RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 ASAP1Q9ULH1 1129 aa23.97■■□□□ 1.43
CLK3-202ENST00000395066 AKAP2Q9Y2D5 859 aa23.97■■□□□ 1.43
CLK3-202ENST00000395066 CPDO75976 1380 aa23.97■■□□□ 1.43
CLK3-202ENST00000395066 NEMFO60524 1076 aa23.97■■□□□ 1.43
CLK3-202ENST00000395066 METTL24Q5JXM2 366 aa23.97■■□□□ 1.43
CLK3-202ENST00000395066 CADPS2Q86UW7 1296 aa23.97■■□□□ 1.43
CLK3-202ENST00000395066 SYTL4Q96C24 671 aaPredicted RBP23.97■■□□□ 1.43
CLK3-202ENST00000395066 KIAA1468Q9P260 1216 aa23.97■■□□□ 1.43
CLK3-202ENST00000395066 PARP4Q9UKK3 1724 aaKnown RBP23.97■■□□□ 1.43
CLK3-202ENST00000395066 TBC1D10CQ8IV04 446 aa23.97■■□□□ 1.43
CLK3-202ENST00000395066 GREM2Q9H772 168 aa23.97■■□□□ 1.43
CLK3-202ENST00000395066 NOL12Q9UGY1 213 aaKnown RBP eCLIP23.97■■□□□ 1.43
CLK3-202ENST00000395066 V9GYY5 206 aaPredicted RBP23.97■■□□□ 1.43
CLK3-202ENST00000395066 MROH7-TTC4A0A0A0MT08 1334 aa23.96■■□□□ 1.43
CLK3-202ENST00000395066 UBE2Q2LH0YL09 131 aa23.96■■□□□ 1.43
CLK3-202ENST00000395066 RBM6P78332 1123 aaKnown RBP23.96■■□□□ 1.43
CLK3-202ENST00000395066 HLFQ16534 295 aa23.96■■□□□ 1.43
CLK3-202ENST00000395066 IL2RBP14784 551 aa23.96■■□□□ 1.43
CLK3-202ENST00000395066 CYB5R4Q7L1T6 521 aa23.96■■□□□ 1.43
CLK3-202ENST00000395066 WDHD1O75717 1129 aaPredicted RBP23.95■■□□□ 1.42
CLK3-202ENST00000395066 APPP05067 770 aa23.95■■□□□ 1.42
CLK3-202ENST00000395066 KIF23Q02241 960 aaPredicted RBP23.95■■□□□ 1.42
CLK3-202ENST00000395066 PHKBQ93100 1093 aa23.95■■□□□ 1.42
CLK3-202ENST00000395066 IDH1O75874 414 aaKnown RBP23.95■■□□□ 1.42
CLK3-202ENST00000395066 ZNF202O95125 648 aa23.95■■□□□ 1.42
CLK3-202ENST00000395066 SMC2O95347 1197 aa23.95■■□□□ 1.42
CLK3-202ENST00000395066 ZFYP08048 801 aaPredicted RBP23.95■■□□□ 1.42
CLK3-202ENST00000395066 SLC9C2Q5TAH2 1124 aa23.95■■□□□ 1.42
CLK3-202ENST00000395066 LDHAL6AQ6ZMR3 332 aa23.95■■□□□ 1.42
CLK3-202ENST00000395066 MYL10Q9BUA6 226 aa23.95■■□□□ 1.42
CLK3-202ENST00000395066 DDX41Q9UJV9 622 aaKnown RBP23.95■■□□□ 1.42
CLK3-202ENST00000395066 RIC1Q4ADV7 1423 aa23.94■■□□□ 1.42
CLK3-202ENST00000395066 SYNE3Q6ZMZ3 975 aa23.94■■□□□ 1.42
CLK3-202ENST00000395066 FBXL16Q8N461 479 aa23.94■■□□□ 1.42
CLK3-202ENST00000395066 XPO4Q9C0E2 1151 aaKnown RBP23.94■■□□□ 1.42
CLK3-202ENST00000395066 POLR3EQ9NVU0 708 aa23.94■■□□□ 1.42
CLK3-202ENST00000395066 SPEF2Q9C093 1822 aa23.94■■□□□ 1.42
CLK3-202ENST00000395066 A0A1W2PQ27 194 aa23.94■■□□□ 1.42
CLK3-202ENST00000395066 A0A1W2PQ64 194 aa23.94■■□□□ 1.42
CLK3-202ENST00000395066 A0A1W2PQD8 194 aa23.94■■□□□ 1.42
CLK3-202ENST00000395066 IGSF3O75054 1194 aa23.94■■□□□ 1.42
CLK3-202ENST00000395066 PFKFB1P16118 471 aa23.94■■□□□ 1.42
CLK3-202ENST00000395066 ZRSR1Q15695 479 aaKnown RBP23.94■■□□□ 1.42
CLK3-202ENST00000395066 KCNG4Q8TDN1 519 aa23.94■■□□□ 1.42
CLK3-202ENST00000395066 PIH1D3Q9NQM4 214 aaKnown RBP23.94■■□□□ 1.42
CLK3-202ENST00000395066 IFNKQ9P0W0 207 aa23.94■■□□□ 1.42
CLK3-202ENST00000395066 ITGA6P23229 1130 aa23.93■■□□□ 1.42
CLK3-202ENST00000395066 ANO1Q5XXA6 986 aa23.93■■□□□ 1.42
CLK3-202ENST00000395066 NAT10Q9H0A0 1025 aaKnown RBP23.93■■□□□ 1.42
CLK3-202ENST00000395066 DHX16O60231 1041 aaKnown RBP23.93■■□□□ 1.42
CLK3-202ENST00000395066 SLC3A2P08195 630 aaKnown RBP23.93■■□□□ 1.42
CLK3-202ENST00000395066 PTPN14Q15678 1187 aa23.93■■□□□ 1.42
CLK3-202ENST00000395066 LRRFIP1Q32MZ4 808 aaKnown RBP23.93■■□□□ 1.42
CLK3-202ENST00000395066 AXDND1Q5T1B0 1012 aaPredicted RBP23.93■■□□□ 1.42
CLK3-202ENST00000395066 BRINP3Q76B58 766 aa23.93■■□□□ 1.42
CLK3-202ENST00000395066 MICU3Q86XE3 530 aa23.93■■□□□ 1.42
CLK3-202ENST00000395066 TMOD3Q9NYL9 352 aa23.93■■□□□ 1.42
CLK3-202ENST00000395066 PCCAP05165 728 aaPredicted RBP23.92■■□□□ 1.42
CLK3-202ENST00000395066 PTPN21Q16825 1174 aa23.92■■□□□ 1.42
CLK3-202ENST00000395066 KIF6Q6ZMV9 814 aa23.92■■□□□ 1.42
CLK3-202ENST00000395066 MYO5AQ9Y4I1 1855 aaKnown RBP23.92■■□□□ 1.42
CLK3-202ENST00000395066 B4E1Z4 1266 aa23.92■■□□□ 1.42
CLK3-202ENST00000395066 YEATS4O95619 227 aa23.92■■□□□ 1.42
CLK3-202ENST00000395066 CDC27P30260 824 aa23.92■■□□□ 1.42
CLK3-202ENST00000395066 NYAP1Q6ZVC0 841 aa23.92■■□□□ 1.42
CLK3-202ENST00000395066 TMC6Q7Z403 805 aa23.92■■□□□ 1.42
CLK3-202ENST00000395066 HELBQ8NG08 1087 aaPredicted RBP23.92■■□□□ 1.42
CLK3-202ENST00000395066 RIPOR2Q9Y4F9 1068 aa23.92■■□□□ 1.42
CLK3-202ENST00000395066 CSF1RP07333 972 aa23.91■■□□□ 1.42
CLK3-202ENST00000395066 NKX1-1Q15270 411 aaPredicted RBP23.91■■□□□ 1.42
CLK3-202ENST00000395066 ZBTB38Q8NAP3 1195 aaPredicted RBP23.91■■□□□ 1.42
CLK3-202ENST00000395066 CNNM1Q9NRU3 951 aa23.91■■□□□ 1.42
CLK3-202ENST00000395066 COL5A2P05997 1499 aaPredicted RBP23.91■■□□□ 1.42
CLK3-202ENST00000395066 SNAP23O00161 211 aa23.91■■□□□ 1.42
CLK3-202ENST00000395066 ALG1Q9BT22 464 aa23.91■■□□□ 1.42
CLK3-202ENST00000395066 LMOD1P29536 600 aaPredicted RBP23.9■■□□□ 1.42
CLK3-202ENST00000395066 WWC3Q9ULE0 1092 aa23.9■■□□□ 1.42
CLK3-202ENST00000395066 KAT6BQ8WYB5 2073 aa23.9■■□□□ 1.42
CLK3-202ENST00000395066 ADD2P35612 726 aa23.9■■□□□ 1.42
CLK3-202ENST00000395066 BRAPQ7Z569 592 aa23.9■■□□□ 1.42
CLK3-202ENST00000395066 CCAR2Q8N163 923 aaKnown RBP23.9■■□□□ 1.42
CLK3-202ENST00000395066 TTLL11Q8NHH1 800 aa23.9■■□□□ 1.42
CLK3-202ENST00000395066 KIF18AQ8NI77 898 aa23.9■■□□□ 1.42
CLK3-202ENST00000395066 MORC2Q9Y6X9 1032 aaPredicted RBP23.9■■□□□ 1.42
CLK3-202ENST00000395066 TNS2Q63HR2 1409 aa23.89■■□□□ 1.42
CLK3-202ENST00000395066 PHKA1P46020 1223 aa23.89■■□□□ 1.42
CLK3-202ENST00000395066 METAP2P50579 478 aaKnown RBP eCLIP23.89■■□□□ 1.42
CLK3-202ENST00000395066 HSPA2P54652 639 aa23.89■■□□□ 1.42
CLK3-202ENST00000395066 GABPB1Q06547 395 aaPredicted RBP23.89■■□□□ 1.42
CLK3-202ENST00000395066 VPS37DQ86XT2 251 aa23.89■■□□□ 1.42
CLK3-202ENST00000395066 PIGBQ92521 554 aa23.89■■□□□ 1.42
CLK3-202ENST00000395066 CLIC6Q96NY7 704 aa23.89■■□□□ 1.42
CLK3-202ENST00000395066 ZNF532Q9HCE3 1301 aa23.89■■□□□ 1.41
CLK3-202ENST00000395066 ATP1A3P13637 1013 aa23.89■■□□□ 1.41
CLK3-202ENST00000395066 TRDNQ13061 729 aa23.89■■□□□ 1.41
CLK3-202ENST00000395066 ARMCX5Q6P1M9 558 aa23.89■■□□□ 1.41
CLK3-202ENST00000395066 TICAM2Q86XR7 235 aa23.89■■□□□ 1.41
CLK3-202ENST00000395066 ZNF215Q9UL58 517 aaPredicted RBP23.89■■□□□ 1.41
CLK3-202ENST00000395066 ANGEL1Q9UNK9 670 aaKnown RBP23.89■■□□□ 1.41
CLK3-202ENST00000395066 STK11IPQ8N1F8 1099 aa23.88■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms