RNA–Protein interactions for RNA: ENST00000405262.6

TNFSF11-204, Transcript of TNF superfamily member 11, human

TSL 5 BASIC

Gene TNFSF11, Length 2,135 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TNFSF11-204	ENST00000405262	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	11.24	□□□□□ -0.61
TNFSF11-204	ENST00000405262	ARHGEF25	Q86VW2	580 aa		11.24	□□□□□ -0.61
TNFSF11-204	ENST00000405262	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	11.24	□□□□□ -0.61
TNFSF11-204	ENST00000405262	CEP112	Q8N8E3	955 aa		11.24	□□□□□ -0.61
TNFSF11-204	ENST00000405262	CNNM3	Q8NE01	707 aa		11.24	□□□□□ -0.61
TNFSF11-204	ENST00000405262	PI4K2B	Q8TCG2	481 aa		11.24	□□□□□ -0.61
TNFSF11-204	ENST00000405262	LARP6	Q9BRS8	491 aa	Known RBP	11.24	□□□□□ -0.61
TNFSF11-204	ENST00000405262	VIPAS39	Q9H9C1	493 aa		11.24	□□□□□ -0.61
TNFSF11-204	ENST00000405262	IFNK	Q9P0W0	207 aa		11.24	□□□□□ -0.61
TNFSF11-204	ENST00000405262	TPCN1	Q9ULQ1	816 aa		11.24	□□□□□ -0.61
TNFSF11-204	ENST00000405262	PARP4	Q9UKK3	1724 aa	Known RBP	11.24	□□□□□ -0.61
TNFSF11-204	ENST00000405262	N4BP2	Q86UW6	1770 aa	Predicted RBP	11.24	□□□□□ -0.61
TNFSF11-204	ENST00000405262	ATXN2	Q99700	1313 aa	Known RBP	11.24	□□□□□ -0.61
TNFSF11-204	ENST00000405262	USP42	Q9H9J4	1324 aa	Known RBP	11.24	□□□□□ -0.61
TNFSF11-204	ENST00000405262	TRIM37	O94972	964 aa		11.23	□□□□□ -0.61
TNFSF11-204	ENST00000405262	HNRNPH1	P31943	449 aa	Known RBP	11.23	□□□□□ -0.61
TNFSF11-204	ENST00000405262	DDR1	Q08345	913 aa		11.23	□□□□□ -0.61
TNFSF11-204	ENST00000405262	LRCH2	Q5VUJ6	765 aa		11.23	□□□□□ -0.61
TNFSF11-204	ENST00000405262	CCAR1	Q8IX12	1150 aa	Known RBP	11.23	□□□□□ -0.61
TNFSF11-204	ENST00000405262	ENGASE	Q8NFI3	743 aa		11.23	□□□□□ -0.61
TNFSF11-204	ENST00000405262	ERCC4	Q92889	916 aa	Predicted RBP	11.23	□□□□□ -0.61
TNFSF11-204	ENST00000405262	HSP90B1	P14625	803 aa	Known RBP	11.23	□□□□□ -0.61
TNFSF11-204	ENST00000405262	ERCC3	P19447	782 aa		11.23	□□□□□ -0.61
TNFSF11-204	ENST00000405262	IL13	P35225	146 aa		11.23	□□□□□ -0.61
TNFSF11-204	ENST00000405262	FAM196A	Q6ZSG2	479 aa		11.23	□□□□□ -0.61
TNFSF11-204	ENST00000405262	SRGAP1	Q7Z6B7	1085 aa		11.23	□□□□□ -0.61
TNFSF11-204	ENST00000405262	NME9	Q86XW9	330 aa		11.23	□□□□□ -0.61
TNFSF11-204	ENST00000405262	NECAB1	Q8N987	351 aa		11.23	□□□□□ -0.61
TNFSF11-204	ENST00000405262	CTCFL	Q8NI51	663 aa	Predicted RBP	11.23	□□□□□ -0.61
TNFSF11-204	ENST00000405262	THRAP3	Q9Y2W1	955 aa	Known RBP	11.23	□□□□□ -0.61
TNFSF11-204	ENST00000405262	DISP2	A7MBM2	1401 aa		11.23	□□□□□ -0.61
TNFSF11-204	ENST00000405262	MYH15	Q9Y2K3	1946 aa		11.22	□□□□□ -0.61
TNFSF11-204	ENST00000405262	USP54	Q70EL1	1684 aa		11.22	□□□□□ -0.61
TNFSF11-204	ENST00000405262	TMCO5B	A8MYB1	307 aa		11.22	□□□□□ -0.61
TNFSF11-204	ENST00000405262	IKBKB	O14920	756 aa		11.22	□□□□□ -0.61
TNFSF11-204	ENST00000405262	AARS	P49588	968 aa	Known RBP eCLIP	11.22	□□□□□ -0.61
TNFSF11-204	ENST00000405262	NECTIN1	Q15223	517 aa		11.22	□□□□□ -0.61
TNFSF11-204	ENST00000405262	KCNH5	Q8NCM2	988 aa		11.22	□□□□□ -0.61
TNFSF11-204	ENST00000405262	KIFC2	Q96AC6	838 aa		11.22	□□□□□ -0.61
TNFSF11-204	ENST00000405262	SYTL4	Q96C24	671 aa	Predicted RBP	11.22	□□□□□ -0.61
TNFSF11-204	ENST00000405262	PPP2R2C	Q9Y2T4	447 aa		11.22	□□□□□ -0.61
TNFSF11-204	ENST00000405262	LRRC37A3	O60309	1634 aa		11.22	□□□□□ -0.61
TNFSF11-204	ENST00000405262	MAP3K5	Q99683	1374 aa		11.22	□□□□□ -0.61
TNFSF11-204	ENST00000405262	PATL2	C9JE40	543 aa	Known RBP	11.21	□□□□□ -0.61
TNFSF11-204	ENST00000405262	CPA1	P15085	419 aa		11.21	□□□□□ -0.61
TNFSF11-204	ENST00000405262	CHMP4BP1	P59074	171 aa		11.21	□□□□□ -0.61
TNFSF11-204	ENST00000405262	GNG11	P61952	73 aa		11.21	□□□□□ -0.61
TNFSF11-204	ENST00000405262	MCM6	Q14566	821 aa		11.21	□□□□□ -0.61
TNFSF11-204	ENST00000405262	SAMD1	Q6SPF0	538 aa	Predicted RBP	11.21	□□□□□ -0.61
TNFSF11-204	ENST00000405262	TOM1L2	Q6ZVM7	507 aa		11.21	□□□□□ -0.61
TNFSF11-204	ENST00000405262	EPC1	Q9H2F5	836 aa		11.21	□□□□□ -0.61
TNFSF11-204	ENST00000405262	GNL3L	Q9NVN8	582 aa	Known RBP	11.21	□□□□□ -0.61
TNFSF11-204	ENST00000405262	WNK3	Q9BYP7	1800 aa		11.21	□□□□□ -0.61
TNFSF11-204	ENST00000405262	WDR17	Q8IZU2	1322 aa		11.21	□□□□□ -0.61
TNFSF11-204	ENST00000405262	USP31	Q70CQ4	1352 aa		11.21	□□□□□ -0.61
TNFSF11-204	ENST00000405262	SHOX2	O60902	331 aa	Predicted RBP	11.21	□□□□□ -0.62
TNFSF11-204	ENST00000405262	HMOX1	P09601	288 aa		11.21	□□□□□ -0.62
TNFSF11-204	ENST00000405262	C11orf91	Q3C1V1	193 aa		11.21	□□□□□ -0.62
TNFSF11-204	ENST00000405262	ADCK5	Q3MIX3	580 aa		11.21	□□□□□ -0.62
TNFSF11-204	ENST00000405262	PRPF40B	Q6NWY9	871 aa	Known RBP	11.21	□□□□□ -0.62
TNFSF11-204	ENST00000405262	AFAP1L1	Q8TED9	768 aa		11.21	□□□□□ -0.62
TNFSF11-204	ENST00000405262	PXDNL	A1KZ92	1463 aa		11.2	□□□□□ -0.62
TNFSF11-204	ENST00000405262	MAP2K1	Q02750	393 aa	Predicted RBP	11.2	□□□□□ -0.62
TNFSF11-204	ENST00000405262	NEDD9	Q14511	834 aa		11.2	□□□□□ -0.62
TNFSF11-204	ENST00000405262	EZH2	Q15910	746 aa	Known RBP	11.2	□□□□□ -0.62
TNFSF11-204	ENST00000405262	NBPF6	Q5VWK0	638 aa		11.2	□□□□□ -0.62
TNFSF11-204	ENST00000405262	GBP6	Q6ZN66	633 aa		11.2	□□□□□ -0.62
TNFSF11-204	ENST00000405262	GIMAP7	Q8NHV1	300 aa		11.2	□□□□□ -0.62
TNFSF11-204	ENST00000405262	NBPF4	Q96M43	638 aa		11.2	□□□□□ -0.62
TNFSF11-204	ENST00000405262	BICC1	Q9H694	974 aa	Known RBP	11.2	□□□□□ -0.62
TNFSF11-204	ENST00000405262	ANKZF1	Q9H8Y5	726 aa		11.2	□□□□□ -0.62
TNFSF11-204	ENST00000405262	EDC4	Q6P2E9	1401 aa	Known RBP	11.2	□□□□□ -0.62
TNFSF11-204	ENST00000405262	PEAK1	Q9H792	1746 aa		11.2	□□□□□ -0.62
TNFSF11-204	ENST00000405262	PNMA6E	A0A0J9YXQ4	647 aa		11.2	□□□□□ -0.62
TNFSF11-204	ENST00000405262	CUTA	O60888	179 aa		11.2	□□□□□ -0.62
TNFSF11-204	ENST00000405262	SLC4A2	P04920	1241 aa		11.2	□□□□□ -0.62
TNFSF11-204	ENST00000405262	FANCC	Q00597	558 aa		11.2	□□□□□ -0.62
TNFSF11-204	ENST00000405262	CASP8	Q14790	479 aa		11.2	□□□□□ -0.62
TNFSF11-204	ENST00000405262	NAA16	Q6N069	864 aa	Predicted RBP	11.2	□□□□□ -0.62
TNFSF11-204	ENST00000405262	KCNV1	Q6PIU1	500 aa		11.2	□□□□□ -0.62
TNFSF11-204	ENST00000405262	JMY	Q8N9B5	988 aa		11.2	□□□□□ -0.62
TNFSF11-204	ENST00000405262	PRPF38A	Q8NAV1	312 aa	Known RBP	11.2	□□□□□ -0.62
TNFSF11-204	ENST00000405262	SSH3	Q8TE77	659 aa		11.2	□□□□□ -0.62
TNFSF11-204	ENST00000405262	KAT2B	Q92831	832 aa		11.2	□□□□□ -0.62
TNFSF11-204	ENST00000405262	ZNF396	Q96N95	335 aa	Predicted RBP	11.2	□□□□□ -0.62
TNFSF11-204	ENST00000405262	GOLPH3L	Q9H4A5	285 aa		11.2	□□□□□ -0.62
TNFSF11-204	ENST00000405262	FAM204A	Q9H8W3	233 aa		11.2	□□□□□ -0.62
TNFSF11-204	ENST00000405262	LTN1	O94822	1766 aa		11.19	□□□□□ -0.62
TNFSF11-204	ENST00000405262		A0A1W2PQ27	194 aa		11.19	□□□□□ -0.62
TNFSF11-204	ENST00000405262		A0A1W2PQ64	194 aa		11.19	□□□□□ -0.62
TNFSF11-204	ENST00000405262		A0A1W2PQD8	194 aa		11.19	□□□□□ -0.62
TNFSF11-204	ENST00000405262	GOLIM4	O00461	696 aa		11.19	□□□□□ -0.62
TNFSF11-204	ENST00000405262	EXOC5	O00471	708 aa		11.19	□□□□□ -0.62
TNFSF11-204	ENST00000405262	EBAG9	O00559	213 aa		11.19	□□□□□ -0.62
TNFSF11-204	ENST00000405262	STX10	O60499	249 aa		11.19	□□□□□ -0.62
TNFSF11-204	ENST00000405262	GLRX3	O76003	335 aa	Known RBP	11.19	□□□□□ -0.62
TNFSF11-204	ENST00000405262	CWC27	Q6UX04	472 aa	Known RBP	11.19	□□□□□ -0.62
TNFSF11-204	ENST00000405262	CAMKK2	Q96RR4	588 aa		11.19	□□□□□ -0.62
TNFSF11-204	ENST00000405262	WDR24	Q96S15	920 aa		11.19	□□□□□ -0.62
TNFSF11-204	ENST00000405262	SNRK	Q9NRH2	765 aa		11.19	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 26 ms