RNA–Protein interactions for RNA: ENST00000424478.5

PRPF39-202, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,174 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-202ENST00000424478 MAP3K12Q12852 859 aa16.22■□□□□ 0.19
PRPF39-202ENST00000424478 WDR66Q8TBY9 1149 aa16.22■□□□□ 0.19
PRPF39-202ENST00000424478 NSUN4Q96CB9 384 aaKnown RBP16.22■□□□□ 0.19
PRPF39-202ENST00000424478 ESYT1Q9BSJ8 1104 aa16.22■□□□□ 0.19
PRPF39-202ENST00000424478 TTF2Q9UNY4 1162 aaKnown RBP16.22■□□□□ 0.19
PRPF39-202ENST00000424478 MAST3O60307 1309 aa16.22■□□□□ 0.19
PRPF39-202ENST00000424478 TTF1Q15361 905 aaPredicted RBP16.22■□□□□ 0.19
PRPF39-202ENST00000424478 SLC4A8Q2Y0W8 1093 aa16.22■□□□□ 0.19
PRPF39-202ENST00000424478 TCRBV5S4A2TA0A5A2 114 aa16.22■□□□□ 0.19
PRPF39-202ENST00000424478 C9orf131Q5VYM1 1079 aa16.22■□□□□ 0.19
PRPF39-202ENST00000424478 ARMT1Q9H993 441 aa16.22■□□□□ 0.19
PRPF39-202ENST00000424478 ANO2Q9NQ90 1003 aa16.22■□□□□ 0.19
PRPF39-202ENST00000424478 SCAF8Q9UPN6 1271 aaKnown RBP16.22■□□□□ 0.19
PRPF39-202ENST00000424478 NAA16Q6N069 864 aaPredicted RBP16.21■□□□□ 0.19
PRPF39-202ENST00000424478 AATFQ9NY61 560 aaKnown RBP eCLIP16.21■□□□□ 0.192e-7■■■■■ 32.8
PRPF39-202ENST00000424478 FAM205AQ6ZU69 1335 aa16.21■□□□□ 0.19
PRPF39-202ENST00000424478 LMNB1P20700 586 aa16.21■□□□□ 0.19
PRPF39-202ENST00000424478 PTH1RQ03431 593 aa16.21■□□□□ 0.19
PRPF39-202ENST00000424478 ZNF646O15015 1829 aaPredicted RBP16.21■□□□□ 0.19
PRPF39-202ENST00000424478 PRKAB2O43741 272 aa16.2■□□□□ 0.18
PRPF39-202ENST00000424478 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.2■□□□□ 0.18
PRPF39-202ENST00000424478 MBD4O95243 580 aa16.2■□□□□ 0.18
PRPF39-202ENST00000424478 GRIPAP1Q4V328 841 aa16.2■□□□□ 0.18
PRPF39-202ENST00000424478 LCORLQ8N3X6 602 aa16.2■□□□□ 0.18
PRPF39-202ENST00000424478 MYH2Q9UKX2 1941 aa16.2■□□□□ 0.18
PRPF39-202ENST00000424478 ZMYM1Q5SVZ6 1142 aa16.2■□□□□ 0.18
PRPF39-202ENST00000424478 STRIP1Q5VSL9 837 aa16.2■□□□□ 0.18
PRPF39-202ENST00000424478 SGSM2O43147 1006 aa16.19■□□□□ 0.18
PRPF39-202ENST00000424478 EGFRP00533 1210 aa16.19■□□□□ 0.18
PRPF39-202ENST00000424478 RBM5P52756 815 aaKnown RBP eCLIP16.19■□□□□ 0.18
PRPF39-202ENST00000424478 LTBP3Q9NS15 1303 aa16.19■□□□□ 0.18
PRPF39-202ENST00000424478 CACNB3P54284 484 aa16.18■□□□□ 0.18
PRPF39-202ENST00000424478 RBM26Q5T8P6 1007 aaKnown RBP16.18■□□□□ 0.18
PRPF39-202ENST00000424478 CASC1Q6TDU7 716 aa16.18■□□□□ 0.18
PRPF39-202ENST00000424478 SMIM22K7EJ46 135 aa16.18■□□□□ 0.18
PRPF39-202ENST00000424478 GPAA1O43292 621 aa16.18■□□□□ 0.18
PRPF39-202ENST00000424478 DDNO94850 711 aaPredicted RBP16.18■□□□□ 0.18
PRPF39-202ENST00000424478 CIAPIN1Q6FI81 312 aa16.18■□□□□ 0.18
PRPF39-202ENST00000424478 STK11IPQ8N1F8 1099 aa16.18■□□□□ 0.18
PRPF39-202ENST00000424478 SDR42E1Q8WUS8 393 aa16.18■□□□□ 0.18
PRPF39-202ENST00000424478 APPBP2Q92624 585 aa16.18■□□□□ 0.18
PRPF39-202ENST00000424478 EVX2Q03828 476 aa16.18■□□□□ 0.18
PRPF39-202ENST00000424478 MCMDC2Q4G0Z9 681 aa16.17■□□□□ 0.18
PRPF39-202ENST00000424478 RSBN1LQ6PCB5 846 aaPredicted RBP16.17■□□□□ 0.18
PRPF39-202ENST00000424478 SALL1Q9NSC2 1324 aa16.17■□□□□ 0.18
PRPF39-202ENST00000424478 PDS5AQ29RF7 1337 aaKnown RBP16.16■□□□□ 0.18
PRPF39-202ENST00000424478 FZD9O00144 591 aa16.16■□□□□ 0.18
PRPF39-202ENST00000424478 FOXP2O15409 715 aa16.16■□□□□ 0.18
PRPF39-202ENST00000424478 TBC1D22AQ8WUA7 517 aa16.16■□□□□ 0.18
PRPF39-202ENST00000424478 AIDAQ96BJ3 306 aa16.16■□□□□ 0.18
PRPF39-202ENST00000424478 TAF6LQ9Y6J9 622 aa16.16■□□□□ 0.18
PRPF39-202ENST00000424478 VIL1P09327 827 aaKnown RBP16.16■□□□□ 0.18
PRPF39-202ENST00000424478 GMPSP49915 693 aaPredicted RBP16.16■□□□□ 0.18
PRPF39-202ENST00000424478 UBE3CQ15386 1083 aa16.16■□□□□ 0.18
PRPF39-202ENST00000424478 DAGLAQ9Y4D2 1042 aa16.16■□□□□ 0.18
PRPF39-202ENST00000424478 APPP05067 770 aa16.16■□□□□ 0.18
PRPF39-202ENST00000424478 EIF6P56537 245 aaKnown RBP16.16■□□□□ 0.18
PRPF39-202ENST00000424478 SH3RF3Q8TEJ3 882 aaPredicted RBP16.16■□□□□ 0.18
PRPF39-202ENST00000424478 BTDP43251 543 aa16.15■□□□□ 0.18
PRPF39-202ENST00000424478 SPTY2D1Q68D10 685 aaPredicted RBP16.15■□□□□ 0.18
PRPF39-202ENST00000424478 ZGPATQ8N5A5 531 aaKnown RBP16.15■□□□□ 0.18
PRPF39-202ENST00000424478 CCDC171Q6TFL3 1326 aa16.15■□□□□ 0.18
PRPF39-202ENST00000424478 MAGEB6P1A0A0J9YX57 407 aa16.15■□□□□ 0.18
PRPF39-202ENST00000424478 ZSCAN25Q6NSZ9 544 aa16.15■□□□□ 0.18
PRPF39-202ENST00000424478 SAMD7Q7Z3H4 446 aa16.15■□□□□ 0.18
PRPF39-202ENST00000424478 TIAM2Q8IVF5 1701 aa16.15■□□□□ 0.18
PRPF39-202ENST00000424478 ZFYP08048 801 aaPredicted RBP16.14■□□□□ 0.17
PRPF39-202ENST00000424478 CRKP46108 304 aa16.14■□□□□ 0.17
PRPF39-202ENST00000424478 RIOK1Q9BRS2 568 aaKnown RBP16.14■□□□□ 0.17
PRPF39-202ENST00000424478 LSG1Q9H089 658 aaKnown RBP16.14■□□□□ 0.17
PRPF39-202ENST00000424478 PSME4Q14997 1843 aa16.14■□□□□ 0.17
PRPF39-202ENST00000424478 DICER1Q9UPY3 1922 aaKnown RBP16.14■□□□□ 0.17
PRPF39-202ENST00000424478 COL9A3Q14050 684 aaPredicted RBP16.14■□□□□ 0.17
PRPF39-202ENST00000424478 PALD1Q9ULE6 856 aa16.14■□□□□ 0.17
PRPF39-202ENST00000424478 MROH7-TTC4A0A0A0MT08 1334 aa16.14■□□□□ 0.17
PRPF39-202ENST00000424478 ASTN2O75129 1339 aaPredicted RBP16.14■□□□□ 0.17
PRPF39-202ENST00000424478 CYP2D7A0A087X1C5 515 aa16.14■□□□□ 0.17
PRPF39-202ENST00000424478 HIP1O00291 1037 aa16.14■□□□□ 0.17
PRPF39-202ENST00000424478 SLURP2P0DP57 97 aa16.14■□□□□ 0.17
PRPF39-202ENST00000424478 HAND2P61296 217 aa16.14■□□□□ 0.17
PRPF39-202ENST00000424478 RUFY2Q8WXA3 655 aa16.14■□□□□ 0.17
PRPF39-202ENST00000424478 STRBPQ96SI9 672 aaKnown RBP16.14■□□□□ 0.17
PRPF39-202ENST00000424478 GMLQ99445 158 aa16.14■□□□□ 0.17
PRPF39-202ENST00000424478 BAZ2AQ9UIF9 1905 aaKnown RBP16.13■□□□□ 0.17
PRPF39-202ENST00000424478 CLRN2A0PK11 232 aa16.13■□□□□ 0.17
PRPF39-202ENST00000424478 HSPD1P10809 573 aaKnown RBP16.13■□□□□ 0.17
PRPF39-202ENST00000424478 TBC1D10BQ4KMP7 808 aaPredicted RBP16.13■□□□□ 0.17
PRPF39-202ENST00000424478 PRMT6Q96LA8 375 aaPredicted RBP16.13■□□□□ 0.17
PRPF39-202ENST00000424478 TSHZ2Q9NRE2 1034 aa16.13■□□□□ 0.17
PRPF39-202ENST00000424478 HELLSQ9NRZ9 838 aa16.13■□□□□ 0.17
PRPF39-202ENST00000424478 SLC4A4Q9Y6R1 1079 aa16.13■□□□□ 0.17
PRPF39-202ENST00000424478 PICALMQ13492 652 aa16.13■□□□□ 0.17
PRPF39-202ENST00000424478 CFAP100Q494V2 611 aa16.13■□□□□ 0.17
PRPF39-202ENST00000424478 VPS33BQ9H267 617 aa16.13■□□□□ 0.17
PRPF39-202ENST00000424478 KIAA1211Q6ZU35 1233 aa16.12■□□□□ 0.17
PRPF39-202ENST00000424478 MICALL2Q8IY33 904 aa16.12■□□□□ 0.17
PRPF39-202ENST00000424478 ZNF526Q8TF50 670 aaPredicted RBP16.12■□□□□ 0.17
PRPF39-202ENST00000424478 TDRD3Q9H7E2 651 aaKnown RBP16.12■□□□□ 0.17
PRPF39-202ENST00000424478 EPB41L4AQ9HCS5 686 aaPredicted RBP16.12■□□□□ 0.17
PRPF39-202ENST00000424478 GRIN3BO60391 1043 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms