RNA–Protein interactions for RNA: ENST00000409357.5

NIF3L1-204, Transcript of NGG1 interacting factor 3 like 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene NIF3L1, Length 1,679 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-204ENST00000409357 KDM3BQ7LBC6 1761 aa12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 N4BP2Q86UW6 1770 aaPredicted RBP12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 SOS1Q07889 1333 aaPredicted RBP12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 CHD4Q14839 1912 aa12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 CCDC196A0A1B0GTZ2 297 aa12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 PRAMEF22A3QJZ6 481 aa12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 GOLGA6L19H0YKK7 550 aa12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 TRIM66O15016 1216 aa12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 ETF1P62495 437 aaKnown RBP12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 ST5P78524 1137 aa12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 LRRFIP1Q32MZ4 808 aaKnown RBP12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 MCTP2Q6DN12 878 aa12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 TTC6Q86TZ1 520 aa12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 FCHSD1Q86WN1 690 aa12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 HNRNPLLQ8WVV9 542 aaKnown RBP12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 THUMPD2Q9BTF0 503 aaKnown RBP12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 LCMT1Q9UIC8 334 aa12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 ADAM21Q9UKJ8 722 aa12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 WWC3Q9ULE0 1092 aa12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 HEG1Q9ULI3 1381 aa12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 USP42Q9H9J4 1324 aaKnown RBP12.34□□□□□ -0.43
NIF3L1-204ENST00000409357 BTBD11A6QL63 1104 aa12.34□□□□□ -0.43
NIF3L1-204ENST00000409357 MAP2K7O14733 419 aa12.34□□□□□ -0.43
NIF3L1-204ENST00000409357 YBX3P16989 372 aaKnown RBP eCLIP12.34□□□□□ -0.434e-6■□□□□ 11.2
NIF3L1-204ENST00000409357 RFC4P35249 363 aa12.34□□□□□ -0.43
NIF3L1-204ENST00000409357 TSGA10IPQ3SY00 556 aa12.34□□□□□ -0.43
NIF3L1-204ENST00000409357 VPS53Q5VIR6 699 aa12.34□□□□□ -0.43
NIF3L1-204ENST00000409357 CC2D1AQ6P1N0 951 aaPredicted RBP12.34□□□□□ -0.43
NIF3L1-204ENST00000409357 MMS22LQ6ZRQ5 1243 aa12.34□□□□□ -0.43
NIF3L1-204ENST00000409357 EFCAB13Q8IY85 973 aa12.34□□□□□ -0.43
NIF3L1-204ENST00000409357 ANO2Q9NQ90 1003 aa12.34□□□□□ -0.43
NIF3L1-204ENST00000409357 MIS18AQ9NYP9 233 aa12.34□□□□□ -0.43
NIF3L1-204ENST00000409357 COL15A1P39059 1388 aa12.34□□□□□ -0.43
NIF3L1-204ENST00000409357 SATB1Q01826 763 aa12.33□□□□□ -0.44
NIF3L1-204ENST00000409357 BRD3Q15059 726 aa12.33□□□□□ -0.44
NIF3L1-204ENST00000409357 PPP1R13BQ96KQ4 1090 aa12.33□□□□□ -0.44
NIF3L1-204ENST00000409357 SCN7AQ01118 1682 aa12.32□□□□□ -0.44
NIF3L1-204ENST00000409357 LIG1P18858 919 aa12.32□□□□□ -0.44
NIF3L1-204ENST00000409357 PIP4K2AP48426 406 aaPredicted RBP12.32□□□□□ -0.44
NIF3L1-204ENST00000409357 E4F1Q66K89 784 aaPredicted RBP12.32□□□□□ -0.44
NIF3L1-204ENST00000409357 RUFY3Q7L099 469 aa12.32□□□□□ -0.44
NIF3L1-204ENST00000409357 PACS2Q86VP3 889 aa12.32□□□□□ -0.44
NIF3L1-204ENST00000409357 BANK1Q8NDB2 785 aa12.32□□□□□ -0.44
NIF3L1-204ENST00000409357 RABGGTAQ92696 567 aa12.32□□□□□ -0.44
NIF3L1-204ENST00000409357 ALDH8A1Q9H2A2 487 aaPredicted RBP12.32□□□□□ -0.44
NIF3L1-204ENST00000409357 ZSCAN16Q9H4T2 348 aaPredicted RBP12.32□□□□□ -0.44
NIF3L1-204ENST00000409357 ARFGAP3Q9NP61 516 aa12.32□□□□□ -0.44
NIF3L1-204ENST00000409357 A1CFQ9NQ94 594 aaKnown RBP12.32□□□□□ -0.44
NIF3L1-204ENST00000409357 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.32□□□□□ -0.44
NIF3L1-204ENST00000409357 AFDNP55196 1824 aaKnown RBP12.32□□□□□ -0.44
NIF3L1-204ENST00000409357 CCDC151A5D8V7 595 aa12.32□□□□□ -0.44
NIF3L1-204ENST00000409357 AK2P54819 239 aa12.32□□□□□ -0.44
NIF3L1-204ENST00000409357 DDR1Q08345 913 aa12.32□□□□□ -0.44
NIF3L1-204ENST00000409357 STX1AQ16623 288 aa12.32□□□□□ -0.44
NIF3L1-204ENST00000409357 USPL1Q5W0Q7 1092 aa12.32□□□□□ -0.44
NIF3L1-204ENST00000409357 TSPYL6Q8N831 410 aa12.32□□□□□ -0.44
NIF3L1-204ENST00000409357 MPHOSPH8Q99549 860 aa12.32□□□□□ -0.44
NIF3L1-204ENST00000409357 FUT8Q9BYC5 575 aa12.32□□□□□ -0.44
NIF3L1-204ENST00000409357 CXorf56Q9H5V9 222 aa12.32□□□□□ -0.44
NIF3L1-204ENST00000409357 MBIPQ9NS73 344 aa12.32□□□□□ -0.44
NIF3L1-204ENST00000409357 DACT1Q9NYF0 836 aa12.32□□□□□ -0.44
NIF3L1-204ENST00000409357 CD2APQ9Y5K6 639 aa12.32□□□□□ -0.44
NIF3L1-204ENST00000409357 SNX14Q9Y5W7 946 aa12.32□□□□□ -0.44
NIF3L1-204ENST00000409357 BRCA1P38398 1863 aaKnown RBP12.31□□□□□ -0.44
NIF3L1-204ENST00000409357 C10orf71Q711Q0 1435 aa12.31□□□□□ -0.44
NIF3L1-204ENST00000409357 PXDNLA1KZ92 1463 aa12.31□□□□□ -0.44
NIF3L1-204ENST00000409357 A0A087WUV0 522 aaPredicted RBP12.31□□□□□ -0.44
NIF3L1-204ENST00000409357 EIF3CLB5ME19 914 aaKnown RBP12.31□□□□□ -0.44
NIF3L1-204ENST00000409357 POLR3GO15318 223 aaPredicted RBP12.31□□□□□ -0.44
NIF3L1-204ENST00000409357 SGSM2O43147 1006 aa12.31□□□□□ -0.44
NIF3L1-204ENST00000409357 TUBBP07437 444 aa12.31□□□□□ -0.44
NIF3L1-204ENST00000409357 YY1P25490 414 aa12.31□□□□□ -0.44
NIF3L1-204ENST00000409357 GJB2P29033 226 aa12.31□□□□□ -0.44
NIF3L1-204ENST00000409357 ZRSR1Q15695 479 aaKnown RBP12.31□□□□□ -0.44
NIF3L1-204ENST00000409357 GPR162Q16538 588 aa12.31□□□□□ -0.44
NIF3L1-204ENST00000409357 FMNL2Q96PY5 1086 aa12.31□□□□□ -0.44
NIF3L1-204ENST00000409357 EIF3CQ99613 913 aaKnown RBP12.31□□□□□ -0.44
NIF3L1-204ENST00000409357 BPIFA3Q9BQP9 254 aa12.31□□□□□ -0.44
NIF3L1-204ENST00000409357 UPF3BQ9BZI7 483 aaKnown RBP12.31□□□□□ -0.44
NIF3L1-204ENST00000409357 HYPKQ9NX55 129 aa12.31□□□□□ -0.44
NIF3L1-204ENST00000409357 EXOC6BQ9Y2D4 811 aa12.31□□□□□ -0.44
NIF3L1-204ENST00000409357 LAMB4A4D0S4 1761 aa12.31□□□□□ -0.44
NIF3L1-204ENST00000409357 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.3□□□□□ -0.44
NIF3L1-204ENST00000409357 GOLGA6L9A6NEM1 432 aa12.3□□□□□ -0.44
NIF3L1-204ENST00000409357 POTEB2H3BUK9 544 aa12.3□□□□□ -0.44
NIF3L1-204ENST00000409357 A1BGP04217 495 aa12.3□□□□□ -0.44
NIF3L1-204ENST00000409357 USP8P40818 1118 aa12.3□□□□□ -0.44
NIF3L1-204ENST00000409357 CT47A1Q5JQC4 288 aaPredicted RBP12.3□□□□□ -0.44
NIF3L1-204ENST00000409357 RSRC2Q7L4I2 434 aaKnown RBP12.3□□□□□ -0.44
NIF3L1-204ENST00000409357 NLGN1Q8N2Q7 840 aa12.3□□□□□ -0.44
NIF3L1-204ENST00000409357 STAG1Q8WVM7 1258 aa12.3□□□□□ -0.44
NIF3L1-204ENST00000409357 USP16Q9Y5T5 823 aa12.3□□□□□ -0.44
NIF3L1-204ENST00000409357 BCORQ6W2J9 1755 aa12.3□□□□□ -0.44
NIF3L1-204ENST00000409357 SASH3O75995 380 aa12.29□□□□□ -0.44
NIF3L1-204ENST00000409357 GYS2P54840 703 aa12.29□□□□□ -0.44
NIF3L1-204ENST00000409357 FOXD4L6Q3SYB3 417 aaPredicted RBP12.29□□□□□ -0.44
NIF3L1-204ENST00000409357 FOXD4L3Q6VB84 417 aaPredicted RBP12.29□□□□□ -0.44
NIF3L1-204ENST00000409357 LRRCC1Q9C099 1032 aa12.29□□□□□ -0.44
NIF3L1-204ENST00000409357 ANO10Q9NW15 660 aa12.29□□□□□ -0.44
NIF3L1-204ENST00000409357 NRXN2Q9P2S2 1712 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms