RNA–Protein interactions for RNA: ENST00000397617.7

PTPRD-206, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 5 BASIC

Gene PTPRD, Length 8,248 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-206ENST00000397617 NEMFO60524 1076 aa6.87□□□□□ -1.31
PTPRD-206ENST00000397617 BAG3O95817 575 aa6.87□□□□□ -1.31
PTPRD-206ENST00000397617 MB21D2Q8IYB1 491 aaPredicted RBP6.87□□□□□ -1.31
PTPRD-206ENST00000397617 ARPP21Q9UBL0 812 aaPredicted RBP6.87□□□□□ -1.31
PTPRD-206ENST00000397617 C4AP0C0L4 1744 aa6.87□□□□□ -1.31
PTPRD-206ENST00000397617 C4BP0C0L5 1744 aa6.87□□□□□ -1.31
PTPRD-206ENST00000397617 TNRC6CQ9HCJ0 1690 aaKnown RBP6.87□□□□□ -1.31
PTPRD-206ENST00000397617 ZNF213O14771 459 aa6.86□□□□□ -1.31
PTPRD-206ENST00000397617 RBM42Q9BTD8 480 aaKnown RBP6.86□□□□□ -1.31
PTPRD-206ENST00000397617 PLIN4Q96Q06 1357 aa6.86□□□□□ -1.31
PTPRD-206ENST00000397617 FGD1P98174 961 aa6.86□□□□□ -1.31
PTPRD-206ENST00000397617 TTC39AQ5SRH9 613 aa6.86□□□□□ -1.31
PTPRD-206ENST00000397617 ZDHHC9Q9Y397 364 aa6.86□□□□□ -1.31
PTPRD-206ENST00000397617 UBR3Q6ZT12 1888 aa6.86□□□□□ -1.31
PTPRD-206ENST00000397617 GPAA1O43292 621 aa6.86□□□□□ -1.31
PTPRD-206ENST00000397617 DEKP35659 375 aaKnown RBP6.86□□□□□ -1.31
PTPRD-206ENST00000397617 AKNAD1Q5T1N1 836 aa6.86□□□□□ -1.31
PTPRD-206ENST00000397617 SYNE3Q6ZMZ3 975 aa6.86□□□□□ -1.31
PTPRD-206ENST00000397617 AIDAQ96BJ3 306 aa6.86□□□□□ -1.31
PTPRD-206ENST00000397617 CCDC8Q9H0W5 538 aaPredicted RBP6.86□□□□□ -1.31
PTPRD-206ENST00000397617 NIP7Q9Y221 180 aaKnown RBP eCLIP6.86□□□□□ -1.31
PTPRD-206ENST00000397617 LRRC37AA6NMS7 1700 aa6.86□□□□□ -1.31
PTPRD-206ENST00000397617 UBN2Q6ZU65 1347 aa6.86□□□□□ -1.31
PTPRD-206ENST00000397617 NEUROD6Q96NK8 337 aa6.86□□□□□ -1.31
PTPRD-206ENST00000397617 GINM1Q9NU53 330 aa6.86□□□□□ -1.31
PTPRD-206ENST00000397617 PATL2C9JE40 543 aaKnown RBP6.86□□□□□ -1.31
PTPRD-206ENST00000397617 NASPP49321 788 aaPredicted RBP6.86□□□□□ -1.31
PTPRD-206ENST00000397617 DDX46Q7L014 1031 aaKnown RBP6.86□□□□□ -1.31
PTPRD-206ENST00000397617 ZNF579Q8NAF0 562 aaKnown RBP6.86□□□□□ -1.31
PTPRD-206ENST00000397617 CALML3P27482 149 aa6.86□□□□□ -1.31
PTPRD-206ENST00000397617 LRSAM1Q6UWE0 723 aa6.86□□□□□ -1.31
PTPRD-206ENST00000397617 PRAMEF22A3QJZ6 481 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 TULP1O00294 542 aaPredicted RBP6.85□□□□□ -1.31
PTPRD-206ENST00000397617 GOLIM4O00461 696 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 FKBP1CQ5VVH2 108 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 IQCA1Q86XH1 822 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 NAPBQ9H115 298 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 RBM28Q9NW13 759 aaKnown RBP6.85□□□□□ -1.31
PTPRD-206ENST00000397617 ESYT2A0FGR8 921 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 SPATA5Q8NB90 893 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 HOOK1Q9UJC3 728 aaKnown RBP6.85□□□□□ -1.31
PTPRD-206ENST00000397617 USP21Q9UK80 565 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 ATP2B4P23634 1241 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 PPP1R2P41236 205 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 AMOTL1Q8IY63 956 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 FAM43AQ8N2R8 423 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 RTEL1Q9NZ71 1219 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 CPLX1O14810 134 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 SAFBQ15424 915 aaKnown RBP eCLIP6.85□□□□□ -1.31
PTPRD-206ENST00000397617 KANK3Q6NY19 840 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 PKNOX2Q96KN3 472 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 TRIML1Q8N9V2 468 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 MAGEF1Q9HAY2 307 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 A0A1B0GUL6 1792 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 NRXN2Q9P2S2 1712 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 DDAH1O94760 285 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 CCDC192P0DO97 292 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 KIF5BP33176 963 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 GRAPQ13588 217 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 WASHC4Q2M389 1173 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 SLC9C2Q5TAH2 1124 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 GRAPLQ8TC17 118 aaPredicted RBP6.85□□□□□ -1.31
PTPRD-206ENST00000397617 GREM2Q9H772 168 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 NRDCO43847 1150 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 FGAP02671 866 aa6.85□□□□□ -1.31
PTPRD-206ENST00000397617 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.85□□□□□ -1.31
PTPRD-206ENST00000397617 DDX17Q92841 729 aaKnown RBP6.85□□□□□ -1.31
PTPRD-206ENST00000397617 CCNL1Q9UK58 526 aaPredicted RBP6.85□□□□□ -1.31
PTPRD-206ENST00000397617 GOLGA6L4A6NEF3 574 aa6.84□□□□□ -1.31
PTPRD-206ENST00000397617 CD2BP2O95400 341 aaKnown RBP6.84□□□□□ -1.31
PTPRD-206ENST00000397617 UBE2Q2Q8WVN8 375 aa6.84□□□□□ -1.31
PTPRD-206ENST00000397617 TCP11L1Q9NUJ3 509 aa6.84□□□□□ -1.31
PTPRD-206ENST00000397617 E7EWF7 191 aa6.84□□□□□ -1.31
PTPRD-206ENST00000397617 NOVP48745 357 aa6.84□□□□□ -1.31
PTPRD-206ENST00000397617 ITPK1Q13572 414 aa6.84□□□□□ -1.31
PTPRD-206ENST00000397617 NBPF5PQ86XG9 351 aaPredicted RBP6.84□□□□□ -1.31
PTPRD-206ENST00000397617 FAM200AQ8TCP9 573 aa6.84□□□□□ -1.31
PTPRD-206ENST00000397617 TRAPPC3LQ5T215 181 aa6.84□□□□□ -1.31
PTPRD-206ENST00000397617 NAT10Q9H0A0 1025 aaKnown RBP6.84□□□□□ -1.31
PTPRD-206ENST00000397617 SNED1Q8TER0 1413 aa6.84□□□□□ -1.31
PTPRD-206ENST00000397617 EYA3Q99504 573 aa6.84□□□□□ -1.31
PTPRD-206ENST00000397617 CRNKL1Q9BZJ0 848 aaKnown RBP6.84□□□□□ -1.31
PTPRD-206ENST00000397617 GRPEL1Q9HAV7 217 aa6.84□□□□□ -1.31
PTPRD-206ENST00000397617 U2AF2P26368 475 aaKnown RBP eCLIP6.84□□□□□ -1.32
PTPRD-206ENST00000397617 MCAMP43121 646 aa6.84□□□□□ -1.32
PTPRD-206ENST00000397617 TIMM10P62072 90 aa6.84□□□□□ -1.32
PTPRD-206ENST00000397617 PDE4BQ07343 736 aa6.84□□□□□ -1.32
PTPRD-206ENST00000397617 SKAP1Q86WV1 359 aa6.84□□□□□ -1.32
PTPRD-206ENST00000397617 FAM227BQ96M60 508 aa6.84□□□□□ -1.32
PTPRD-206ENST00000397617 FOXP1Q9H334 677 aaPredicted RBP6.84□□□□□ -1.32
PTPRD-206ENST00000397617 CHMP3Q9Y3E7 222 aa6.84□□□□□ -1.32
PTPRD-206ENST00000397617 MYH6P13533 1939 aa6.84□□□□□ -1.32
PTPRD-206ENST00000397617 PTH1RQ03431 593 aa6.83□□□□□ -1.32
PTPRD-206ENST00000397617 SOGA3Q5TF21 947 aa6.83□□□□□ -1.32
PTPRD-206ENST00000397617 PODNQ7Z5L7 613 aa6.83□□□□□ -1.32
PTPRD-206ENST00000397617 CCDC125Q86Z20 511 aa6.83□□□□□ -1.32
PTPRD-206ENST00000397617 CNBD1Q8NA66 436 aa6.83□□□□□ -1.32
PTPRD-206ENST00000397617 CCDC12Q8WUD4 166 aaPredicted RBP6.83□□□□□ -1.32
PTPRD-206ENST00000397617 ADALQ6DHV7 355 aa6.83□□□□□ -1.32
PTPRD-206ENST00000397617 CCDC17Q96LX7 622 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms