RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 HSP90AB4PQ58FF6 505 aa16.89■□□□□ 0.29
VPS9D1-201ENST00000389386 CCDC91Q7Z6B0 441 aa16.89■□□□□ 0.29
VPS9D1-201ENST00000389386 KIFC2Q96AC6 838 aa16.89■□□□□ 0.29
VPS9D1-201ENST00000389386 PXDNLA1KZ92 1463 aa16.88■□□□□ 0.29
VPS9D1-201ENST00000389386 ME1P48163 572 aa16.88■□□□□ 0.29
VPS9D1-201ENST00000389386 NAA16Q6N069 864 aaPredicted RBP16.88■□□□□ 0.29
VPS9D1-201ENST00000389386 N4BP2Q86UW6 1770 aaPredicted RBP16.88■□□□□ 0.29
VPS9D1-201ENST00000389386 ZRSR1Q15695 479 aaKnown RBP16.88■□□□□ 0.29
VPS9D1-201ENST00000389386 ATL3Q6DD88 541 aa16.88■□□□□ 0.29
VPS9D1-201ENST00000389386 TMEM139Q8IV31 216 aa16.88■□□□□ 0.29
VPS9D1-201ENST00000389386 CCDC172P0C7W6 258 aa16.87■□□□□ 0.29
VPS9D1-201ENST00000389386 LMOD1P29536 600 aaPredicted RBP16.87■□□□□ 0.29
VPS9D1-201ENST00000389386 USP5P45974 858 aa16.87■□□□□ 0.29
VPS9D1-201ENST00000389386 AIMP1Q12904 312 aaKnown RBP16.87■□□□□ 0.29
VPS9D1-201ENST00000389386 EFCAB13Q8IY85 973 aa16.87■□□□□ 0.29
VPS9D1-201ENST00000389386 MRPS27Q92552 414 aaKnown RBP16.87■□□□□ 0.29
VPS9D1-201ENST00000389386 DHX58Q96C10 678 aa16.87■□□□□ 0.29
VPS9D1-201ENST00000389386 CEP89Q96ST8 783 aa16.87■□□□□ 0.29
VPS9D1-201ENST00000389386 HSD3B7Q9H2F3 369 aa16.87■□□□□ 0.29
VPS9D1-201ENST00000389386 CEP83Q9Y592 693 aa16.87■□□□□ 0.29
VPS9D1-201ENST00000389386 ATP1A3P13637 1013 aa16.87■□□□□ 0.29
VPS9D1-201ENST00000389386 EP400NLQ6ZTU2 488 aa16.87■□□□□ 0.29
VPS9D1-201ENST00000389386 SMARCC2Q8TAQ2 1214 aa16.87■□□□□ 0.29
VPS9D1-201ENST00000389386 ZNF396Q96N95 335 aaPredicted RBP16.87■□□□□ 0.29
VPS9D1-201ENST00000389386 CXorf56Q9H5V9 222 aa16.87■□□□□ 0.29
VPS9D1-201ENST00000389386 L1RE1Q9UN81 338 aa16.87■□□□□ 0.29
VPS9D1-201ENST00000389386 GOLGA6L9A6NEM1 432 aa16.86■□□□□ 0.29
VPS9D1-201ENST00000389386 ARHGAP6O43182 974 aa16.86■□□□□ 0.29
VPS9D1-201ENST00000389386 NLRP12P59046 1061 aa16.86■□□□□ 0.29
VPS9D1-201ENST00000389386 GOLGA8FQ08AF8 430 aa16.86■□□□□ 0.29
VPS9D1-201ENST00000389386 GOLGA8DPQ0D2H9 430 aa16.86■□□□□ 0.29
VPS9D1-201ENST00000389386 AMOTQ4VCS5 1084 aa16.86■□□□□ 0.29
VPS9D1-201ENST00000389386 BABAM1Q9NWV8 329 aa16.86■□□□□ 0.29
VPS9D1-201ENST00000389386 RAB21Q9UL25 225 aa16.86■□□□□ 0.29
VPS9D1-201ENST00000389386 MYH15Q9Y2K3 1946 aa16.86■□□□□ 0.29
VPS9D1-201ENST00000389386 PHRF1Q9P1Y6 1649 aaKnown RBP16.86■□□□□ 0.29
VPS9D1-201ENST00000389386 NEDD4P46934 1319 aa16.86■□□□□ 0.29
VPS9D1-201ENST00000389386 EIF3JO75822 258 aaKnown RBP16.86■□□□□ 0.29
VPS9D1-201ENST00000389386 PIP4K2AP48426 406 aaPredicted RBP16.86■□□□□ 0.29
VPS9D1-201ENST00000389386 CLASRPQ8N2M8 674 aaKnown RBP16.86■□□□□ 0.29
VPS9D1-201ENST00000389386 DNAAF4Q8WXU2 420 aa16.86■□□□□ 0.29
VPS9D1-201ENST00000389386 DPF2Q92785 391 aa16.86■□□□□ 0.29
VPS9D1-201ENST00000389386 ANKZF1Q9H8Y5 726 aa16.86■□□□□ 0.29
VPS9D1-201ENST00000389386 STRN4Q9NRL3 753 aa16.86■□□□□ 0.29
VPS9D1-201ENST00000389386 PCDHA7Q9UN72 937 aa16.86■□□□□ 0.29
VPS9D1-201ENST00000389386 A0A1B0GVL5 298 aa16.85■□□□□ 0.29
VPS9D1-201ENST00000389386 HIP1O00291 1037 aa16.85■□□□□ 0.29
VPS9D1-201ENST00000389386 NDUFA8P51970 172 aa16.85■□□□□ 0.29
VPS9D1-201ENST00000389386 ROBO1Q9Y6N7 1651 aa16.85■□□□□ 0.29
VPS9D1-201ENST00000389386 BIN1O00499 593 aa16.85■□□□□ 0.29
VPS9D1-201ENST00000389386 IKBKBO14920 756 aa16.85■□□□□ 0.29
VPS9D1-201ENST00000389386 TADA2BQ86TJ2 420 aa16.85■□□□□ 0.29
VPS9D1-201ENST00000389386 ERC1Q8IUD2 1116 aa16.85■□□□□ 0.29
VPS9D1-201ENST00000389386 HMG20BQ9P0W2 317 aa16.85■□□□□ 0.29
VPS9D1-201ENST00000389386 A0A0D9SFI3 127 aa16.84■□□□□ 0.29
VPS9D1-201ENST00000389386 UBASH3AP57075 661 aa16.84■□□□□ 0.29
VPS9D1-201ENST00000389386 OS9Q13438 667 aaPredicted RBP16.84■□□□□ 0.29
VPS9D1-201ENST00000389386 CWF19L2Q2TBE0 894 aaKnown RBP16.84■□□□□ 0.29
VPS9D1-201ENST00000389386 VSTM4Q8IW00 320 aa16.84■□□□□ 0.29
VPS9D1-201ENST00000389386 GPATCH3Q96I76 525 aa16.84■□□□□ 0.29
VPS9D1-201ENST00000389386 CACNA1FO60840 1977 aa16.84■□□□□ 0.29
VPS9D1-201ENST00000389386 A0A087WUV0 522 aaPredicted RBP16.84■□□□□ 0.29
VPS9D1-201ENST00000389386 A0A1W2PQ27 194 aa16.84■□□□□ 0.29
VPS9D1-201ENST00000389386 A0A1W2PQ64 194 aa16.84■□□□□ 0.29
VPS9D1-201ENST00000389386 A0A1W2PQD8 194 aa16.84■□□□□ 0.29
VPS9D1-201ENST00000389386 PPFIA4O75335 1185 aa16.84■□□□□ 0.29
VPS9D1-201ENST00000389386 BEND3Q5T5X7 828 aa16.84■□□□□ 0.29
VPS9D1-201ENST00000389386 ADALQ6DHV7 355 aa16.84■□□□□ 0.29
VPS9D1-201ENST00000389386 BANK1Q8NDB2 785 aa16.84■□□□□ 0.29
VPS9D1-201ENST00000389386 RAPGEF4Q8WZA2 1011 aa16.84■□□□□ 0.29
VPS9D1-201ENST00000389386 FOSBP53539 338 aa16.83■□□□□ 0.29
VPS9D1-201ENST00000389386 CHMP4BP1P59074 171 aa16.83■□□□□ 0.29
VPS9D1-201ENST00000389386 SRGAP1Q7Z6B7 1085 aa16.83■□□□□ 0.29
VPS9D1-201ENST00000389386 CNNM3Q8NE01 707 aa16.83■□□□□ 0.29
VPS9D1-201ENST00000389386 LLPHQ9BRT6 129 aaKnown RBP16.83■□□□□ 0.29
VPS9D1-201ENST00000389386 DONSONQ9NYP3 566 aa16.83■□□□□ 0.29
VPS9D1-201ENST00000389386 MAP3K2Q9Y2U5 619 aa16.83■□□□□ 0.29
VPS9D1-201ENST00000389386 PATL2C9JE40 543 aaKnown RBP16.83■□□□□ 0.28
VPS9D1-201ENST00000389386 CBFA2T2O43439 604 aa16.83■□□□□ 0.28
VPS9D1-201ENST00000389386 SCRN1Q12765 414 aa16.83■□□□□ 0.28
VPS9D1-201ENST00000389386 ILDR1Q86SU0 546 aaPredicted RBP16.83■□□□□ 0.28
VPS9D1-201ENST00000389386 MSANTD4Q8NCY6 345 aa16.83■□□□□ 0.28
VPS9D1-201ENST00000389386 FAM71BQ8TC56 605 aa16.83■□□□□ 0.28
VPS9D1-201ENST00000389386 PNKPQ96T60 521 aa16.83■□□□□ 0.28
VPS9D1-201ENST00000389386 ZSWIM4Q9H7M6 989 aa16.83■□□□□ 0.28
VPS9D1-201ENST00000389386 ABCB6Q9NP58 842 aa16.83■□□□□ 0.28
VPS9D1-201ENST00000389386 SLC3A2P08195 630 aaKnown RBP16.83■□□□□ 0.28
VPS9D1-201ENST00000389386 Q6ZUG5 572 aa16.83■□□□□ 0.28
VPS9D1-201ENST00000389386 SUGCTQ9HAC7 445 aa16.83■□□□□ 0.28
VPS9D1-201ENST00000389386 UBAP1LF5GYI3 381 aa16.82■□□□□ 0.28
VPS9D1-201ENST00000389386 CUTAO60888 179 aa16.82■□□□□ 0.28
VPS9D1-201ENST00000389386 MYL6BP14649 208 aa16.82■□□□□ 0.28
VPS9D1-201ENST00000389386 NSUN7Q8NE18 718 aaKnown RBP16.82■□□□□ 0.28
VPS9D1-201ENST00000389386 BICC1Q9H694 974 aaKnown RBP16.82■□□□□ 0.28
VPS9D1-201ENST00000389386 MED23Q9ULK4 1368 aa16.82■□□□□ 0.28
VPS9D1-201ENST00000389386 POTEB2H3BUK9 544 aa16.82■□□□□ 0.28
VPS9D1-201ENST00000389386 ERLIN1O75477 346 aa16.82■□□□□ 0.28
VPS9D1-201ENST00000389386 TOP1P11387 765 aaKnown RBP16.82■□□□□ 0.28
VPS9D1-201ENST00000389386 DNAJC21Q5F1R6 531 aaKnown RBP16.82■□□□□ 0.28
VPS9D1-201ENST00000389386 WWC2Q6AWC2 1192 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms