RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 CAMTA2O94983 1202 aa13.98□□□□□ -0.17
PTPRN-204ENST00000423636 C8orf76Q96K31 380 aa13.98□□□□□ -0.17
PTPRN-204ENST00000423636 NAPBQ9H115 298 aa13.98□□□□□ -0.17
PTPRN-204ENST00000423636 EPB41L4AQ9HCS5 686 aaPredicted RBP13.98□□□□□ -0.17
PTPRN-204ENST00000423636 SLC4A4Q9Y6R1 1079 aa13.98□□□□□ -0.17
PTPRN-204ENST00000423636 SPATA31A1Q5TZJ5 1347 aa13.98□□□□□ -0.17
PTPRN-204ENST00000423636 MCM5P33992 734 aa13.98□□□□□ -0.17
PTPRN-204ENST00000423636 IL6STP40189 918 aaPredicted RBP13.98□□□□□ -0.17
PTPRN-204ENST00000423636 GNL2Q13823 731 aaKnown RBP13.98□□□□□ -0.17
PTPRN-204ENST00000423636 TBC1D9BQ66K14 1250 aa13.98□□□□□ -0.17
PTPRN-204ENST00000423636 ZNF34Q8IZ26 560 aa13.98□□□□□ -0.17
PTPRN-204ENST00000423636 NCOA7Q8NI08 942 aa13.98□□□□□ -0.17
PTPRN-204ENST00000423636 HPS5Q9UPZ3 1129 aa13.98□□□□□ -0.17
PTPRN-204ENST00000423636 MRVI1Q9Y6F6 885 aa13.98□□□□□ -0.17
PTPRN-204ENST00000423636 GUCY1A2P33402 732 aa13.97□□□□□ -0.17
PTPRN-204ENST00000423636 IGHMBP2P38935 993 aaKnown RBP13.97□□□□□ -0.17
PTPRN-204ENST00000423636 LRMPQ12912 555 aa13.97□□□□□ -0.17
PTPRN-204ENST00000423636 TSGA10IPQ3SY00 556 aa13.97□□□□□ -0.17
PTPRN-204ENST00000423636 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.97□□□□□ -0.17
PTPRN-204ENST00000423636 KCNJ14Q9UNX9 436 aa13.97□□□□□ -0.17
PTPRN-204ENST00000423636 GNPATO15228 680 aa13.97□□□□□ -0.17
PTPRN-204ENST00000423636 PUM3Q15397 648 aaKnown RBP13.97□□□□□ -0.17
PTPRN-204ENST00000423636 VSIG10Q8N0Z9 540 aa13.97□□□□□ -0.17
PTPRN-204ENST00000423636 FSIP1Q8NA03 581 aa13.97□□□□□ -0.17
PTPRN-204ENST00000423636 GPR108Q9NPR9 543 aa13.97□□□□□ -0.17
PTPRN-204ENST00000423636 ZSWIM5Q9P217 1185 aa13.97□□□□□ -0.17
PTPRN-204ENST00000423636 TNS2Q63HR2 1409 aa13.97□□□□□ -0.17
PTPRN-204ENST00000423636 CYP7A1P22680 504 aa13.97□□□□□ -0.17
PTPRN-204ENST00000423636 TRIM28Q13263 835 aaKnown RBP13.97□□□□□ -0.17
PTPRN-204ENST00000423636 ARID5BQ14865 1188 aa13.97□□□□□ -0.17
PTPRN-204ENST00000423636 IFIT3O14879 490 aaKnown RBP13.96□□□□□ -0.17
PTPRN-204ENST00000423636 TMEM67Q5HYA8 995 aa13.96□□□□□ -0.17
PTPRN-204ENST00000423636 C11orf57Q6ZUT1 292 aaPredicted RBP13.96□□□□□ -0.17
PTPRN-204ENST00000423636 PDLIM2Q96JY6 352 aa13.96□□□□□ -0.17
PTPRN-204ENST00000423636 SLC26A6Q9BXS9 759 aa13.96□□□□□ -0.17
PTPRN-204ENST00000423636 CARMIL3Q8ND23 1372 aa13.96□□□□□ -0.17
PTPRN-204ENST00000423636 CCDC192P0DO97 292 aa13.96□□□□□ -0.18
PTPRN-204ENST00000423636 TXNRD3Q86VQ6 643 aa13.96□□□□□ -0.18
PTPRN-204ENST00000423636 MB21D2Q8IYB1 491 aaPredicted RBP13.96□□□□□ -0.18
PTPRN-204ENST00000423636 CLIC6Q96NY7 704 aa13.96□□□□□ -0.18
PTPRN-204ENST00000423636 CBX8Q9HC52 389 aa13.96□□□□□ -0.18
PTPRN-204ENST00000423636 SLC5A1P13866 664 aa13.95□□□□□ -0.18
PTPRN-204ENST00000423636 TMEM87AQ8NBN3 555 aa13.95□□□□□ -0.18
PTPRN-204ENST00000423636 LPIN2Q92539 896 aa13.95□□□□□ -0.18
PTPRN-204ENST00000423636 TRIM5Q9C035 493 aa13.95□□□□□ -0.18
PTPRN-204ENST00000423636 SLIT2O94813 1529 aa13.95□□□□□ -0.18
PTPRN-204ENST00000423636 TJP1Q07157 1748 aa13.95□□□□□ -0.18
PTPRN-204ENST00000423636 IFNL3Q8IZI9 196 aa13.95□□□□□ -0.18
PTPRN-204ENST00000423636 STRBPQ96SI9 672 aaKnown RBP13.95□□□□□ -0.18
PTPRN-204ENST00000423636 SCAND2PQ9GZW5 306 aaPredicted RBP13.95□□□□□ -0.18
PTPRN-204ENST00000423636 NMT2O60551 498 aa13.95□□□□□ -0.18
PTPRN-204ENST00000423636 PTGS1P23219 599 aa13.95□□□□□ -0.18
PTPRN-204ENST00000423636 METAP2P50579 478 aaKnown RBP eCLIP13.95□□□□□ -0.18
PTPRN-204ENST00000423636 STK38Q15208 465 aa13.95□□□□□ -0.18
PTPRN-204ENST00000423636 SASS6Q6UVJ0 657 aa13.95□□□□□ -0.18
PTPRN-204ENST00000423636 SDF4Q9BRK5 362 aa13.95□□□□□ -0.18
PTPRN-204ENST00000423636 CTNNA3Q9UI47 895 aa13.94□□□□□ -0.18
PTPRN-204ENST00000423636 PCDHA7Q9UN72 937 aa13.94□□□□□ -0.18
PTPRN-204ENST00000423636 ZKSCAN5Q9Y2L8 839 aa13.94□□□□□ -0.18
PTPRN-204ENST00000423636 COL4A1P02462 1669 aa13.94□□□□□ -0.18
PTPRN-204ENST00000423636 FUCA2Q9BTY2 467 aa13.94□□□□□ -0.18
PTPRN-204ENST00000423636 PYCARDQ9ULZ3 195 aa13.94□□□□□ -0.18
PTPRN-204ENST00000423636 HMGB1P09429 215 aaKnown RBP13.93□□□□□ -0.18
PTPRN-204ENST00000423636 ZNF165P49910 485 aa13.93□□□□□ -0.18
PTPRN-204ENST00000423636 NDUFA8P51970 172 aa13.93□□□□□ -0.18
PTPRN-204ENST00000423636 CCDC152Q4G0S7 254 aa13.93□□□□□ -0.18
PTPRN-204ENST00000423636 SMARCC2Q8TAQ2 1214 aa13.93□□□□□ -0.18
PTPRN-204ENST00000423636 ALG1Q9BT22 464 aa13.93□□□□□ -0.18
PTPRN-204ENST00000423636 NOL7Q9UMY1 257 aaKnown RBP13.93□□□□□ -0.18
PTPRN-204ENST00000423636 RANBP6O60518 1105 aaKnown RBP13.93□□□□□ -0.18
PTPRN-204ENST00000423636 NTSR2O95665 410 aa13.93□□□□□ -0.18
PTPRN-204ENST00000423636 MAP3K12Q12852 859 aa13.93□□□□□ -0.18
PTPRN-204ENST00000423636 CSPP1Q1MSJ5 1256 aa13.93□□□□□ -0.18
PTPRN-204ENST00000423636 FAM13BQ9NYF5 915 aa13.93□□□□□ -0.18
PTPRN-204ENST00000423636 SHANK3Q9BYB0 1731 aa13.93□□□□□ -0.18
PTPRN-204ENST00000423636 PARP4Q9UKK3 1724 aaKnown RBP13.93□□□□□ -0.18
PTPRN-204ENST00000423636 JCADQ9P266 1359 aa13.93□□□□□ -0.18
PTPRN-204ENST00000423636 ITGB4P16144 1822 aa13.93□□□□□ -0.18
PTPRN-204ENST00000423636 FAM47AQ5JRC9 791 aa13.92□□□□□ -0.18
PTPRN-204ENST00000423636 PDILTQ8N807 584 aa13.92□□□□□ -0.18
PTPRN-204ENST00000423636 AATFQ9NY61 560 aaKnown RBP eCLIP13.92□□□□□ -0.18
PTPRN-204ENST00000423636 GOLGA8AA7E2F4 631 aa13.92□□□□□ -0.18
PTPRN-204ENST00000423636 GSG1L2A8MUP6 293 aa13.92□□□□□ -0.18
PTPRN-204ENST00000423636 FILIP1Q7Z7B0 1213 aa13.92□□□□□ -0.18
PTPRN-204ENST00000423636 PLA2G12BQ9BX93 195 aa13.92□□□□□ -0.18
PTPRN-204ENST00000423636 CCDC39Q9UFE4 941 aa13.92□□□□□ -0.18
PTPRN-204ENST00000423636 CYP2D6P10635 497 aa13.92□□□□□ -0.18
PTPRN-204ENST00000423636 NBPF5PQ86XG9 351 aaPredicted RBP13.92□□□□□ -0.18
PTPRN-204ENST00000423636 MYH14Q7Z406 1995 aaKnown RBP13.91□□□□□ -0.18
PTPRN-204ENST00000423636 TCRBV5S4A2TA0A5A2 114 aa13.91□□□□□ -0.18
PTPRN-204ENST00000423636 PRDX5P30044 214 aa13.91□□□□□ -0.18
PTPRN-204ENST00000423636 CCDC186Q7Z3E2 898 aa13.91□□□□□ -0.18
PTPRN-204ENST00000423636 ANGEL1Q9UNK9 670 aaKnown RBP13.91□□□□□ -0.18
PTPRN-204ENST00000423636 FAM205CA6NFA0 338 aa13.91□□□□□ -0.18
PTPRN-204ENST00000423636 ZFYP08048 801 aaPredicted RBP13.91□□□□□ -0.18
PTPRN-204ENST00000423636 NR5A1Q13285 461 aa13.91□□□□□ -0.18
PTPRN-204ENST00000423636 APOA5Q6Q788 366 aa13.91□□□□□ -0.18
PTPRN-204ENST00000423636 SYNE3Q6ZMZ3 975 aa13.91□□□□□ -0.18
PTPRN-204ENST00000423636 CCDC73Q6ZRK6 1079 aa13.91□□□□□ -0.18
PTPRN-204ENST00000423636 ANKRD18AQ8IVF6 992 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms