RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 TRIM75PA6NK02 468 aa21.28■■□□□ 1
USP48-204ENST00000400301 ZNF202O95125 648 aa21.28■■□□□ 1
USP48-204ENST00000400301 ZBTB38Q8NAP3 1195 aaPredicted RBP21.28■■□□□ 1
USP48-204ENST00000400301 NSUN7Q8NE18 718 aaKnown RBP21.28■■□□□ 1
USP48-204ENST00000400301 MYRIPQ8NFW9 859 aa21.28■■□□□ 1
USP48-204ENST00000400301 CRNKL1Q9BZJ0 848 aaKnown RBP21.28■■□□□ 1
USP48-204ENST00000400301 NOL12Q9UGY1 213 aaKnown RBP eCLIP21.28■■□□□ 1
USP48-204ENST00000400301 V9GYY5 206 aaPredicted RBP21.28■■□□□ 1
USP48-204ENST00000400301 CEP170BQ9Y4F5 1589 aaPredicted RBP21.28■■□□□ 1
USP48-204ENST00000400301 MYSM1Q5VVJ2 828 aa21.27■■□□□ 1
USP48-204ENST00000400301 KRT40Q6A162 431 aa21.27■■□□□ 1
USP48-204ENST00000400301 KRI1Q8N9T8 703 aaKnown RBP21.27■■□□□ 1
USP48-204ENST00000400301 MRVI1Q9Y6F6 885 aa21.27■■□□□ 1
USP48-204ENST00000400301 KIF5BP33176 963 aa21.26■□□□□ 0.99
USP48-204ENST00000400301 EIF5P55010 431 aaKnown RBP21.26■□□□□ 0.99
USP48-204ENST00000400301 TMCO3Q6UWJ1 677 aa21.26■□□□□ 0.99
USP48-204ENST00000400301 ACBD3Q9H3P7 528 aa21.26■□□□□ 0.99
USP48-204ENST00000400301 ASAP1Q9ULH1 1129 aa21.26■□□□□ 0.99
USP48-204ENST00000400301 NBPF5PQ86XG9 351 aaPredicted RBP21.26■□□□□ 0.99
USP48-204ENST00000400301 RIOK3O14730 519 aaKnown RBP21.26■□□□□ 0.99
USP48-204ENST00000400301 CASQ1P31415 396 aa21.26■□□□□ 0.99
USP48-204ENST00000400301 SLFNL1Q499Z3 407 aa21.26■□□□□ 0.99
USP48-204ENST00000400301 DHX58Q96C10 678 aa21.26■□□□□ 0.99
USP48-204ENST00000400301 ZNF287Q9HBT7 754 aa21.26■□□□□ 0.99
USP48-204ENST00000400301 DNAI1Q9UI46 699 aa21.26■□□□□ 0.99
USP48-204ENST00000400301 ADD1P35611 737 aaKnown RBP21.25■□□□□ 0.99
USP48-204ENST00000400301 CTSWP56202 376 aa21.25■□□□□ 0.99
USP48-204ENST00000400301 KAT14Q9H8E8 782 aa21.25■□□□□ 0.99
USP48-204ENST00000400301 HEG1Q9ULI3 1381 aa21.25■□□□□ 0.99
USP48-204ENST00000400301 LRMPQ12912 555 aa21.25■□□□□ 0.99
USP48-204ENST00000400301 TOB2Q14106 344 aaPredicted RBP21.25■□□□□ 0.99
USP48-204ENST00000400301 YEATS4O95619 227 aa21.25■□□□□ 0.99
USP48-204ENST00000400301 EPS15P42566 896 aa21.25■□□□□ 0.99
USP48-204ENST00000400301 GNG11P61952 73 aa21.25■□□□□ 0.99
USP48-204ENST00000400301 CTDSPL2Q05D32 466 aa21.25■□□□□ 0.99
USP48-204ENST00000400301 ADALQ6DHV7 355 aa21.25■□□□□ 0.99
USP48-204ENST00000400301 TSC1Q92574 1164 aa21.25■□□□□ 0.99
USP48-204ENST00000400301 FTOQ9C0B1 505 aaKnown RBP eCLIP21.25■□□□□ 0.99
USP48-204ENST00000400301 CIAO1O76071 339 aa21.25■□□□□ 0.99
USP48-204ENST00000400301 TNNT3P45378 269 aaPredicted RBP21.25■□□□□ 0.99
USP48-204ENST00000400301 H7C1W4 665 aa21.24■□□□□ 0.99
USP48-204ENST00000400301 SSBP05455 408 aaKnown RBP eCLIP21.24■□□□□ 0.99
USP48-204ENST00000400301 MYL5Q02045 173 aa21.24■□□□□ 0.99
USP48-204ENST00000400301 NGLY1Q96IV0 654 aa21.24■□□□□ 0.99
USP48-204ENST00000400301 GREM2Q9H772 168 aa21.24■□□□□ 0.99
USP48-204ENST00000400301 CEMIPQ8WUJ3 1361 aa21.24■□□□□ 0.99
USP48-204ENST00000400301 KIF5CO60282 957 aa21.24■□□□□ 0.99
USP48-204ENST00000400301 DIS3L2Q8IYB7 885 aaKnown RBP21.24■□□□□ 0.99
USP48-204ENST00000400301 SPATA5Q8NB90 893 aa21.24■□□□□ 0.99
USP48-204ENST00000400301 OSBP2Q969R2 916 aa21.24■□□□□ 0.99
USP48-204ENST00000400301 PDLIM2Q96JY6 352 aa21.24■□□□□ 0.99
USP48-204ENST00000400301 NLRP3Q96P20 1036 aa21.24■□□□□ 0.99
USP48-204ENST00000400301 WDR17Q8IZU2 1322 aa21.24■□□□□ 0.99
USP48-204ENST00000400301 KIF4BQ2VIQ3 1234 aa21.23■□□□□ 0.99
USP48-204ENST00000400301 FBXO3Q9UK99 471 aa21.23■□□□□ 0.99
USP48-204ENST00000400301 STX8Q9UNK0 236 aa21.23■□□□□ 0.99
USP48-204ENST00000400301 DIP2AQ14689 1571 aa21.23■□□□□ 0.99
USP48-204ENST00000400301 KRT18P05783 430 aaKnown RBP21.23■□□□□ 0.99
USP48-204ENST00000400301 PI16Q6UXB8 463 aa21.23■□□□□ 0.99
USP48-204ENST00000400301 UBE2Q2Q8WVN8 375 aa21.23■□□□□ 0.99
USP48-204ENST00000400301 USP42Q9H9J4 1324 aaKnown RBP21.23■□□□□ 0.99
USP48-204ENST00000400301 IFT172Q9UG01 1749 aa21.23■□□□□ 0.99
USP48-204ENST00000400301 BMP15O95972 392 aa21.23■□□□□ 0.99
USP48-204ENST00000400301 CABP5Q9NP86 173 aa21.23■□□□□ 0.99
USP48-204ENST00000400301 KCNH3Q9ULD8 1083 aa21.23■□□□□ 0.99
USP48-204ENST00000400301 PCDHA7Q9UN72 937 aa21.23■□□□□ 0.99
USP48-204ENST00000400301 M0R2C6 588 aa21.23■□□□□ 0.99
USP48-204ENST00000400301 PDE6AP16499 860 aa21.23■□□□□ 0.99
USP48-204ENST00000400301 UBA7P41226 1012 aa21.23■□□□□ 0.99
USP48-204ENST00000400301 SEC63Q9UGP8 760 aaKnown RBP21.23■□□□□ 0.99
USP48-204ENST00000400301 SPECC1Q5M775 1068 aa21.22■□□□□ 0.99
USP48-204ENST00000400301 ZHX3Q9H4I2 956 aa21.22■□□□□ 0.99
USP48-204ENST00000400301 ITSN1Q15811 1721 aa21.22■□□□□ 0.99
USP48-204ENST00000400301 NUP88Q99567 741 aaPredicted RBP21.22■□□□□ 0.99
USP48-204ENST00000400301 CARD10Q9BWT7 1032 aa21.22■□□□□ 0.99
USP48-204ENST00000400301 DEF6Q9H4E7 631 aa21.22■□□□□ 0.99
USP48-204ENST00000400301 FBXO18Q8NFZ0 1043 aa21.22■□□□□ 0.99
USP48-204ENST00000400301 SMARCC1Q92922 1105 aaPredicted RBP21.22■□□□□ 0.99
USP48-204ENST00000400301 TANGO6Q9C0B7 1094 aa21.22■□□□□ 0.99
USP48-204ENST00000400301 PXDNLA1KZ92 1463 aa21.21■□□□□ 0.99
USP48-204ENST00000400301 PYCARDQ9ULZ3 195 aa21.21■□□□□ 0.99
USP48-204ENST00000400301 RESTQ13127 1097 aa21.21■□□□□ 0.99
USP48-204ENST00000400301 PARP10Q53GL7 1025 aa21.21■□□□□ 0.99
USP48-204ENST00000400301 RILPL1Q5EBL4 403 aa21.21■□□□□ 0.99
USP48-204ENST00000400301 SETDB2Q96T68 719 aa21.21■□□□□ 0.99
USP48-204ENST00000400301 SALL3Q9BXA9 1300 aa21.21■□□□□ 0.99
USP48-204ENST00000400301 N4BP3O15049 544 aa21.21■□□□□ 0.99
USP48-204ENST00000400301 GIGYF2Q6Y7W6 1299 aaKnown RBP21.21■□□□□ 0.99
USP48-204ENST00000400301 KIAA1468Q9P260 1216 aa21.21■□□□□ 0.99
USP48-204ENST00000400301 DIP2BQ9P265 1576 aa21.21■□□□□ 0.99
USP48-204ENST00000400301 MAP3K15Q6ZN16 1313 aa21.2■□□□□ 0.99
USP48-204ENST00000400301 PRDM1O75626 825 aa21.2■□□□□ 0.98
USP48-204ENST00000400301 SLU7O95391 586 aaKnown RBP21.2■□□□□ 0.98
USP48-204ENST00000400301 STX17P56962 302 aa21.2■□□□□ 0.98
USP48-204ENST00000400301 RTL9Q8NET4 1388 aa21.2■□□□□ 0.98
USP48-204ENST00000400301 GOLGA6L9A6NEM1 432 aa21.2■□□□□ 0.98
USP48-204ENST00000400301 PHKA1P46020 1223 aa21.2■□□□□ 0.98
USP48-204ENST00000400301 SPTY2D1Q68D10 685 aaPredicted RBP21.2■□□□□ 0.98
USP48-204ENST00000400301 SIGLEC1Q9BZZ2 1709 aa21.2■□□□□ 0.98
USP48-204ENST00000400301 MROH5Q6ZUA9 1318 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 266.5 ms