RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 ANKRD13AQ8IZ07 590 aa18.2■□□□□ 0.5
SDC1-204ENST00000429035 ELP3Q9H9T3 547 aa18.2■□□□□ 0.5
SDC1-204ENST00000429035 AK9Q5TCS8 1911 aa18.19■□□□□ 0.5
SDC1-204ENST00000429035 IGF2BP3O00425 579 aaKnown RBP eCLIP18.19■□□□□ 0.5
SDC1-204ENST00000429035 USP2O75604 605 aaPredicted RBP18.19■□□□□ 0.5
SDC1-204ENST00000429035 TNNI2P48788 182 aa18.19■□□□□ 0.5
SDC1-204ENST00000429035 CDAN1Q8IWY9 1227 aa18.19■□□□□ 0.5
SDC1-204ENST00000429035 TMEM39BQ9GZU3 492 aa18.19■□□□□ 0.5
SDC1-204ENST00000429035 PDE8BO95263 885 aa18.18■□□□□ 0.5
SDC1-204ENST00000429035 IFIT1P09914 478 aaKnown RBP18.18■□□□□ 0.5
SDC1-204ENST00000429035 GJA5P36382 358 aa18.18■□□□□ 0.5
SDC1-204ENST00000429035 BCAMP50895 628 aa18.18■□□□□ 0.5
SDC1-204ENST00000429035 CACNB3P54284 484 aa18.18■□□□□ 0.5
SDC1-204ENST00000429035 FBXO46Q6PJ61 603 aaPredicted RBP18.18■□□□□ 0.5
SDC1-204ENST00000429035 FBXO33Q7Z6M2 555 aa18.18■□□□□ 0.5
SDC1-204ENST00000429035 TBC1D22AQ8WUA7 517 aa18.18■□□□□ 0.5
SDC1-204ENST00000429035 TMOD2Q9NZR1 351 aa18.18■□□□□ 0.5
SDC1-204ENST00000429035 INHBEP58166 350 aa18.17■□□□□ 0.5
SDC1-204ENST00000429035 SLFN5Q08AF3 891 aa18.17■□□□□ 0.5
SDC1-204ENST00000429035 PUM3Q15397 648 aaKnown RBP18.17■□□□□ 0.5
SDC1-204ENST00000429035 NOM1Q5C9Z4 860 aaKnown RBP18.17■□□□□ 0.5
SDC1-204ENST00000429035 VGLL2Q8N8G2 317 aa18.17■□□□□ 0.5
SDC1-204ENST00000429035 TEKT1Q969V4 418 aa18.17■□□□□ 0.5
SDC1-204ENST00000429035 OPTNQ96CV9 577 aa18.17■□□□□ 0.5
SDC1-204ENST00000429035 CDCA7LQ96GN5 454 aa18.17■□□□□ 0.5
SDC1-204ENST00000429035 CFHR5Q9BXR6 569 aa18.17■□□□□ 0.5
SDC1-204ENST00000429035 TRIM17Q9Y577 477 aa18.17■□□□□ 0.5
SDC1-204ENST00000429035 SLC5A1P13866 664 aa18.16■□□□□ 0.5
SDC1-204ENST00000429035 OTUD7BQ6GQQ9 843 aa18.16■□□□□ 0.5
SDC1-204ENST00000429035 USP44Q9H0E7 712 aa18.16■□□□□ 0.5
SDC1-204ENST00000429035 SIL1Q9H173 461 aa18.16■□□□□ 0.5
SDC1-204ENST00000429035 MAST3O60307 1309 aa18.16■□□□□ 0.5
SDC1-204ENST00000429035 CNKSR2Q8WXI2 1034 aa18.15■□□□□ 0.5
SDC1-204ENST00000429035 CSADQ9Y600 493 aa18.15■□□□□ 0.5
SDC1-204ENST00000429035 UNCXA6NJT0 531 aa18.14■□□□□ 0.49
SDC1-204ENST00000429035 UBTFL1P0CB47 393 aaPredicted RBP18.14■□□□□ 0.49
SDC1-204ENST00000429035 CRHR2Q13324 411 aa18.14■□□□□ 0.49
SDC1-204ENST00000429035 VGLL4Q14135 290 aa18.14■□□□□ 0.49
SDC1-204ENST00000429035 ALDH1L2Q3SY69 923 aa18.14■□□□□ 0.49
SDC1-204ENST00000429035 CD99L2Q8TCZ2 262 aa18.14■□□□□ 0.49
SDC1-204ENST00000429035 TEPSINQ96N21 525 aa18.14■□□□□ 0.49
SDC1-204ENST00000429035 EYA2O00167 538 aa18.13■□□□□ 0.49
SDC1-204ENST00000429035 OTUD5Q96G74 571 aa18.13■□□□□ 0.49
SDC1-204ENST00000429035 FGFR2P21802 821 aa18.12■□□□□ 0.49
SDC1-204ENST00000429035 HDLBPQ00341 1268 aaKnown RBP18.12■□□□□ 0.49
SDC1-204ENST00000429035 OTOP1Q7RTM1 612 aa18.12■□□□□ 0.49
SDC1-204ENST00000429035 ERO1AQ96HE7 468 aa18.12■□□□□ 0.49
SDC1-204ENST00000429035 TNRC18O15417 2968 aaPredicted RBP18.12■□□□□ 0.49
SDC1-204ENST00000429035 CCL15-CCL14A0A0B4J2E2 113 aa18.11■□□□□ 0.49
SDC1-204ENST00000429035 RFX5P48382 616 aaPredicted RBP18.11■□□□□ 0.49
SDC1-204ENST00000429035 MAP3K9P80192 1104 aa18.11■□□□□ 0.49
SDC1-204ENST00000429035 CCL15Q16663 113 aa18.11■□□□□ 0.49
SDC1-204ENST00000429035 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.11■□□□□ 0.49
SDC1-204ENST00000429035 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.11■□□□□ 0.49
SDC1-204ENST00000429035 LPIN2Q92539 896 aa18.11■□□□□ 0.49
SDC1-204ENST00000429035 ZDHHC15Q96MV8 337 aa18.11■□□□□ 0.49
SDC1-204ENST00000429035 WRNIP1Q96S55 665 aa18.11■□□□□ 0.49
SDC1-204ENST00000429035 KIF16BQ96L93 1317 aa18.11■□□□□ 0.49
SDC1-204ENST00000429035 MYH2Q9UKX2 1941 aa18.1■□□□□ 0.49
SDC1-204ENST00000429035 TAF1CQ15572 869 aaPredicted RBP18.1■□□□□ 0.49
SDC1-204ENST00000429035 ATP2B3Q16720 1220 aa18.1■□□□□ 0.49
SDC1-204ENST00000429035 PTPN18Q99952 460 aa18.1■□□□□ 0.49
SDC1-204ENST00000429035 NOB1Q9ULX3 412 aaKnown RBP18.1■□□□□ 0.49
SDC1-204ENST00000429035 LRRFIP2Q9Y608 721 aaKnown RBP18.1■□□□□ 0.49
SDC1-204ENST00000429035 DOCK2Q92608 1830 aa18.09■□□□□ 0.49
SDC1-204ENST00000429035 GTF2A2P52657 109 aa18.09■□□□□ 0.49
SDC1-204ENST00000429035 WDR66Q8TBY9 1149 aa18.09■□□□□ 0.49
SDC1-204ENST00000429035 BRI3BPQ8WY22 251 aa18.09■□□□□ 0.49
SDC1-204ENST00000429035 API5Q9BZZ5 524 aaKnown RBP18.09■□□□□ 0.49
SDC1-204ENST00000429035 SUGT1Q9Y2Z0 365 aa18.09■□□□□ 0.49
SDC1-204ENST00000429035 ZSWIM8A7E2V4 1837 aa18.09■□□□□ 0.49
SDC1-204ENST00000429035 SP3Q02447 781 aa18.08■□□□□ 0.48
SDC1-204ENST00000429035 DCAF15Q66K64 600 aa18.08■□□□□ 0.48
SDC1-204ENST00000429035 APOBEC3HQ6NTF7 200 aaKnown RBP18.08■□□□□ 0.48
SDC1-204ENST00000429035 ATG9AQ7Z3C6 839 aa18.08■□□□□ 0.48
SDC1-204ENST00000429035 HOOK2Q96ED9 719 aa18.08■□□□□ 0.48
SDC1-204ENST00000429035 EFCC1Q9HA90 598 aa18.08■□□□□ 0.48
SDC1-204ENST00000429035 CEP126Q9P2H0 1117 aa18.08■□□□□ 0.48
SDC1-204ENST00000429035 PA2G4Q9UQ80 394 aaKnown RBP18.08■□□□□ 0.48
SDC1-204ENST00000429035 RPAP1Q9BWH6 1393 aaPredicted RBP18.07■□□□□ 0.48
SDC1-204ENST00000429035 TESPA1A2RU30 521 aaPredicted RBP18.07■□□□□ 0.48
SDC1-204ENST00000429035 SLC34A2O95436 690 aa18.07■□□□□ 0.48
SDC1-204ENST00000429035 PRDX5P30044 214 aa18.07■□□□□ 0.48
SDC1-204ENST00000429035 TCP10Q12799 353 aa18.07■□□□□ 0.48
SDC1-204ENST00000429035 DIXDC1Q155Q3 683 aa18.07■□□□□ 0.48
SDC1-204ENST00000429035 FAM83AQ86UY5 434 aa18.07■□□□□ 0.48
SDC1-204ENST00000429035 MS4A4AQ96JQ5 239 aa18.07■□□□□ 0.48
SDC1-204ENST00000429035 ZFYVE28Q9HCC9 887 aa18.07■□□□□ 0.48
SDC1-204ENST00000429035 GNL3LQ9NVN8 582 aaKnown RBP18.07■□□□□ 0.48
SDC1-204ENST00000429035 SNCAIPQ9Y6H5 919 aa18.07■□□□□ 0.48
SDC1-204ENST00000429035 RBBP6Q7Z6E9 1792 aaKnown RBP18.07■□□□□ 0.48
SDC1-204ENST00000429035 SPDYE5A6NIY4 337 aa18.06■□□□□ 0.48
SDC1-204ENST00000429035 HHIPL2Q6UWX4 724 aa18.06■□□□□ 0.48
SDC1-204ENST00000429035 MIGA2Q7L4E1 593 aa18.06■□□□□ 0.48
SDC1-204ENST00000429035 FAM43AQ8N2R8 423 aa18.06■□□□□ 0.48
SDC1-204ENST00000429035 ZKSCAN4Q969J2 545 aaPredicted RBP18.06■□□□□ 0.48
SDC1-204ENST00000429035 MEIS3Q99687 375 aa18.06■□□□□ 0.48
SDC1-204ENST00000429035 DAGLAQ9Y4D2 1042 aa18.06■□□□□ 0.48
SDC1-204ENST00000429035 WDHD1O75717 1129 aaPredicted RBP18.05■□□□□ 0.48
SDC1-204ENST00000429035 CIAO1O76071 339 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms