RNA–Protein interactions for RNA: ENST00000416728.3

PAF1-202, Transcript of PAF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 2

Gene PAF1, Length 1,383 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PAF1-202ENST00000416728 KLHDC4Q8TBB5 520 aa18.11■□□□□ 0.49
PAF1-202ENST00000416728 TBC1D22AQ8WUA7 517 aa18.11■□□□□ 0.49
PAF1-202ENST00000416728 USP44Q9H0E7 712 aa18.11■□□□□ 0.49
PAF1-202ENST00000416728 TCP10L2B9ZVM9 353 aa18.1■□□□□ 0.49
PAF1-202ENST00000416728 TNNI2P48788 182 aa18.1■□□□□ 0.49
PAF1-202ENST00000416728 FBXO46Q6PJ61 603 aaPredicted RBP18.1■□□□□ 0.49
PAF1-202ENST00000416728 ECM29Q5VYK3 1845 aa18.1■□□□□ 0.49
PAF1-202ENST00000416728 IGF2BP3O00425 579 aaKnown RBP eCLIP18.09■□□□□ 0.49
PAF1-202ENST00000416728 IFIT1P09914 478 aaKnown RBP18.09■□□□□ 0.49
PAF1-202ENST00000416728 GRIK5Q16478 980 aa18.09■□□□□ 0.49
PAF1-202ENST00000416728 ALDH1L2Q3SY69 923 aa18.09■□□□□ 0.49
PAF1-202ENST00000416728 SMC4Q9NTJ3 1288 aa18.09■□□□□ 0.49
PAF1-202ENST00000416728 BCAMP50895 628 aa18.08■□□□□ 0.49
PAF1-202ENST00000416728 HDLBPQ00341 1268 aaKnown RBP18.08■□□□□ 0.49
PAF1-202ENST00000416728 PUM3Q15397 648 aaKnown RBP18.08■□□□□ 0.49
PAF1-202ENST00000416728 OTUD7BQ6GQQ9 843 aa18.08■□□□□ 0.49
PAF1-202ENST00000416728 TEKT1Q969V4 418 aa18.08■□□□□ 0.49
PAF1-202ENST00000416728 TEPSINQ96N21 525 aa18.08■□□□□ 0.49
PAF1-202ENST00000416728 TMEM39BQ9GZU3 492 aa18.08■□□□□ 0.49
PAF1-202ENST00000416728 GJA5P36382 358 aa18.07■□□□□ 0.48
PAF1-202ENST00000416728 CDAN1Q8IWY9 1227 aa18.07■□□□□ 0.48
PAF1-202ENST00000416728 CDCA7LQ96GN5 454 aa18.07■□□□□ 0.48
PAF1-202ENST00000416728 ELP3Q9H9T3 547 aa18.07■□□□□ 0.48
PAF1-202ENST00000416728 KIF16BQ96L93 1317 aa18.07■□□□□ 0.48
PAF1-202ENST00000416728 EYA2O00167 538 aa18.06■□□□□ 0.48
PAF1-202ENST00000416728 OPTNQ96CV9 577 aa18.06■□□□□ 0.48
PAF1-202ENST00000416728 TMOD2Q9NZR1 351 aa18.06■□□□□ 0.48
PAF1-202ENST00000416728 MAST3O60307 1309 aa18.06■□□□□ 0.48
PAF1-202ENST00000416728 ARAP2Q8WZ64 1704 aa18.06■□□□□ 0.48
PAF1-202ENST00000416728 SLC5A1P13866 664 aa18.05■□□□□ 0.48
PAF1-202ENST00000416728 FGFR2P21802 821 aa18.05■□□□□ 0.48
PAF1-202ENST00000416728 RFX5P48382 616 aaPredicted RBP18.05■□□□□ 0.48
PAF1-202ENST00000416728 SUGT1Q9Y2Z0 365 aa18.05■□□□□ 0.48
PAF1-202ENST00000416728 UBTFL1P0CB47 393 aaPredicted RBP18.04■□□□□ 0.48
PAF1-202ENST00000416728 CACNB3P54284 484 aa18.04■□□□□ 0.48
PAF1-202ENST00000416728 CRHR2Q13324 411 aa18.04■□□□□ 0.48
PAF1-202ENST00000416728 VGLL4Q14135 290 aa18.04■□□□□ 0.48
PAF1-202ENST00000416728 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.04■□□□□ 0.48
PAF1-202ENST00000416728 LPIN2Q92539 896 aa18.04■□□□□ 0.48
PAF1-202ENST00000416728 ZDHHC15Q96MV8 337 aa18.04■□□□□ 0.48
PAF1-202ENST00000416728 MRIQ9BWK5 157 aa18.04■□□□□ 0.48
PAF1-202ENST00000416728 TRIM17Q9Y577 477 aa18.04■□□□□ 0.48
PAF1-202ENST00000416728 CSADQ9Y600 493 aa18.04■□□□□ 0.48
PAF1-202ENST00000416728 TESPA1A2RU30 521 aaPredicted RBP18.04■□□□□ 0.48
PAF1-202ENST00000416728 MAP3K9P80192 1104 aa18.04■□□□□ 0.48
PAF1-202ENST00000416728 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.04■□□□□ 0.48
PAF1-202ENST00000416728 PTPN18Q99952 460 aa18.04■□□□□ 0.48
PAF1-202ENST00000416728 CT47B1P0C2W7 299 aaPredicted RBP18.03■□□□□ 0.48
PAF1-202ENST00000416728 OTOP1Q7RTM1 612 aa18.03■□□□□ 0.48
PAF1-202ENST00000416728 ERO1AQ96HE7 468 aa18.03■□□□□ 0.48
PAF1-202ENST00000416728 FKBP1CQ5VVH2 108 aa18.02■□□□□ 0.47
PAF1-202ENST00000416728 APOBEC3HQ6NTF7 200 aaKnown RBP18.02■□□□□ 0.47
PAF1-202ENST00000416728 HHIPL2Q6UWX4 724 aa18.02■□□□□ 0.47
PAF1-202ENST00000416728 ATG9AQ7Z3C6 839 aa18.02■□□□□ 0.47
PAF1-202ENST00000416728 FAM83AQ86UY5 434 aa18.02■□□□□ 0.47
PAF1-202ENST00000416728 TRMT2AQ8IZ69 625 aaKnown RBP18.02■□□□□ 0.47
PAF1-202ENST00000416728 WDR66Q8TBY9 1149 aa18.02■□□□□ 0.47
PAF1-202ENST00000416728 CNKSR2Q8WXI2 1034 aa18.02■□□□□ 0.47
PAF1-202ENST00000416728 HOOK2Q96ED9 719 aa18.02■□□□□ 0.47
PAF1-202ENST00000416728 MS4A4AQ96JQ5 239 aa18.02■□□□□ 0.47
PAF1-202ENST00000416728 FBXO3Q9UK99 471 aa18.02■□□□□ 0.47
PAF1-202ENST00000416728 SLC34A2O95436 690 aa18.01■□□□□ 0.47
PAF1-202ENST00000416728 GTF2A2P52657 109 aa18.01■□□□□ 0.47
PAF1-202ENST00000416728 OTUD5Q96G74 571 aa18.01■□□□□ 0.47
PAF1-202ENST00000416728 SIL1Q9H173 461 aa18.01■□□□□ 0.47
PAF1-202ENST00000416728 NOB1Q9ULX3 412 aaKnown RBP18.01■□□□□ 0.47
PAF1-202ENST00000416728 HDAC5Q9UQL6 1122 aa18.01■□□□□ 0.47
PAF1-202ENST00000416728 CCL15-CCL14A0A0B4J2E2 113 aa18■□□□□ 0.47
PAF1-202ENST00000416728 CIAO1O76071 339 aa18■□□□□ 0.47
PAF1-202ENST00000416728 SP3Q02447 781 aa18■□□□□ 0.47
PAF1-202ENST00000416728 CCL15Q16663 113 aa18■□□□□ 0.47
PAF1-202ENST00000416728 ATP2B3Q16720 1220 aa18■□□□□ 0.47
PAF1-202ENST00000416728 CD99L2Q8TCZ2 262 aa18■□□□□ 0.47
PAF1-202ENST00000416728 BRI3BPQ8WY22 251 aa18■□□□□ 0.47
PAF1-202ENST00000416728 WRNIP1Q96S55 665 aa18■□□□□ 0.47
PAF1-202ENST00000416728 API5Q9BZZ5 524 aaKnown RBP18■□□□□ 0.47
PAF1-202ENST00000416728 CEP126Q9P2H0 1117 aa18■□□□□ 0.47
PAF1-202ENST00000416728 LAMB1P07942 1786 aa17.99■□□□□ 0.47
PAF1-202ENST00000416728 SPDYE5A6NIY4 337 aa17.99■□□□□ 0.47
PAF1-202ENST00000416728 DCAF15Q66K64 600 aa17.99■□□□□ 0.47
PAF1-202ENST00000416728 EFCC1Q9HA90 598 aa17.99■□□□□ 0.47
PAF1-202ENST00000416728 GNL3LQ9NVN8 582 aaKnown RBP17.99■□□□□ 0.47
PAF1-202ENST00000416728 OTOFQ9HC10 1997 aa17.99■□□□□ 0.47
PAF1-202ENST00000416728 TAF1CQ15572 869 aaPredicted RBP17.98■□□□□ 0.47
PAF1-202ENST00000416728 ZFYVE28Q9HCC9 887 aa17.98■□□□□ 0.47
PAF1-202ENST00000416728 PTPN22Q9Y2R2 807 aa17.98■□□□□ 0.47
PAF1-202ENST00000416728 LRRFIP2Q9Y608 721 aaKnown RBP17.98■□□□□ 0.47
PAF1-202ENST00000416728 SNCAIPQ9Y6H5 919 aa17.98■□□□□ 0.47
PAF1-202ENST00000416728 RPAP1Q9BWH6 1393 aaPredicted RBP17.98■□□□□ 0.47
PAF1-202ENST00000416728 IL15P40933 162 aaPredicted RBP17.97■□□□□ 0.47
PAF1-202ENST00000416728 ERO1BQ86YB8 467 aa17.97■□□□□ 0.47
PAF1-202ENST00000416728 WDHD1O75717 1129 aaPredicted RBP17.96■□□□□ 0.47
PAF1-202ENST00000416728 CETPP11597 493 aa17.96■□□□□ 0.47
PAF1-202ENST00000416728 PRDX5P30044 214 aa17.96■□□□□ 0.47
PAF1-202ENST00000416728 DIXDC1Q155Q3 683 aa17.96■□□□□ 0.47
PAF1-202ENST00000416728 PRPF38BQ5VTL8 546 aaKnown RBP17.96■□□□□ 0.47
PAF1-202ENST00000416728 INTS3Q68E01 1043 aaKnown RBP17.96■□□□□ 0.47
PAF1-202ENST00000416728 FAM43AQ8N2R8 423 aa17.96■□□□□ 0.47
PAF1-202ENST00000416728 ZKSCAN4Q969J2 545 aaPredicted RBP17.96■□□□□ 0.47
PAF1-202ENST00000416728 DAGLAQ9Y4D2 1042 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms