RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 SAMM50Q9Y512 469 aa7.39□□□□□ -1.23
VPS54-204ENST00000416400 DLL1O00548 723 aa7.38□□□□□ -1.23
VPS54-204ENST00000416400 GDF11O95390 407 aa7.38□□□□□ -1.23
VPS54-204ENST00000416400 B3GALT4O96024 378 aa7.38□□□□□ -1.23
VPS54-204ENST00000416400 CYP11A1P05108 521 aa7.38□□□□□ -1.23
VPS54-204ENST00000416400 ZNF157P51786 506 aaPredicted RBP7.38□□□□□ -1.23
VPS54-204ENST00000416400 NLRP12P59046 1061 aa7.38□□□□□ -1.23
VPS54-204ENST00000416400 ZC3H6P61129 1189 aaKnown RBP7.38□□□□□ -1.23
VPS54-204ENST00000416400 DUOXA2Q1HG44 320 aa7.38□□□□□ -1.23
VPS54-204ENST00000416400 ZNF423Q2M1K9 1284 aa7.38□□□□□ -1.23
VPS54-204ENST00000416400 HP1BP3Q5SSJ5 553 aaPredicted RBP7.38□□□□□ -1.23
VPS54-204ENST00000416400 ILDR2Q71H61 639 aa7.38□□□□□ -1.23
VPS54-204ENST00000416400 DCAF5Q96JK2 942 aa7.38□□□□□ -1.23
VPS54-204ENST00000416400 C8orf37Q96NL8 207 aa7.38□□□□□ -1.23
VPS54-204ENST00000416400 USP26Q9BXU7 913 aa7.38□□□□□ -1.23
VPS54-204ENST00000416400 MRPL18Q9H0U6 180 aaKnown RBP7.38□□□□□ -1.23
VPS54-204ENST00000416400 FANCCQ00597 558 aa7.37□□□□□ -1.23
VPS54-204ENST00000416400 AP3B2Q13367 1082 aa7.37□□□□□ -1.23
VPS54-204ENST00000416400 TPTE2Q6XPS3 522 aa7.37□□□□□ -1.23
VPS54-204ENST00000416400 GALNT11Q8NCW6 608 aa7.37□□□□□ -1.23
VPS54-204ENST00000416400 RNF34Q969K3 372 aa7.37□□□□□ -1.23
VPS54-204ENST00000416400 CORO1BQ9BR76 489 aa7.37□□□□□ -1.23
VPS54-204ENST00000416400 USP35Q9P2H5 1018 aa7.37□□□□□ -1.23
VPS54-204ENST00000416400 ZNF76P36508 570 aa7.36□□□□□ -1.23
VPS54-204ENST00000416400 TAF1CQ15572 869 aaPredicted RBP7.36□□□□□ -1.23
VPS54-204ENST00000416400 C9orf131Q5VYM1 1079 aa7.36□□□□□ -1.23
VPS54-204ENST00000416400 C3orf58Q8NDZ4 430 aa7.36□□□□□ -1.23
VPS54-204ENST00000416400 LENG1Q96BZ8 264 aaPredicted RBP7.36□□□□□ -1.23
VPS54-204ENST00000416400 CTSHP09668 335 aa7.35□□□□□ -1.23
VPS54-204ENST00000416400 LMNB1P20700 586 aa7.35□□□□□ -1.23
VPS54-204ENST00000416400 POU4F3Q15319 338 aa7.35□□□□□ -1.23
VPS54-204ENST00000416400 CCDC85BQ15834 202 aaPredicted RBP7.35□□□□□ -1.23
VPS54-204ENST00000416400 HGSNATQ68CP4 663 aa7.35□□□□□ -1.23
VPS54-204ENST00000416400 SHISA2Q6UWI4 295 aa7.35□□□□□ -1.23
VPS54-204ENST00000416400 ACAD11Q709F0 780 aa7.35□□□□□ -1.23
VPS54-204ENST00000416400 NT5DC4Q86YG4 428 aa7.35□□□□□ -1.23
VPS54-204ENST00000416400 EMILIN2Q9BXX0 1053 aa7.35□□□□□ -1.23
VPS54-204ENST00000416400 DDX3YO15523 660 aaKnown RBP7.34□□□□□ -1.23
VPS54-204ENST00000416400 FBXO24O75426 580 aa7.34□□□□□ -1.23
VPS54-204ENST00000416400 SELPP16109 830 aa7.34□□□□□ -1.23
VPS54-204ENST00000416400 FAAP100Q0VG06 881 aa7.34□□□□□ -1.23
VPS54-204ENST00000416400 FOXD4L6Q3SYB3 417 aaPredicted RBP7.34□□□□□ -1.23
VPS54-204ENST00000416400 FOXD4L3Q6VB84 417 aaPredicted RBP7.34□□□□□ -1.23
VPS54-204ENST00000416400 SV2BQ7L1I2 683 aa7.34□□□□□ -1.23
VPS54-204ENST00000416400 METTL16Q86W50 562 aaKnown RBP7.34□□□□□ -1.23
VPS54-204ENST00000416400 CBX8Q9HC52 389 aa7.34□□□□□ -1.23
VPS54-204ENST00000416400 KRBA1A5PL33 1030 aa7.33□□□□□ -1.24
VPS54-204ENST00000416400 MAOBP27338 520 aa7.33□□□□□ -1.24
VPS54-204ENST00000416400 PDE3AQ14432 1141 aa7.33□□□□□ -1.24
VPS54-204ENST00000416400 NAALADL2Q58DX5 795 aa7.33□□□□□ -1.24
VPS54-204ENST00000416400 DIEXFQ68CQ4 756 aaKnown RBP7.33□□□□□ -1.24
VPS54-204ENST00000416400 ANKRD24Q8TF21 1146 aa7.33□□□□□ -1.24
VPS54-204ENST00000416400 NECAB3Q96P71 396 aaPredicted RBP7.33□□□□□ -1.24
VPS54-204ENST00000416400 RUSC1Q9BVN2 902 aa7.33□□□□□ -1.24
VPS54-204ENST00000416400 AKTIPQ9H8T0 292 aa7.33□□□□□ -1.24
VPS54-204ENST00000416400 RAD18Q9NS91 495 aa7.33□□□□□ -1.24
VPS54-204ENST00000416400 KCNK4Q9NYG8 393 aa7.33□□□□□ -1.24
VPS54-204ENST00000416400 RLBP1P12271 317 aa7.32□□□□□ -1.24
VPS54-204ENST00000416400 NME2P22392 152 aa7.32□□□□□ -1.24
VPS54-204ENST00000416400 ST13P50502 369 aaKnown RBP7.32□□□□□ -1.24
VPS54-204ENST00000416400 RAD51AP2Q09MP3 1159 aa7.32□□□□□ -1.24
VPS54-204ENST00000416400 LRRC14Q15048 493 aa7.32□□□□□ -1.24
VPS54-204ENST00000416400 SULF2Q8IWU5 870 aa7.32□□□□□ -1.24
VPS54-204ENST00000416400 TMEM130Q8N3G9 435 aa7.32□□□□□ -1.24
VPS54-204ENST00000416400 UBASH3BQ8TF42 649 aa7.32□□□□□ -1.24
VPS54-204ENST00000416400 RNF208Q9H0X6 261 aa7.32□□□□□ -1.24
VPS54-204ENST00000416400 C1QTNF9BB2RNN3 333 aa7.31□□□□□ -1.24
VPS54-204ENST00000416400 SART1O43290 800 aaKnown RBP7.31□□□□□ -1.24
VPS54-204ENST00000416400 ADAM11O75078 769 aa7.31□□□□□ -1.24
VPS54-204ENST00000416400 ARNTP27540 789 aa7.31□□□□□ -1.24
VPS54-204ENST00000416400 MEI1Q5TIA1 1274 aa7.31□□□□□ -1.24
VPS54-204ENST00000416400 NUTM2GQ5VZR2 741 aa7.31□□□□□ -1.24
VPS54-204ENST00000416400 FDX2Q6P4F2 183 aa7.31□□□□□ -1.24
VPS54-204ENST00000416400 SREK1Q8WXA9 508 aaKnown RBP7.31□□□□□ -1.24
VPS54-204ENST00000416400 KCNB2Q92953 911 aa7.31□□□□□ -1.24
VPS54-204ENST00000416400 CEP41Q9BYV8 373 aa7.31□□□□□ -1.24
VPS54-204ENST00000416400 TGIF2Q9GZN2 237 aa7.31□□□□□ -1.24
VPS54-204ENST00000416400 CCSER2Q9H7U1 834 aa7.31□□□□□ -1.24
VPS54-204ENST00000416400 CYP4F12Q9HCS2 524 aa7.31□□□□□ -1.24
VPS54-204ENST00000416400 USP31Q70CQ4 1352 aa7.31□□□□□ -1.24
VPS54-204ENST00000416400 LOC100289279A0A1B0GTE1 492 aa7.3□□□□□ -1.24
VPS54-204ENST00000416400 F8W735 103 aaPredicted RBP7.3□□□□□ -1.24
VPS54-204ENST00000416400 GLB1P16278 677 aa7.3□□□□□ -1.24
VPS54-204ENST00000416400 GATA4P43694 442 aa7.3□□□□□ -1.24
VPS54-204ENST00000416400 IREB2P48200 963 aaKnown RBP7.3□□□□□ -1.24
VPS54-204ENST00000416400 EXOSC6Q5RKV6 272 aaKnown RBP7.3□□□□□ -1.24
VPS54-204ENST00000416400 HS2ST1Q7LGA3 356 aa7.3□□□□□ -1.24
VPS54-204ENST00000416400 CD163Q86VB7 1156 aa7.3□□□□□ -1.24
VPS54-204ENST00000416400 TXNRD3Q86VQ6 643 aa7.3□□□□□ -1.24
VPS54-204ENST00000416400 WFDC12Q8WWY7 111 aa7.3□□□□□ -1.24
VPS54-204ENST00000416400 NOC4LQ9BVI4 516 aaKnown RBP7.3□□□□□ -1.24
VPS54-204ENST00000416400 ENC1O14682 589 aa7.29□□□□□ -1.24
VPS54-204ENST00000416400 WISP1O95388 367 aa7.29□□□□□ -1.24
VPS54-204ENST00000416400 CELA3AP09093 270 aa7.29□□□□□ -1.24
VPS54-204ENST00000416400 GSTP1P09211 210 aaKnown RBP7.29□□□□□ -1.24
VPS54-204ENST00000416400 CHRNA4P43681 627 aa7.29□□□□□ -1.24
VPS54-204ENST00000416400 ADGRE1Q14246 886 aa7.29□□□□□ -1.24
VPS54-204ENST00000416400 MBTPS1Q14703 1052 aa7.29□□□□□ -1.24
VPS54-204ENST00000416400 KIAA1211Q6ZU35 1233 aa7.29□□□□□ -1.24
VPS54-204ENST00000416400 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms