RNA–Protein interactions for RNA: ENST00000434376.6

SCARF1-203, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 3,342 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-203ENST00000434376 DSCC1Q9BVC3 393 aa18.17■□□□□ 0.5
SCARF1-203ENST00000434376 CTNNA3Q9UI47 895 aa18.17■□□□□ 0.5
SCARF1-203ENST00000434376 TRPM3Q9HCF6 1732 aaPredicted RBP18.16■□□□□ 0.5
SCARF1-203ENST00000434376 FOXP2O15409 715 aa18.16■□□□□ 0.5
SCARF1-203ENST00000434376 KINO60870 393 aaKnown RBP18.16■□□□□ 0.5
SCARF1-203ENST00000434376 CYP7A1P22680 504 aa18.16■□□□□ 0.5
SCARF1-203ENST00000434376 ERFEQ4G0M1 354 aa18.16■□□□□ 0.5
SCARF1-203ENST00000434376 SPATA5Q8NB90 893 aa18.16■□□□□ 0.5
SCARF1-203ENST00000434376 MYRIPQ8NFW9 859 aa18.16■□□□□ 0.5
SCARF1-203ENST00000434376 ZNF592Q92610 1267 aa18.16■□□□□ 0.5
SCARF1-203ENST00000434376 PTGS1P23219 599 aa18.16■□□□□ 0.5
SCARF1-203ENST00000434376 METAP2P50579 478 aaKnown RBP eCLIP18.16■□□□□ 0.5
SCARF1-203ENST00000434376 RESTQ13127 1097 aa18.16■□□□□ 0.5
SCARF1-203ENST00000434376 PDILTQ8N807 584 aa18.16■□□□□ 0.5
SCARF1-203ENST00000434376 KCNJ14Q9UNX9 436 aa18.16■□□□□ 0.5
SCARF1-203ENST00000434376 SLC5A1P13866 664 aa18.16■□□□□ 0.5
SCARF1-203ENST00000434376 RANBP6O60518 1105 aaKnown RBP18.15■□□□□ 0.5
SCARF1-203ENST00000434376 PFKFB2O60825 505 aa18.15■□□□□ 0.5
SCARF1-203ENST00000434376 ANTXR2P58335 489 aa18.15■□□□□ 0.5
SCARF1-203ENST00000434376 LCORLQ8N3X6 602 aa18.15■□□□□ 0.5
SCARF1-203ENST00000434376 GOLPH3LQ9H4A5 285 aa18.15■□□□□ 0.5
SCARF1-203ENST00000434376 KLRK1P26718 216 aa18.15■□□□□ 0.5
SCARF1-203ENST00000434376 KCNB2Q92953 911 aa18.15■□□□□ 0.5
SCARF1-203ENST00000434376 CBX8Q9HC52 389 aa18.15■□□□□ 0.5
SCARF1-203ENST00000434376 UBAP1LF5GYI3 381 aa18.15■□□□□ 0.5
SCARF1-203ENST00000434376 GOLGA6L19H0YKK7 550 aa18.15■□□□□ 0.5
SCARF1-203ENST00000434376 FDPSP14324 419 aaKnown RBP18.15■□□□□ 0.5
SCARF1-203ENST00000434376 DYNLL1P63167 89 aaKnown RBP18.15■□□□□ 0.5
SCARF1-203ENST00000434376 CHRNDQ07001 517 aa18.15■□□□□ 0.5
SCARF1-203ENST00000434376 LRRFIP1Q32MZ4 808 aaKnown RBP18.15■□□□□ 0.5
SCARF1-203ENST00000434376 SMAP1Q8IYB5 467 aaPredicted RBP18.15■□□□□ 0.5
SCARF1-203ENST00000434376 ALG1Q9BT22 464 aa18.15■□□□□ 0.5
SCARF1-203ENST00000434376 MAP3K12Q12852 859 aa18.14■□□□□ 0.49
SCARF1-203ENST00000434376 CREBRFQ8IUR6 639 aa18.14■□□□□ 0.49
SCARF1-203ENST00000434376 NEDD4P46934 1319 aa18.14■□□□□ 0.49
SCARF1-203ENST00000434376 GOLGA8AA7E2F4 631 aa18.14■□□□□ 0.49
SCARF1-203ENST00000434376 GNPATO15228 680 aa18.14■□□□□ 0.49
SCARF1-203ENST00000434376 EPB41L2O43491 1005 aaKnown RBP18.14■□□□□ 0.49
SCARF1-203ENST00000434376 HMGB1P09429 215 aaKnown RBP18.14■□□□□ 0.49
SCARF1-203ENST00000434376 PUM3Q15397 648 aaKnown RBP18.14■□□□□ 0.49
SCARF1-203ENST00000434376 PDCL2Q8N4E4 241 aa18.14■□□□□ 0.49
SCARF1-203ENST00000434376 CIAO1O76071 339 aa18.13■□□□□ 0.49
SCARF1-203ENST00000434376 ADD2P35612 726 aa18.13■□□□□ 0.49
SCARF1-203ENST00000434376 CCDC186Q7Z3E2 898 aa18.13■□□□□ 0.49
SCARF1-203ENST00000434376 CFAP45Q9UL16 551 aa18.13■□□□□ 0.49
SCARF1-203ENST00000434376 MRVI1Q9Y6F6 885 aa18.13■□□□□ 0.49
SCARF1-203ENST00000434376 CSF1RP07333 972 aa18.13■□□□□ 0.49
SCARF1-203ENST00000434376 HMGN5P82970 282 aaKnown RBP18.13■□□□□ 0.49
SCARF1-203ENST00000434376 ARID5BQ14865 1188 aa18.13■□□□□ 0.49
SCARF1-203ENST00000434376 CLIC6Q96NY7 704 aa18.13■□□□□ 0.49
SCARF1-203ENST00000434376 U2AF2P26368 475 aaKnown RBP eCLIP18.13■□□□□ 0.49
SCARF1-203ENST00000434376 CDC27P30260 824 aa18.13■□□□□ 0.49
SCARF1-203ENST00000434376 EXOSC10Q01780 885 aaKnown RBP18.13■□□□□ 0.49
SCARF1-203ENST00000434376 INTS5Q6P9B9 1019 aaKnown RBP18.13■□□□□ 0.49
SCARF1-203ENST00000434376 CCDC69A6NI79 296 aa18.12■□□□□ 0.49
SCARF1-203ENST00000434376 KIF28PB7ZC32 967 aa18.12■□□□□ 0.49
SCARF1-203ENST00000434376 C11orf57Q6ZUT1 292 aaPredicted RBP18.12■□□□□ 0.49
SCARF1-203ENST00000434376 CELF1Q92879 486 aaKnown RBP18.12■□□□□ 0.49
SCARF1-203ENST00000434376 ZNF710Q8N1W2 664 aa18.12■□□□□ 0.49
SCARF1-203ENST00000434376 BCL2L12Q9HB09 334 aa18.12■□□□□ 0.49
SCARF1-203ENST00000434376 CCDC152Q4G0S7 254 aa18.11■□□□□ 0.49
SCARF1-203ENST00000434376 LPIN2Q92539 896 aa18.11■□□□□ 0.49
SCARF1-203ENST00000434376 ZNF142P52746 1687 aaPredicted RBP18.11■□□□□ 0.49
SCARF1-203ENST00000434376 ZSWIM5Q9P217 1185 aa18.11■□□□□ 0.49
SCARF1-203ENST00000434376 PYCARDQ9ULZ3 195 aa18.11■□□□□ 0.49
SCARF1-203ENST00000434376 PALLDQ8WX93 1383 aa18.11■□□□□ 0.49
SCARF1-203ENST00000434376 AFDNP55196 1824 aaKnown RBP18.11■□□□□ 0.49
SCARF1-203ENST00000434376 IL6STP40189 918 aaPredicted RBP18.11■□□□□ 0.49
SCARF1-203ENST00000434376 SLC12A7Q9Y666 1083 aa18.11■□□□□ 0.49
SCARF1-203ENST00000434376 CARMIL3Q8ND23 1372 aa18.11■□□□□ 0.49
SCARF1-203ENST00000434376 IFNL3Q8IZI9 196 aa18.1■□□□□ 0.49
SCARF1-203ENST00000434376 C16orf45Q96MC5 204 aaPredicted RBP18.1■□□□□ 0.49
SCARF1-203ENST00000434376 ZBTB43O43298 467 aa18.1■□□□□ 0.49
SCARF1-203ENST00000434376 NBPF5PQ86XG9 351 aaPredicted RBP18.1■□□□□ 0.49
SCARF1-203ENST00000434376 GPR108Q9NPR9 543 aa18.1■□□□□ 0.49
SCARF1-203ENST00000434376 PCDHA7Q9UN72 937 aa18.1■□□□□ 0.49
SCARF1-203ENST00000434376 ALS2Q96Q42 1657 aa18.1■□□□□ 0.49
SCARF1-203ENST00000434376 RIOK3O14730 519 aaKnown RBP18.1■□□□□ 0.49
SCARF1-203ENST00000434376 ZFYP08048 801 aaPredicted RBP18.1■□□□□ 0.49
SCARF1-203ENST00000434376 GUCY1A2P33402 732 aa18.1■□□□□ 0.49
SCARF1-203ENST00000434376 NDUFA8P51970 172 aa18.1■□□□□ 0.49
SCARF1-203ENST00000434376 MFSD6Q6ZSS7 791 aa18.1■□□□□ 0.49
SCARF1-203ENST00000434376 EIF5P55010 431 aaKnown RBP18.09■□□□□ 0.49
SCARF1-203ENST00000434376 NBPF3Q9H094 633 aa18.09■□□□□ 0.49
SCARF1-203ENST00000434376 EPB41L4AQ9HCS5 686 aaPredicted RBP18.09■□□□□ 0.49
SCARF1-203ENST00000434376 TRMT1Q9NXH9 659 aaKnown RBP18.09■□□□□ 0.49
SCARF1-203ENST00000434376 SCN11AQ9UI33 1791 aa18.09■□□□□ 0.49
SCARF1-203ENST00000434376 ADGRA1Q86SQ6 560 aa18.09■□□□□ 0.49
SCARF1-203ENST00000434376 AOPEPQ8N6M6 819 aa18.09■□□□□ 0.49
SCARF1-203ENST00000434376 FAM200AQ8TCP9 573 aa18.09■□□□□ 0.49
SCARF1-203ENST00000434376 AATFQ9NY61 560 aaKnown RBP eCLIP18.09■□□□□ 0.49
SCARF1-203ENST00000434376 ANGEL1Q9UNK9 670 aaKnown RBP18.09■□□□□ 0.49
SCARF1-203ENST00000434376 IARSP41252 1262 aaKnown RBP18.08■□□□□ 0.49
SCARF1-203ENST00000434376 TRIM29Q14134 588 aa18.08■□□□□ 0.49
SCARF1-203ENST00000434376 FAM47AQ5JRC9 791 aa18.08■□□□□ 0.49
SCARF1-203ENST00000434376 ZNF771Q7L3S4 317 aaPredicted RBP18.08■□□□□ 0.49
SCARF1-203ENST00000434376 ANKRD18AQ8IVF6 992 aa18.08■□□□□ 0.49
SCARF1-203ENST00000434376 DCCP43146 1447 aa18.08■□□□□ 0.49
SCARF1-203ENST00000434376 TMEM87AQ8NBN3 555 aa18.08■□□□□ 0.48
SCARF1-203ENST00000434376 PRIMPOLQ96LW4 560 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms