RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 ANKRD44Q8N8A2 993 aa35.82■■■■□ 3.32
HMGB1-205ENST00000399494 TEPSINQ96N21 525 aa35.82■■■■□ 3.32
HMGB1-205ENST00000399494 LAMB1P07942 1786 aa35.81■■■■□ 3.32
HMGB1-205ENST00000399494 CRKP46108 304 aa35.81■■■■□ 3.32
HMGB1-205ENST00000399494 GRIK5Q16478 980 aa35.81■■■■□ 3.32
HMGB1-205ENST00000399494 TESPA1A2RU30 521 aaPredicted RBP35.8■■■■□ 3.32
HMGB1-205ENST00000399494 TRMT2AQ8IZ69 625 aaKnown RBP35.8■■■■□ 3.32
HMGB1-205ENST00000399494 PTPN18Q99952 460 aa35.8■■■■□ 3.32
HMGB1-205ENST00000399494 OTUD7BQ6GQQ9 843 aa35.79■■■■□ 3.32
HMGB1-205ENST00000399494 CDAN1Q8IWY9 1227 aa35.79■■■■□ 3.32
HMGB1-205ENST00000399494 IQSEC3Q9UPP2 1182 aaPredicted RBP35.79■■■■□ 3.32
HMGB1-205ENST00000399494 TCP10L2B9ZVM9 353 aa35.78■■■■□ 3.32
HMGB1-205ENST00000399494 OTOP1Q7RTM1 612 aa35.78■■■■□ 3.32
HMGB1-205ENST00000399494 VPS37DQ86XT2 251 aa35.78■■■■□ 3.32
HMGB1-205ENST00000399494 VGLL2Q8N8G2 317 aa35.78■■■■□ 3.32
HMGB1-205ENST00000399494 ELP3Q9H9T3 547 aa35.78■■■■□ 3.32
HMGB1-205ENST00000399494 TRIM17Q9Y577 477 aa35.78■■■■□ 3.32
HMGB1-205ENST00000399494 METTL24Q5JXM2 366 aa35.77■■■■□ 3.32
HMGB1-205ENST00000399494 PDE8BO95263 885 aa35.76■■■■□ 3.32
HMGB1-205ENST00000399494 CRHR2Q13324 411 aa35.76■■■■□ 3.32
HMGB1-205ENST00000399494 PPP1R3FQ6ZSY5 799 aaPredicted RBP35.76■■■■□ 3.32
HMGB1-205ENST00000399494 OPTNQ96CV9 577 aa35.76■■■■□ 3.32
HMGB1-205ENST00000399494 TMEM39BQ9GZU3 492 aa35.76■■■■□ 3.32
HMGB1-205ENST00000399494 HDLBPQ00341 1268 aaKnown RBP35.75■■■■□ 3.31
HMGB1-205ENST00000399494 CHAF1AQ13111 956 aaPredicted RBP35.75■■■■□ 3.31
HMGB1-205ENST00000399494 CAVIN4Q5BKX8 364 aa35.75■■■■□ 3.31
HMGB1-205ENST00000399494 MS4A4AQ96JQ5 239 aa35.75■■■■□ 3.31
HMGB1-205ENST00000399494 TNNI2P48788 182 aa35.74■■■■□ 3.31
HMGB1-205ENST00000399494 TBC1D22AQ8WUA7 517 aa35.74■■■■□ 3.31
HMGB1-205ENST00000399494 USP44Q9H0E7 712 aa35.74■■■■□ 3.31
HMGB1-205ENST00000399494 PTPRCP08575 1304 aa35.74■■■■□ 3.31
HMGB1-205ENST00000399494 ARAP2Q8WZ64 1704 aa35.74■■■■□ 3.31
HMGB1-205ENST00000399494 PRPF38BQ5VTL8 546 aaKnown RBP35.73■■■■□ 3.31
HMGB1-205ENST00000399494 KLHDC4Q8TBB5 520 aa35.73■■■■□ 3.31
HMGB1-205ENST00000399494 ERO1AQ96HE7 468 aa35.73■■■■□ 3.31
HMGB1-205ENST00000399494 FRAT2O75474 233 aaPredicted RBP35.72■■■■□ 3.31
HMGB1-205ENST00000399494 BCAMP50895 628 aa35.72■■■■□ 3.31
HMGB1-205ENST00000399494 MAP3K9P80192 1104 aa35.72■■■■□ 3.31
HMGB1-205ENST00000399494 MRIQ9BWK5 157 aa35.72■■■■□ 3.31
HMGB1-205ENST00000399494 CD99L2Q8TCZ2 262 aa35.71■■■■□ 3.31
HMGB1-205ENST00000399494 CNKSR2Q8WXI2 1034 aa35.71■■■■□ 3.31
HMGB1-205ENST00000399494 SSH1Q8WYL5 1049 aa35.71■■■■□ 3.31
HMGB1-205ENST00000399494 OTOFQ9HC10 1997 aa35.71■■■■□ 3.31
HMGB1-205ENST00000399494 CT47B1P0C2W7 299 aaPredicted RBP35.7■■■■□ 3.31
HMGB1-205ENST00000399494 PTPN22Q9Y2R2 807 aa35.7■■■■□ 3.31
HMGB1-205ENST00000399494 VGLL4Q14135 290 aa35.69■■■■□ 3.3
HMGB1-205ENST00000399494 DDX55Q8NHQ9 600 aaKnown RBP eCLIP35.69■■■■□ 3.3
HMGB1-205ENST00000399494 TEKT1Q969V4 418 aa35.69■■■■□ 3.3
HMGB1-205ENST00000399494 ZBED9Q6R2W3 1325 aa35.68■■■■□ 3.3
HMGB1-205ENST00000399494 FGFR2P21802 821 aa35.68■■■■□ 3.3
HMGB1-205ENST00000399494 SP3Q02447 781 aa35.68■■■■□ 3.3
HMGB1-205ENST00000399494 CACNB3P54284 484 aa35.67■■■■□ 3.3
HMGB1-205ENST00000399494 INTS3Q68E01 1043 aaKnown RBP35.67■■■■□ 3.3
HMGB1-205ENST00000399494 BRI3BPQ8WY22 251 aa35.67■■■■□ 3.3
HMGB1-205ENST00000399494 ZDHHC15Q96MV8 337 aa35.67■■■■□ 3.3
HMGB1-205ENST00000399494 CAP1Q01518 475 aa35.66■■■■□ 3.3
HMGB1-205ENST00000399494 ALDH1L2Q3SY69 923 aa35.66■■■■□ 3.3
HMGB1-205ENST00000399494 HTTP42858 3142 aa35.66■■■■□ 3.3
HMGB1-205ENST00000399494 GTF2A2P52657 109 aa35.65■■■■□ 3.3
HMGB1-205ENST00000399494 APOBEC3HQ6NTF7 200 aaKnown RBP35.65■■■■□ 3.3
HMGB1-205ENST00000399494 EFCC1Q9HA90 598 aa35.65■■■■□ 3.3
HMGB1-205ENST00000399494 SMC4Q9NTJ3 1288 aa35.65■■■■□ 3.3
HMGB1-205ENST00000399494 SUGT1Q9Y2Z0 365 aa35.65■■■■□ 3.3
HMGB1-205ENST00000399494 CSADQ9Y600 493 aa35.65■■■■□ 3.3
HMGB1-205ENST00000399494 KIF16BQ96L93 1317 aa35.64■■■■□ 3.3
HMGB1-205ENST00000399494 IFIT1P09914 478 aaKnown RBP35.64■■■■□ 3.3
HMGB1-205ENST00000399494 RFX5P48382 616 aaPredicted RBP35.64■■■■□ 3.3
HMGB1-205ENST00000399494 PUM3Q15397 648 aaKnown RBP35.64■■■■□ 3.3
HMGB1-205ENST00000399494 CCL15-CCL14A0A0B4J2E2 113 aa35.63■■■■□ 3.29
HMGB1-205ENST00000399494 CCL15Q16663 113 aa35.63■■■■□ 3.29
HMGB1-205ENST00000399494 FAM83AQ86UY5 434 aa35.63■■■■□ 3.29
HMGB1-205ENST00000399494 POTEFA5A3E0 1075 aa35.62■■■■□ 3.29
HMGB1-205ENST00000399494 FKBP1CQ5VVH2 108 aa35.62■■■■□ 3.29
HMGB1-205ENST00000399494 EYA2O00167 538 aa35.61■■■■□ 3.29
HMGB1-205ENST00000399494 HHIPL2Q6UWX4 724 aa35.61■■■■□ 3.29
HMGB1-205ENST00000399494 OTUD5Q96G74 571 aa35.61■■■■□ 3.29
HMGB1-205ENST00000399494 TAF1CQ15572 869 aaPredicted RBP35.6■■■■□ 3.29
HMGB1-205ENST00000399494 FAM43AQ8N2R8 423 aa35.6■■■■□ 3.29
HMGB1-205ENST00000399494 ZFYVE28Q9HCC9 887 aa35.6■■■■□ 3.29
HMGB1-205ENST00000399494 TMOD2Q9NZR1 351 aa35.6■■■■□ 3.29
HMGB1-205ENST00000399494 MAST3O60307 1309 aa35.59■■■■□ 3.29
HMGB1-205ENST00000399494 SPDYE5A6NIY4 337 aa35.59■■■■□ 3.29
HMGB1-205ENST00000399494 SNCAIPQ9Y6H5 919 aa35.59■■■■□ 3.29
HMGB1-205ENST00000399494 LPIN2Q92539 896 aa35.58■■■■□ 3.29
HMGB1-205ENST00000399494 ARMC5Q96C12 935 aa35.58■■■■□ 3.29
HMGB1-205ENST00000399494 ATG9AQ7Z3C6 839 aa35.57■■■■□ 3.28
HMGB1-205ENST00000399494 ERO1BQ86YB8 467 aa35.57■■■■□ 3.28
HMGB1-205ENST00000399494 ZKSCAN4Q969J2 545 aaPredicted RBP35.57■■■■□ 3.28
HMGB1-205ENST00000399494 SLC5A1P13866 664 aa35.56■■■■□ 3.28
HMGB1-205ENST00000399494 WDR66Q8TBY9 1149 aa35.56■■■■□ 3.28
HMGB1-205ENST00000399494 HOOK2Q96ED9 719 aa35.56■■■■□ 3.28
HMGB1-205ENST00000399494 WRNIP1Q96S55 665 aa35.56■■■■□ 3.28
HMGB1-205ENST00000399494 PCDH10Q9P2E7 1040 aa35.55■■■■□ 3.28
HMGB1-205ENST00000399494 CETPP11597 493 aa35.54■■■■□ 3.28
HMGB1-205ENST00000399494 IRF6O14896 467 aa35.52■■■■□ 3.28
HMGB1-205ENST00000399494 RARSP54136 660 aaKnown RBP35.52■■■■□ 3.28
HMGB1-205ENST00000399494 ARHGEF6Q15052 776 aa35.52■■■■□ 3.28
HMGB1-205ENST00000399494 CENPFP49454 3210 aa35.52■■■■□ 3.28
HMGB1-205ENST00000399494 DCAF15Q66K64 600 aa35.51■■■■□ 3.28
HMGB1-205ENST00000399494 MIGA2Q7L4E1 593 aa35.51■■■■□ 3.28
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms