.34
PTCH1-209ENST00000437951 KRT3P12035 628 aa12.9□□□□□ -0.34
PTCH1-209ENST00000437951 ESRRGP62508 458 aa12.9□□□□□ -0.34
PTCH1-209ENST00000437951 NAA16Q6N069 864 aaPredicted RBP12.9□□□□□ -0.34
PTCH1-209ENST00000437951 SEPT8Q92599 483 aa12.9□□□□□ -0.34
PTCH1-209ENST00000437951 TACO1Q9BSH4 297 aaKnown RBP12.9□□□□□ -0.34
PTCH1-209ENST00000437951 HOMER3Q9NSC5 361 aa12.9□□□□□ -0.34
PTCH1-209ENST00000437951 NUCB1Q02818 461 aa12.89□□□□□ -0.35
PTCH1-209ENST00000437951 XAB2Q9HCS7 855 aaKnown RBP12.89□□□□□ -0.35
PTCH1-209ENST00000437951 U2AF2P26368 475 aaKnown RBP eCLIP12.89□□□□□ -0.35
PTCH1-209ENST00000437951 DEUP1Q05D60 604 aa12.89□□□□□ -0.35
PTCH1-209ENST00000437951 GEN1Q17RS7 908 aa12.89□□□□□ -0.35
PTCH1-209ENST00000437951 ANKRD20A4Q4UJ75 823 aa12.89□□□□□ -0.35
PTCH1-209ENST00000437951 ANKRD20A8PQ5CZ79 823 aa12.89□□□□□ -0.35
PTCH1-209ENST00000437951 ANKRD20A2Q5SQ80 823 aa12.89□□□□□ -0.35
PTCH1-209ENST00000437951 ANKRD20A1Q5TYW2 823 aa12.89□□□□□ -0.35
PTCH1-209ENST00000437951 PPP4R1Q8TF05 950 aa12.89□□□□□ -0.35
PTCH1-209ENST00000437951 NUCKS1Q9H1E3 243 aaKnown RBP12.89□□□□□ -0.35
PTCH1-209ENST00000437951 BOLA2Q9H3K6 86 aa12.89□□□□□ -0.35
PTCH1-209ENST00000437951 SCINQ9Y6U3 715 aa12.89□□□□□ -0.35
PTCH1-209ENST00000437951 TMTC1Q8IUR5 882 aa12.89□□□□□ -0.35
PTCH1-209ENST00000437951 SDCCAG3Q96C92 435 aa12.89□□□□□ -0.35
PTCH1-209ENST00000437951 JPH4Q96JJ6 628 aa12.89□□□□□ -0.35
PTCH1-209ENST00000437951 STK24Q9Y6E0 443 aa12.89□□□□□ -0.35
PTCH1-209ENST00000437951 ZPR1O75312 459 aa12.89□□□□□ -0.35
PTCH1-209ENST00000437951 FAM13AO94988 1023 aa12.89□□□□□ -0.35
PTCH1-209ENST00000437951 C16orf71Q8IYS4 520 aaPredicted RBP12.89□□□□□ -0.35
PTCH1-209ENST00000437951 SETD1BQ9UPS6 1966 aaKnown RBP12.89□□□□□ -0.35
PTCH1-209ENST00000437951 RTL9Q8NET4 1388 aa12.89□□□□□ -0.35
PTCH1-209ENST00000437951 ARHGAP6O43182 974 aa12.89□□□□□ -0.35
PTCH1-209ENST00000437951 CALM1P0DP23 149 aa12.89□□□□□ -0.35
PTCH1-209ENST00000437951 CALM2P0DP24 149 aa12.89□□□□□ -0.35
PTCH1-209ENST00000437951 CALM3P0DP25 149 aa12.89□□□□□ -0.35
PTCH1-209ENST00000437951 KARSQ15046 597 aaKnown RBP12.89□□□□□ -0.35
PTCH1-209ENST00000437951 CCDC92Q53HC0 331 aaPredicted RBP12.89□□□□□ -0.35
PTCH1-209ENST00000437951 SLC26A6Q9BXS9 759 aa12.89□□□□□ -0.35
PTCH1-209ENST00000437951 NCOA2Q15596 1464 aa12.88□□□□□ -0.35
PTCH1-209ENST00000437951 NUTM2GQ5VZR2 741 aa12.88□□□□□ -0.35
PTCH1-209ENST00000437951 NAP1L4Q99733 375 aaKnown RBP12.88□□□□□ -0.35
PTCH1-209ENST00000437951 CENPKQ9BS16 269 aa12.88□□□□□ -0.35
PTCH1-209ENST00000437951 CCDC152Q4G0S7 254 aa12.88□□□□□ -0.35
PTCH1-209ENST00000437951 ZNF530Q6P9A1 599 aaPredicted RBP12.88□□□□□ -0.35
PTCH1-209ENST00000437951 CCDC82Q8N4S0 544 aa12.88□□□□□ -0.35
PTCH1-209ENST00000437951 PANK2Q9BZ23 570 aa12.88□□□□□ -0.35
PTCH1-209ENST00000437951 DDX21Q9NR30 783 aaKnown RBP eCLIP12.88□□□□□ -0.35
PTCH1-209ENST00000437951 STARD3NLO95772 234 aa12.88□□□□□ -0.35
PTCH1-209ENST00000437951 CA8P35219 290 aa12.88□□□□□ -0.35
PTCH1-209ENST00000437951 IL16Q14005 1332 aa12.88□□□□□ -0.35
PTCH1-209ENST00000437951 VGLL3A8MV65 326 aa12.88□□□□□ -0.35
PTCH1-209ENST00000437951 MYL6BP14649 208 aa12.88□□□□□ -0.35
PTCH1-209ENST00000437951 ASIC1P78348 528 aa12.88□□□□□ -0.35
PTCH1-209ENST00000437951 PROSER2Q86WR7 435 aaPredicted RBP12.88□□□□□ -0.35
PTCH1-209ENST00000437951 ISM2Q6H9L7 571 aa12.88□□□□□ -0.35
PTCH1-209ENST00000437951 LMOD1P29536 600 aaPredicted RBP12.87□□□□□ -0.35
PTCH1-209ENST00000437951 FAM160A1Q05DH4 1040 aa12.87□□□□□ -0.35
PTCH1-209ENST00000437951 NRBF2Q96F24 287 aa12.87□□□□□ -0.35
PTCH1-209ENST00000437951 TDRD9Q8NDG6 1382 aaKnown RBP12.87□□□□□ -0.35
PTCH1-209ENST00000437951 FANCD2Q9BXW9 1451 aa12.87□□□□□ -0.35
PTCH1-209ENST00000437951 ELF2Q15723 593 aa12.87□□□□□ -0.35
PTCH1-209ENST00000437951 ALG1Q9BT22 464 aa12.87□□□□□ -0.35
PTCH1-209ENST00000437951 TUBB6Q9BUF5 446 aa12.87□□□□□ -0.35
PTCH1-209ENST00000437951 GAPVD1Q14C86 1478 aa12.87□□□□□ -0.35
PTCH1-209ENST00000437951 AFMP43652 599 aa12.87□□□□□ -0.35
PTCH1-209ENST00000437951 TRIM68Q6AZZ1 485 aa12.87□□□□□ -0.35
PTCH1-209ENST00000437951 SCOCQ9UIL1 159 aa12.87□□□□□ -0.35
PTCH1-209ENST00000437951 ARHGAP5Q13017 1502 aa12.87□□□□□ -0.35
PTCH1-209ENST00000437951 NSD2O96028 1365 aa12.87□□□□□ -0.35
PTCH1-209ENST00000437951 TMEM110-MUSTN1A8MSY1 372 aa12.87□□□□□ -0.35
PTCH1-209ENST00000437951 SPECC1L-ADORA2AF8WAN1 911 aa12.87□□□□□ -0.35
PTCH1-209ENST00000437951 HS2ST1Q7LGA3 356 aa12.87□□□□□ -0.35
PTCH1-209ENST00000437951 ZC3H15Q8WU90 426 aaKnown RBP12.87□□□□□ -0.35
PTCH1-209ENST00000437951 SECISBP2LQ93073 1101 aaKnown RBP12.87□□□□□ -0.35
PTCH1-209ENST00000437951 FAM204AQ9H8W3 233 aa12.87□□□□□ -0.35
PTCH1-209ENST00000437951 ZBTB43O43298 467 aa12.87□□□□□ -0.35
PTCH1-209ENST00000437951 PPP1R21Q6ZMI0 780 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms