RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 SMTNP53814 917 aa13.61□□□□□ -0.23
CCDC88A-207ENST00000436346 DHX58Q96C10 678 aa13.61□□□□□ -0.23
CCDC88A-207ENST00000436346 PLCB3Q01970 1234 aa13.61□□□□□ -0.23
CCDC88A-207ENST00000436346 RBM28Q9NW13 759 aaKnown RBP13.61□□□□□ -0.23
CCDC88A-207ENST00000436346 ABCC2Q92887 1545 aa13.61□□□□□ -0.23
CCDC88A-207ENST00000436346 ATP2A1O14983 1001 aa13.61□□□□□ -0.23
CCDC88A-207ENST00000436346 CYLC1P35663 651 aaPredicted RBP13.61□□□□□ -0.23
CCDC88A-207ENST00000436346 PTPDC1A2A3K4 754 aa13.61□□□□□ -0.23
CCDC88A-207ENST00000436346 ATP10BO94823 1461 aa13.6□□□□□ -0.23
CCDC88A-207ENST00000436346 C11orf95C9JLR9 678 aaPredicted RBP13.6□□□□□ -0.23
CCDC88A-207ENST00000436346 NDC80O14777 642 aa13.6□□□□□ -0.23
CCDC88A-207ENST00000436346 PA2G4Q9UQ80 394 aaKnown RBP13.6□□□□□ -0.23
CCDC88A-207ENST00000436346 CAPZA3Q96KX2 299 aa13.6□□□□□ -0.23
CCDC88A-207ENST00000436346 HAUS7Q99871 368 aa13.6□□□□□ -0.23
CCDC88A-207ENST00000436346 GPCPD1Q9NPB8 672 aa13.6□□□□□ -0.23
CCDC88A-207ENST00000436346 GPHNQ9NQX3 736 aaPredicted RBP13.6□□□□□ -0.23
CCDC88A-207ENST00000436346 MYH9P35579 1960 aaKnown RBP13.6□□□□□ -0.23
CCDC88A-207ENST00000436346 ZWINTO95229 277 aa13.6□□□□□ -0.23
CCDC88A-207ENST00000436346 EIF4A2Q14240 407 aaKnown RBP13.6□□□□□ -0.23
CCDC88A-207ENST00000436346 TXNDC16Q9P2K2 825 aa13.6□□□□□ -0.23
CCDC88A-207ENST00000436346 MRPS27Q92552 414 aaKnown RBP13.6□□□□□ -0.23
CCDC88A-207ENST00000436346 ZCCHC11Q5TAX3 1644 aaKnown RBP13.6□□□□□ -0.23
CCDC88A-207ENST00000436346 NUP160Q12769 1436 aa13.6□□□□□ -0.23
CCDC88A-207ENST00000436346 HCLS1P14317 486 aaPredicted RBP13.6□□□□□ -0.23
CCDC88A-207ENST00000436346 PLIN2Q99541 437 aa13.6□□□□□ -0.23
CCDC88A-207ENST00000436346 STMN4Q9H169 189 aaPredicted RBP13.6□□□□□ -0.23
CCDC88A-207ENST00000436346 RNF113AO15541 343 aaKnown RBP13.6□□□□□ -0.23
CCDC88A-207ENST00000436346 RXRAP19793 462 aa13.59□□□□□ -0.23
CCDC88A-207ENST00000436346 NSRP1Q9H0G5 558 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-207ENST00000436346 ZFYVE16Q7Z3T8 1539 aa13.59□□□□□ -0.23
CCDC88A-207ENST00000436346 HS2ST1Q7LGA3 356 aa13.59□□□□□ -0.23
CCDC88A-207ENST00000436346 CCDC171Q6TFL3 1326 aa13.59□□□□□ -0.23
CCDC88A-207ENST00000436346 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-207ENST00000436346 PPANQ9NQ55 473 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-207ENST00000436346 CTNND2Q9UQB3 1225 aa13.59□□□□□ -0.23
CCDC88A-207ENST00000436346 SYT1P21579 422 aa13.59□□□□□ -0.23
CCDC88A-207ENST00000436346 CWF19L2Q2TBE0 894 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-207ENST00000436346 PRDM10Q9NQV6 1147 aa13.59□□□□□ -0.23
CCDC88A-207ENST00000436346 TTC41PQ6P2S7 1318 aa13.59□□□□□ -0.23
CCDC88A-207ENST00000436346 SLC8A3P57103 927 aa13.59□□□□□ -0.23
CCDC88A-207ENST00000436346 CBX1P83916 185 aa13.59□□□□□ -0.23
CCDC88A-207ENST00000436346 KIFC2Q96AC6 838 aa13.59□□□□□ -0.23
CCDC88A-207ENST00000436346 STK32BQ9NY57 414 aa13.59□□□□□ -0.23
CCDC88A-207ENST00000436346 ATP6V0A2Q9Y487 856 aa13.59□□□□□ -0.23
CCDC88A-207ENST00000436346 CACNA1FO60840 1977 aa13.59□□□□□ -0.23
CCDC88A-207ENST00000436346 EIF6P56537 245 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-207ENST00000436346 CRCPO75575 148 aa13.59□□□□□ -0.23
CCDC88A-207ENST00000436346 BRDTQ58F21 947 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-207ENST00000436346 GINS2Q9Y248 185 aa13.59□□□□□ -0.23
CCDC88A-207ENST00000436346 GABPAQ06546 454 aa13.58□□□□□ -0.23
CCDC88A-207ENST00000436346 PUM3Q15397 648 aaKnown RBP13.58□□□□□ -0.23
CCDC88A-207ENST00000436346 PPP1R7Q15435 360 aa13.58□□□□□ -0.23
CCDC88A-207ENST00000436346 AOPEPQ8N6M6 819 aa13.58□□□□□ -0.23
CCDC88A-207ENST00000436346 SMC1BQ8NDV3 1235 aa13.58□□□□□ -0.23
CCDC88A-207ENST00000436346 COL17A1Q9UMD9 1497 aaPredicted RBP13.58□□□□□ -0.23
CCDC88A-207ENST00000436346 SHANK2Q9UPX8 1470 aa13.58□□□□□ -0.23
CCDC88A-207ENST00000436346 KRT79Q5XKE5 535 aa13.58□□□□□ -0.24
CCDC88A-207ENST00000436346 TEX11Q8IYF3 940 aa13.58□□□□□ -0.24
CCDC88A-207ENST00000436346 DCAF5Q96JK2 942 aa13.58□□□□□ -0.24
CCDC88A-207ENST00000436346 BIRC3Q13489 604 aa13.58□□□□□ -0.24
CCDC88A-207ENST00000436346 EAPPQ56P03 285 aaPredicted RBP13.58□□□□□ -0.24
CCDC88A-207ENST00000436346 NACA2Q9H009 215 aa13.58□□□□□ -0.24
CCDC88A-207ENST00000436346 ATP2A2P16615 1042 aaKnown RBP13.58□□□□□ -0.24
CCDC88A-207ENST00000436346 PDE1AP54750 535 aa13.58□□□□□ -0.24
CCDC88A-207ENST00000436346 WDR44Q5JSH3 913 aa13.58□□□□□ -0.24
CCDC88A-207ENST00000436346 CFAP58Q5T655 872 aa13.58□□□□□ -0.24
CCDC88A-207ENST00000436346 DTHD1Q6ZMT9 781 aa13.58□□□□□ -0.24
CCDC88A-207ENST00000436346 TSGA10Q9BZW7 698 aa13.58□□□□□ -0.24
CCDC88A-207ENST00000436346 POLR1AO95602 1720 aaPredicted RBP13.58□□□□□ -0.24
CCDC88A-207ENST00000436346 AGTPBP1Q9UPW5 1226 aa13.58□□□□□ -0.24
CCDC88A-207ENST00000436346 ZMYM4Q5VZL5 1548 aa13.58□□□□□ -0.24
CCDC88A-207ENST00000436346 C19orf44Q9H6X5 657 aa13.58□□□□□ -0.24
CCDC88A-207ENST00000436346 SOS1Q07889 1333 aaPredicted RBP13.58□□□□□ -0.24
CCDC88A-207ENST00000436346 VWA3AA6NCI4 1184 aa13.58□□□□□ -0.24
CCDC88A-207ENST00000436346 MAP7D1Q3KQU3 841 aa13.58□□□□□ -0.24
CCDC88A-207ENST00000436346 TIGD1Q96MW7 591 aa13.58□□□□□ -0.24
CCDC88A-207ENST00000436346 ZKSCAN3Q9BRR0 538 aa13.58□□□□□ -0.24
CCDC88A-207ENST00000436346 IVNS1ABPQ9Y6Y0 642 aa13.58□□□□□ -0.24
CCDC88A-207ENST00000436346 A0A1W2PP64 1363 aa13.57□□□□□ -0.24
CCDC88A-207ENST00000436346 ALDH1L1O75891 902 aa13.57□□□□□ -0.24
CCDC88A-207ENST00000436346 RASA3Q14644 834 aa13.57□□□□□ -0.24
CCDC88A-207ENST00000436346 LMBR1Q8WVP7 490 aa13.57□□□□□ -0.24
CCDC88A-207ENST00000436346 SAMD9Q5K651 1589 aa13.57□□□□□ -0.24
CCDC88A-207ENST00000436346 EPB41P11171 864 aaKnown RBP13.57□□□□□ -0.24
CCDC88A-207ENST00000436346 CCDC25Q86WR0 208 aa13.57□□□□□ -0.24
CCDC88A-207ENST00000436346 TMX3Q96JJ7 454 aa13.57□□□□□ -0.24
CCDC88A-207ENST00000436346 ESYT1Q9BSJ8 1104 aa13.57□□□□□ -0.24
CCDC88A-207ENST00000436346 GOLGA1Q92805 767 aa13.57□□□□□ -0.24
CCDC88A-207ENST00000436346 CDC42BPGQ6DT37 1551 aa13.57□□□□□ -0.24
CCDC88A-207ENST00000436346 SLU7O95391 586 aaKnown RBP13.57□□□□□ -0.24
CCDC88A-207ENST00000436346 TBC1D31Q96DN5 1066 aa13.57□□□□□ -0.24
CCDC88A-207ENST00000436346 APOBRQ0VD83 1088 aa13.57□□□□□ -0.24
CCDC88A-207ENST00000436346 KIFAP3Q92845 792 aa13.57□□□□□ -0.24
CCDC88A-207ENST00000436346 SPTLC2O15270 562 aa13.57□□□□□ -0.24
CCDC88A-207ENST00000436346 RNF34Q969K3 372 aa13.57□□□□□ -0.24
CCDC88A-207ENST00000436346 USH1GQ495M9 461 aa13.57□□□□□ -0.24
CCDC88A-207ENST00000436346 GGA1Q9UJY5 639 aa13.57□□□□□ -0.24
CCDC88A-207ENST00000436346 RRP9O43818 475 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-207ENST00000436346 USP48Q86UV5 1035 aa13.56□□□□□ -0.24
CCDC88A-207ENST00000436346 RAPGEF1Q13905 1077 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms