RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 PRAMEF18Q5VWM3 479 aa18.76■□□□□ 0.59
LIMS3-201ENST00000437679 CEP85Q6P2H3 762 aa18.76■□□□□ 0.59
LIMS3-201ENST00000437679 TEKT1Q969V4 418 aa18.76■□□□□ 0.59
LIMS3-201ENST00000437679 YTHDC1Q96MU7 727 aaKnown RBP18.76■□□□□ 0.59
LIMS3-201ENST00000437679 VEZTQ9HBM0 779 aa18.76■□□□□ 0.59
LIMS3-201ENST00000437679 GORABQ5T7V8 394 aa18.75■□□□□ 0.59
LIMS3-201ENST00000437679 DEFB129Q9H1M3 183 aa18.75■□□□□ 0.59
LIMS3-201ENST00000437679 COL1A1P02452 1464 aaPredicted RBP18.75■□□□□ 0.59
LIMS3-201ENST00000437679 ZBTB22O15209 634 aa18.74■□□□□ 0.59
LIMS3-201ENST00000437679 TTLL12Q14166 644 aaPredicted RBP18.74■□□□□ 0.59
LIMS3-201ENST00000437679 PDE3AQ14432 1141 aa18.74■□□□□ 0.59
LIMS3-201ENST00000437679 SPDYE2Q495Y8 402 aa18.74■□□□□ 0.59
LIMS3-201ENST00000437679 RGMBQ6NW40 437 aa18.74■□□□□ 0.59
LIMS3-201ENST00000437679 AIDAQ96BJ3 306 aa18.74■□□□□ 0.59
LIMS3-201ENST00000437679 MRIQ9BWK5 157 aa18.74■□□□□ 0.59
LIMS3-201ENST00000437679 NOP58Q9Y2X3 529 aaKnown RBP18.74■□□□□ 0.59
LIMS3-201ENST00000437679 PPP2R3BQ9Y5P8 575 aa18.74■□□□□ 0.59
LIMS3-201ENST00000437679 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.74■□□□□ 0.59
LIMS3-201ENST00000437679 PAPPA2Q9BXP8 1791 aa18.73■□□□□ 0.59
LIMS3-201ENST00000437679 MAP2K2P36507 400 aa18.73■□□□□ 0.59
LIMS3-201ENST00000437679 MAP2K1Q02750 393 aaPredicted RBP18.73■□□□□ 0.59
LIMS3-201ENST00000437679 TNFAIP1Q13829 316 aa18.73■□□□□ 0.59
LIMS3-201ENST00000437679 ZGPATQ8N5A5 531 aaKnown RBP18.73■□□□□ 0.59
LIMS3-201ENST00000437679 TDRD3Q9H7E2 651 aaKnown RBP18.73■□□□□ 0.59
LIMS3-201ENST00000437679 GPR108Q9NPR9 543 aa18.73■□□□□ 0.59
LIMS3-201ENST00000437679 ZNF70Q9UC06 446 aaPredicted RBP18.73■□□□□ 0.59
LIMS3-201ENST00000437679 AOX1Q06278 1338 aa18.73■□□□□ 0.59
LIMS3-201ENST00000437679 LDHBP07195 334 aaKnown RBP18.72■□□□□ 0.59
LIMS3-201ENST00000437679 ZNF157P51786 506 aaPredicted RBP18.72■□□□□ 0.59
LIMS3-201ENST00000437679 CCDC102AQ96A19 550 aa18.72■□□□□ 0.59
LIMS3-201ENST00000437679 ZDHHC15Q96MV8 337 aa18.72■□□□□ 0.59
LIMS3-201ENST00000437679 ZBTB40Q9NUA8 1239 aa18.72■□□□□ 0.59
LIMS3-201ENST00000437679 SALL1Q9NSC2 1324 aa18.72■□□□□ 0.59
LIMS3-201ENST00000437679 AOC2O75106 756 aa18.71■□□□□ 0.59
LIMS3-201ENST00000437679 NOGQ13253 232 aa18.71■□□□□ 0.59
LIMS3-201ENST00000437679 RASGRF1Q13972 1273 aa18.71■□□□□ 0.59
LIMS3-201ENST00000437679 TNNI3KQ59H18 835 aa18.71■□□□□ 0.59
LIMS3-201ENST00000437679 HHIPL2Q6UWX4 724 aa18.71■□□□□ 0.59
LIMS3-201ENST00000437679 ARMC9Q7Z3E5 817 aa18.71■□□□□ 0.59
LIMS3-201ENST00000437679 RPAP2Q8IXW5 612 aaPredicted RBP18.71■□□□□ 0.59
LIMS3-201ENST00000437679 WBP1LQ9NX94 342 aa18.71■□□□□ 0.59
LIMS3-201ENST00000437679 FPGT-TNNI3KV9GXZ4 949 aa18.71■□□□□ 0.59
LIMS3-201ENST00000437679 PDS5AQ29RF7 1337 aaKnown RBP18.71■□□□□ 0.59
LIMS3-201ENST00000437679 THSD7BQ9C0I4 1608 aa18.71■□□□□ 0.58
LIMS3-201ENST00000437679 HMMRO75330 724 aa18.7■□□□□ 0.58
LIMS3-201ENST00000437679 PRDX5P30044 214 aa18.7■□□□□ 0.58
LIMS3-201ENST00000437679 TNNI2P48788 182 aa18.7■□□□□ 0.58
LIMS3-201ENST00000437679 RASA3Q14644 834 aa18.7■□□□□ 0.58
LIMS3-201ENST00000437679 SUPT20HL1Q3ZLR7 823 aa18.7■□□□□ 0.58
LIMS3-201ENST00000437679 MOB2Q70IA6 237 aa18.7■□□□□ 0.58
LIMS3-201ENST00000437679 BEGAINQ9BUH8 593 aa18.7■□□□□ 0.58
LIMS3-201ENST00000437679 TMOD2Q9NZR1 351 aa18.7■□□□□ 0.58
LIMS3-201ENST00000437679 UBE2Q2LH0YL09 131 aa18.69■□□□□ 0.58
LIMS3-201ENST00000437679 UQCRFS1P1P0C7P4 283 aa18.69■□□□□ 0.58
LIMS3-201ENST00000437679 PRKG1Q13976 671 aa18.69■□□□□ 0.58
LIMS3-201ENST00000437679 HSP90AB4PQ58FF6 505 aa18.69■□□□□ 0.58
LIMS3-201ENST00000437679 C20orf194Q5TEA3 1177 aa18.69■□□□□ 0.58
LIMS3-201ENST00000437679 SPTY2D1Q68D10 685 aaPredicted RBP18.69■□□□□ 0.58
LIMS3-201ENST00000437679 ERC1Q8IUD2 1116 aa18.69■□□□□ 0.58
LIMS3-201ENST00000437679 ABCF2Q9UG63 623 aa18.69■□□□□ 0.58
LIMS3-201ENST00000437679 TCP10L2B9ZVM9 353 aa18.68■□□□□ 0.58
LIMS3-201ENST00000437679 CCDC158Q5M9N0 1113 aa18.68■□□□□ 0.58
LIMS3-201ENST00000437679 APOBEC3HQ6NTF7 200 aaKnown RBP18.68■□□□□ 0.58
LIMS3-201ENST00000437679 EXOC6BQ9Y2D4 811 aa18.68■□□□□ 0.58
LIMS3-201ENST00000437679 FAM155AB1AL88 458 aaPredicted RBP18.67■□□□□ 0.58
LIMS3-201ENST00000437679 FOXN1O15353 648 aa18.67■□□□□ 0.58
LIMS3-201ENST00000437679 PPP1R12BO60237 982 aaPredicted RBP18.67■□□□□ 0.58
LIMS3-201ENST00000437679 SLC10A3P09131 477 aa18.67■□□□□ 0.58
LIMS3-201ENST00000437679 ARID4AP29374 1257 aaPredicted RBP18.67■□□□□ 0.58
LIMS3-201ENST00000437679 DIXDC1Q155Q3 683 aa18.67■□□□□ 0.58
LIMS3-201ENST00000437679 TTC39AQ5SRH9 613 aa18.67■□□□□ 0.58
LIMS3-201ENST00000437679 NBPF12Q5TAG4 269 aaPredicted RBP18.67■□□□□ 0.58
LIMS3-201ENST00000437679 DZIP1Q86YF9 867 aaKnown RBP18.67■□□□□ 0.58
LIMS3-201ENST00000437679 SPATA5Q8NB90 893 aa18.67■□□□□ 0.58
LIMS3-201ENST00000437679 DBNDD2Q9BQY9 259 aa18.67■□□□□ 0.58
LIMS3-201ENST00000437679 HMG20BQ9P0W2 317 aa18.67■□□□□ 0.58
LIMS3-201ENST00000437679 ANGEL1Q9UNK9 670 aaKnown RBP18.67■□□□□ 0.58
LIMS3-201ENST00000437679 CTCFP49711 727 aaPredicted RBP18.66■□□□□ 0.58
LIMS3-201ENST00000437679 ERICH6Q7L0X2 663 aa18.66■□□□□ 0.58
LIMS3-201ENST00000437679 RASAL3Q86YV0 1011 aa18.66■□□□□ 0.58
LIMS3-201ENST00000437679 SLF2Q8IX21 1173 aa18.66■□□□□ 0.58
LIMS3-201ENST00000437679 DAGLAQ9Y4D2 1042 aa18.66■□□□□ 0.58
LIMS3-201ENST00000437679 CACNB3P54284 484 aa18.65■□□□□ 0.58
LIMS3-201ENST00000437679 FKBP1CQ5VVH2 108 aa18.65■□□□□ 0.58
LIMS3-201ENST00000437679 MYH2Q9UKX2 1941 aa18.64■□□□□ 0.58
LIMS3-201ENST00000437679 MCAMP43121 646 aa18.64■□□□□ 0.57
LIMS3-201ENST00000437679 KIF23Q02241 960 aaPredicted RBP18.64■□□□□ 0.57
LIMS3-201ENST00000437679 FAM83AQ86UY5 434 aa18.64■□□□□ 0.57
LIMS3-201ENST00000437679 SIRT2Q8IXJ6 389 aa18.64■□□□□ 0.57
LIMS3-201ENST00000437679 ZIC5Q96T25 663 aa18.64■□□□□ 0.57
LIMS3-201ENST00000437679 TMEM39BQ9GZU3 492 aa18.64■□□□□ 0.57
LIMS3-201ENST00000437679 CCDC8Q9H0W5 538 aaPredicted RBP18.64■□□□□ 0.57
LIMS3-201ENST00000437679 SSC5DA1L4H1 1573 aa18.64■□□□□ 0.57
LIMS3-201ENST00000437679 IREB2P48200 963 aaKnown RBP18.63■□□□□ 0.57
LIMS3-201ENST00000437679 MAP3K11Q16584 847 aa18.63■□□□□ 0.57
LIMS3-201ENST00000437679 LDLRAD1Q5T700 205 aa18.63■□□□□ 0.57
LIMS3-201ENST00000437679 CDC42EP5Q6NZY7 148 aa18.63■□□□□ 0.57
LIMS3-201ENST00000437679 PI16Q6UXB8 463 aa18.63■□□□□ 0.57
LIMS3-201ENST00000437679 RHPN1Q8TCX5 695 aa18.63■□□□□ 0.57
LIMS3-201ENST00000437679 EAF2Q96CJ1 260 aaPredicted RBP18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms