RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 CDCA5Q96FF9 252 aa25.55■■□□□ 1.68
VSX1-204ENST00000409958 TLL2Q9Y6L7 1015 aa25.55■■□□□ 1.68
VSX1-204ENST00000409958 ZGPATQ8N5A5 531 aaKnown RBP25.54■■□□□ 1.68
VSX1-204ENST00000409958 TEKT1Q969V4 418 aa25.54■■□□□ 1.68
VSX1-204ENST00000409958 UQCRFS1P1P0C7P4 283 aa25.53■■□□□ 1.68
VSX1-204ENST00000409958 ARID4AP29374 1257 aaPredicted RBP25.53■■□□□ 1.68
VSX1-204ENST00000409958 DEFB115Q30KQ5 88 aa25.53■■□□□ 1.68
VSX1-204ENST00000409958 DBNDD2Q9BQY9 259 aa25.53■■□□□ 1.68
VSX1-204ENST00000409958 SCAF8Q9UPN6 1271 aaKnown RBP25.53■■□□□ 1.68
VSX1-204ENST00000409958 ECM29Q5VYK3 1845 aa25.53■■□□□ 1.68
VSX1-204ENST00000409958 SAPCD2Q86UD0 394 aa25.52■■□□□ 1.68
VSX1-204ENST00000409958 JMYQ8N9B5 988 aa25.52■■□□□ 1.68
VSX1-204ENST00000409958 AOX1Q06278 1338 aa25.51■■□□□ 1.67
VSX1-204ENST00000409958 CLRN2A0PK11 232 aa25.51■■□□□ 1.67
VSX1-204ENST00000409958 LDHBP07195 334 aaKnown RBP25.51■■□□□ 1.67
VSX1-204ENST00000409958 PRDX5P30044 214 aa25.51■■□□□ 1.67
VSX1-204ENST00000409958 CCDC158Q5M9N0 1113 aa25.51■■□□□ 1.67
VSX1-204ENST00000409958 HHIPL2Q6UWX4 724 aa25.51■■□□□ 1.67
VSX1-204ENST00000409958 RHPN1Q8TCX5 695 aa25.51■■□□□ 1.67
VSX1-204ENST00000409958 EAF2Q96CJ1 260 aaPredicted RBP25.51■■□□□ 1.67
VSX1-204ENST00000409958 ZDHHC15Q96MV8 337 aa25.51■■□□□ 1.67
VSX1-204ENST00000409958 GBA2Q9HCG7 927 aaPredicted RBP25.51■■□□□ 1.67
VSX1-204ENST00000409958 HMG20BQ9P0W2 317 aa25.51■■□□□ 1.67
VSX1-204ENST00000409958 RAB11FIP3O75154 756 aa25.5■■□□□ 1.67
VSX1-204ENST00000409958 SPDYE2Q495Y8 402 aa25.5■■□□□ 1.67
VSX1-204ENST00000409958 C2orf69Q8N8R5 385 aa25.5■■□□□ 1.67
VSX1-204ENST00000409958 SPATA5Q8NB90 893 aa25.5■■□□□ 1.67
VSX1-204ENST00000409958 KIF1BPQ96EK5 621 aa25.5■■□□□ 1.67
VSX1-204ENST00000409958 DBNLQ9UJU6 430 aaKnown RBP25.5■■□□□ 1.67
VSX1-204ENST00000409958 HHIPL1Q96JK4 782 aa25.49■■□□□ 1.67
VSX1-204ENST00000409958 DEFB129Q9H1M3 183 aa25.49■■□□□ 1.67
VSX1-204ENST00000409958 TDRD3Q9H7E2 651 aaKnown RBP25.49■■□□□ 1.67
VSX1-204ENST00000409958 ZNF70Q9UC06 446 aaPredicted RBP25.49■■□□□ 1.67
VSX1-204ENST00000409958 PPP2R3BQ9Y5P8 575 aa25.49■■□□□ 1.67
VSX1-204ENST00000409958 MCAMP43121 646 aa25.48■■□□□ 1.67
VSX1-204ENST00000409958 TTC39AQ5SRH9 613 aa25.48■■□□□ 1.67
VSX1-204ENST00000409958 SPTY2D1Q68D10 685 aaPredicted RBP25.48■■□□□ 1.67
VSX1-204ENST00000409958 ZNF512BQ96KM6 892 aaPredicted RBP25.48■■□□□ 1.67
VSX1-204ENST00000409958 CCDC8Q9H0W5 538 aaPredicted RBP25.48■■□□□ 1.67
VSX1-204ENST00000409958 VEZTQ9HBM0 779 aa25.48■■□□□ 1.67
VSX1-204ENST00000409958 VEGFBP49765 207 aa25.47■■□□□ 1.67
VSX1-204ENST00000409958 PRAMEF18Q5VWM3 479 aa25.47■■□□□ 1.67
VSX1-204ENST00000409958 APOBEC3HQ6NTF7 200 aaKnown RBP25.47■■□□□ 1.67
VSX1-204ENST00000409958 TLR7Q9NYK1 1049 aaKnown RBP25.47■■□□□ 1.67
VSX1-204ENST00000409958 ABCF2Q9UG63 623 aa25.47■■□□□ 1.67
VSX1-204ENST00000409958 FKBP1BP68106 108 aa25.46■■□□□ 1.67
VSX1-204ENST00000409958 TNFAIP1Q13829 316 aa25.46■■□□□ 1.67
VSX1-204ENST00000409958 PI16Q6UXB8 463 aa25.46■■□□□ 1.67
VSX1-204ENST00000409958 PAXIP1Q6ZW49 1069 aaPredicted RBP25.46■■□□□ 1.67
VSX1-204ENST00000409958 AACSQ86V21 672 aa25.46■■□□□ 1.67
VSX1-204ENST00000409958 CLASRPQ8N2M8 674 aaKnown RBP25.46■■□□□ 1.67
VSX1-204ENST00000409958 CRBNQ96SW2 442 aa25.46■■□□□ 1.67
VSX1-204ENST00000409958 IL1RAPL2Q9NP60 686 aa25.46■■□□□ 1.67
VSX1-204ENST00000409958 APBB1O00213 710 aa25.45■■□□□ 1.66
VSX1-204ENST00000409958 NF2P35240 595 aa25.45■■□□□ 1.66
VSX1-204ENST00000409958 HUNKP57058 714 aa25.45■■□□□ 1.66
VSX1-204ENST00000409958 GRM1Q13255 1194 aa25.45■■□□□ 1.66
VSX1-204ENST00000409958 DIXDC1Q155Q3 683 aa25.45■■□□□ 1.66
VSX1-204ENST00000409958 ECE1P42892 770 aa25.44■■□□□ 1.66
VSX1-204ENST00000409958 ERICH6Q7L0X2 663 aa25.44■■□□□ 1.66
VSX1-204ENST00000409958 DZIP1Q86YF9 867 aaKnown RBP25.44■■□□□ 1.66
VSX1-204ENST00000409958 DAGLAQ9Y4D2 1042 aa25.44■■□□□ 1.66
VSX1-204ENST00000409958 RASA3Q14644 834 aa25.43■■□□□ 1.66
VSX1-204ENST00000409958 CAPNS2Q96L46 248 aa25.43■■□□□ 1.66
VSX1-204ENST00000409958 PCDHB15Q9Y5E8 787 aa25.43■■□□□ 1.66
VSX1-204ENST00000409958 PAPPA2Q9BXP8 1791 aa25.43■■□□□ 1.66
VSX1-204ENST00000409958 WDR33Q9C0J8 1336 aaKnown RBP25.43■■□□□ 1.66
VSX1-204ENST00000409958 CYP4F22Q6NT55 531 aa25.42■■□□□ 1.66
VSX1-204ENST00000409958 SLF2Q8IX21 1173 aa25.42■■□□□ 1.66
VSX1-204ENST00000409958 TMOD2Q9NZR1 351 aa25.42■■□□□ 1.66
VSX1-204ENST00000409958 TNNI2P48788 182 aa25.41■■□□□ 1.66
VSX1-204ENST00000409958 FKBP1CQ5VVH2 108 aa25.41■■□□□ 1.66
VSX1-204ENST00000409958 TBC1D9Q6ZT07 1266 aa25.41■■□□□ 1.66
VSX1-204ENST00000409958 FAM163AQ96GL9 167 aaPredicted RBP25.41■■□□□ 1.66
VSX1-204ENST00000409958 DCTPP1Q9H773 170 aa25.41■■□□□ 1.66
VSX1-204ENST00000409958 SNRKQ9NRH2 765 aa25.41■■□□□ 1.66
VSX1-204ENST00000409958 AKAP11Q9UKA4 1901 aa25.41■■□□□ 1.66
VSX1-204ENST00000409958 GAKO14976 1311 aa25.41■■□□□ 1.66
VSX1-204ENST00000409958 TCP10L2B9ZVM9 353 aa25.4■■□□□ 1.66
VSX1-204ENST00000409958 SUPT20HL1Q3ZLR7 823 aa25.4■■□□□ 1.66
VSX1-204ENST00000409958 PCNTO95613 3336 aa25.4■■□□□ 1.66
VSX1-204ENST00000409958 IFIT2P09913 472 aaKnown RBP25.39■■□□□ 1.66
VSX1-204ENST00000409958 HSPA1AP0DMV8 641 aaKnown RBP25.39■■□□□ 1.66
VSX1-204ENST00000409958 HSPA1BP0DMV9 641 aaKnown RBP25.39■■□□□ 1.66
VSX1-204ENST00000409958 MECOMQ03112 1051 aa25.39■■□□□ 1.66
VSX1-204ENST00000409958 AAMPQ13685 434 aa25.39■■□□□ 1.66
VSX1-204ENST00000409958 RGMBQ6NW40 437 aa25.39■■□□□ 1.66
VSX1-204ENST00000409958 LRRCC1Q9C099 1032 aa25.39■■□□□ 1.66
VSX1-204ENST00000409958 MYH2Q9UKX2 1941 aa25.39■■□□□ 1.65
VSX1-204ENST00000409958 CACNB3P54284 484 aa25.38■■□□□ 1.65
VSX1-204ENST00000409958 TTLL12Q14166 644 aaPredicted RBP25.38■■□□□ 1.65
VSX1-204ENST00000409958 CDC42EP5Q6NZY7 148 aa25.38■■□□□ 1.65
VSX1-204ENST00000409958 FAM83AQ86UY5 434 aa25.38■■□□□ 1.65
VSX1-204ENST00000409958 NSUN4Q96CB9 384 aaKnown RBP25.38■■□□□ 1.65
VSX1-204ENST00000409958 LRP2BPQ9P2M1 347 aa25.38■■□□□ 1.65
VSX1-204ENST00000409958 IGSF3O75054 1194 aa25.37■■□□□ 1.65
VSX1-204ENST00000409958 CYP2E1P05181 493 aaPredicted RBP25.37■■□□□ 1.65
VSX1-204ENST00000409958 ZAP70P43403 619 aa25.37■■□□□ 1.65
VSX1-204ENST00000409958 GSTO1P78417 241 aa25.37■■□□□ 1.65
VSX1-204ENST00000409958 NBPF12Q5TAG4 269 aaPredicted RBP25.37■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms