RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 C7orf43Q8WVR3 580 aa14.82□□□□□ -0.04
CIITA-202ENST00000381835 MAP4K1Q92918 833 aa14.82□□□□□ -0.04
CIITA-202ENST00000381835 SGIP1Q9BQI5 828 aa14.82□□□□□ -0.04
CIITA-202ENST00000381835 CHD4Q14839 1912 aa14.81□□□□□ -0.04
CIITA-202ENST00000381835 VPS53Q5VIR6 699 aa14.81□□□□□ -0.04
CIITA-202ENST00000381835 RBM8AQ9Y5S9 174 aaKnown RBP14.81□□□□□ -0.04
CIITA-202ENST00000381835 PDS5AQ29RF7 1337 aaKnown RBP14.81□□□□□ -0.04
CIITA-202ENST00000381835 TCRBV5S4A2TA0A5A2 114 aa14.81□□□□□ -0.04
CIITA-202ENST00000381835 PTGER2P43116 358 aa14.81□□□□□ -0.04
CIITA-202ENST00000381835 TGFB2P61812 414 aa14.81□□□□□ -0.04
CIITA-202ENST00000381835 GPAA1O43292 621 aa14.8□□□□□ -0.04
CIITA-202ENST00000381835 IL1R1P14778 569 aa14.8□□□□□ -0.04
CIITA-202ENST00000381835 EYA3Q99504 573 aa14.8□□□□□ -0.04
CIITA-202ENST00000381835 CCDC88AQ3V6T2 1871 aa14.8□□□□□ -0.04
CIITA-202ENST00000381835 G3V3G9 751 aa14.8□□□□□ -0.04
CIITA-202ENST00000381835 PRDX5P30044 214 aa14.8□□□□□ -0.04
CIITA-202ENST00000381835 DOK7Q18PE1 504 aa14.8□□□□□ -0.04
CIITA-202ENST00000381835 DCAF8Q5TAQ9 597 aa14.8□□□□□ -0.04
CIITA-202ENST00000381835 WDR66Q8TBY9 1149 aa14.8□□□□□ -0.04
CIITA-202ENST00000381835 PIM2Q9P1W9 311 aa14.8□□□□□ -0.04
CIITA-202ENST00000381835 SRCAPQ6ZRS2 3230 aa14.79□□□□□ -0.04
CIITA-202ENST00000381835 HSPD1P10809 573 aaKnown RBP14.79□□□□□ -0.04
CIITA-202ENST00000381835 CYP7A1P22680 504 aa14.79□□□□□ -0.04
CIITA-202ENST00000381835 AIDAQ96BJ3 306 aa14.79□□□□□ -0.04
CIITA-202ENST00000381835 COA1Q9GZY4 146 aa14.79□□□□□ -0.04
CIITA-202ENST00000381835 KIAA1551Q9HCM1 1747 aa14.79□□□□□ -0.04
CIITA-202ENST00000381835 NECTIN1Q15223 517 aa14.78□□□□□ -0.04
CIITA-202ENST00000381835 CC2D2BQ6DHV5 1058 aa14.78□□□□□ -0.04
CIITA-202ENST00000381835 RASEFQ8IZ41 740 aa14.78□□□□□ -0.04
CIITA-202ENST00000381835 ANAPC15P60006 121 aa14.78□□□□□ -0.04
CIITA-202ENST00000381835 RABEP1Q15276 862 aa14.78□□□□□ -0.04
CIITA-202ENST00000381835 CREB3L3Q68CJ9 461 aa14.78□□□□□ -0.04
CIITA-202ENST00000381835 NAA16Q6N069 864 aaPredicted RBP14.78□□□□□ -0.04
CIITA-202ENST00000381835 MIGA1Q8NAN2 632 aa14.78□□□□□ -0.04
CIITA-202ENST00000381835 FBXW7Q969H0 707 aa14.78□□□□□ -0.04
CIITA-202ENST00000381835 SNX14Q9Y5W7 946 aa14.78□□□□□ -0.04
CIITA-202ENST00000381835 ZBTB22O15209 634 aa14.77□□□□□ -0.04
CIITA-202ENST00000381835 MECOMQ03112 1051 aa14.77□□□□□ -0.04
CIITA-202ENST00000381835 CCDC93Q567U6 631 aa14.77□□□□□ -0.04
CIITA-202ENST00000381835 ADGRA1Q86SQ6 560 aa14.77□□□□□ -0.04
CIITA-202ENST00000381835 ZGPATQ8N5A5 531 aaKnown RBP14.77□□□□□ -0.04
CIITA-202ENST00000381835 DSCC1Q9BVC3 393 aa14.77□□□□□ -0.04
CIITA-202ENST00000381835 MBD4O95243 580 aa14.77□□□□□ -0.05
CIITA-202ENST00000381835 GTF2IP78347 998 aa14.77□□□□□ -0.05
CIITA-202ENST00000381835 SPTY2D1Q68D10 685 aaPredicted RBP14.77□□□□□ -0.05
CIITA-202ENST00000381835 CLEC17AQ6ZS10 378 aa14.77□□□□□ -0.05
CIITA-202ENST00000381835 ZNF384Q8TF68 577 aa14.77□□□□□ -0.05
CIITA-202ENST00000381835 NSUN4Q96CB9 384 aaKnown RBP14.77□□□□□ -0.05
CIITA-202ENST00000381835 RTFDC1Q9BY42 306 aaPredicted RBP14.77□□□□□ -0.05
CIITA-202ENST00000381835 DBNDD1Q9H9R9 158 aa14.77□□□□□ -0.05
CIITA-202ENST00000381835 CD2APQ9Y5K6 639 aa14.77□□□□□ -0.05
CIITA-202ENST00000381835 DDX49Q9Y6V7 483 aaKnown RBP14.77□□□□□ -0.05
CIITA-202ENST00000381835 U3KPZ7 1027 aaPredicted RBP14.77□□□□□ -0.05
CIITA-202ENST00000381835 UTRNP46939 3433 aa14.77□□□□□ -0.05
CIITA-202ENST00000381835 SLC27A2O14975 620 aa14.76□□□□□ -0.05
CIITA-202ENST00000381835 BAG4O95429 457 aaKnown RBP14.76□□□□□ -0.05
CIITA-202ENST00000381835 LDHBP07195 334 aaKnown RBP14.76□□□□□ -0.05
CIITA-202ENST00000381835 ZKSCAN1P17029 563 aaPredicted RBP14.76□□□□□ -0.05
CIITA-202ENST00000381835 AOC3Q16853 763 aa14.76□□□□□ -0.05
CIITA-202ENST00000381835 DALRD3Q5D0E6 543 aaKnown RBP14.76□□□□□ -0.05
CIITA-202ENST00000381835 RNF20Q5VTR2 975 aa14.76□□□□□ -0.05
CIITA-202ENST00000381835 DZIP1Q86YF9 867 aaKnown RBP14.76□□□□□ -0.05
CIITA-202ENST00000381835 ARMT1Q9H993 441 aa14.76□□□□□ -0.05
CIITA-202ENST00000381835 SPON1Q9HCB6 807 aa14.76□□□□□ -0.05
CIITA-202ENST00000381835 SALL1Q9NSC2 1324 aa14.76□□□□□ -0.05
CIITA-202ENST00000381835 SNED1Q8TER0 1413 aa14.76□□□□□ -0.05
CIITA-202ENST00000381835 GRIK5Q16478 980 aa14.76□□□□□ -0.05
CIITA-202ENST00000381835 KLHL40Q2TBA0 621 aa14.76□□□□□ -0.05
CIITA-202ENST00000381835 MFSD14BQ5SR56 506 aa14.76□□□□□ -0.05
CIITA-202ENST00000381835 STRBPQ96SI9 672 aaKnown RBP14.76□□□□□ -0.05
CIITA-202ENST00000381835 BRCA1P38398 1863 aaKnown RBP14.76□□□□□ -0.05
CIITA-202ENST00000381835 FOXP2O15409 715 aa14.75□□□□□ -0.05
CIITA-202ENST00000381835 APPP05067 770 aa14.75□□□□□ -0.05
CIITA-202ENST00000381835 RTKN2Q8IZC4 609 aa14.75□□□□□ -0.05
CIITA-202ENST00000381835 LCORLQ8N3X6 602 aa14.75□□□□□ -0.05
CIITA-202ENST00000381835 SUPT20HQ8NEM7 779 aa14.75□□□□□ -0.05
CIITA-202ENST00000381835 ANP32BQ92688 251 aaKnown RBP14.75□□□□□ -0.05
CIITA-202ENST00000381835 UPF3BQ9BZI7 483 aaKnown RBP14.75□□□□□ -0.05
CIITA-202ENST00000381835 NASPP49321 788 aaPredicted RBP14.75□□□□□ -0.05
CIITA-202ENST00000381835 NEK4P51957 841 aa14.75□□□□□ -0.05
CIITA-202ENST00000381835 CCDC173Q0VFZ6 552 aa14.75□□□□□ -0.05
CIITA-202ENST00000381835 TTLL5Q6EMB2 1281 aa14.75□□□□□ -0.05
CIITA-202ENST00000381835 TAF6LQ9Y6J9 622 aa14.75□□□□□ -0.05
CIITA-202ENST00000381835 PPIP5K2O43314 1243 aa14.74□□□□□ -0.05
CIITA-202ENST00000381835 ADCK5Q3MIX3 580 aa14.74□□□□□ -0.05
CIITA-202ENST00000381835 GRIPAP1Q4V328 841 aa14.74□□□□□ -0.05
CIITA-202ENST00000381835 TBC1D22AQ8WUA7 517 aa14.74□□□□□ -0.05
CIITA-202ENST00000381835 MYH2Q9UKX2 1941 aa14.74□□□□□ -0.05
CIITA-202ENST00000381835 FAM205AQ6ZU69 1335 aa14.74□□□□□ -0.05
CIITA-202ENST00000381835 MAST2Q6P0Q8 1798 aa14.74□□□□□ -0.05
CIITA-202ENST00000381835 MAGEB6P1A0A0J9YX57 407 aa14.74□□□□□ -0.05
CIITA-202ENST00000381835 ECE2O60344 883 aa14.74□□□□□ -0.05
CIITA-202ENST00000381835 FGAP02671 866 aa14.74□□□□□ -0.05
CIITA-202ENST00000381835 CYP21A2P08686 494 aa14.74□□□□□ -0.05
CIITA-202ENST00000381835 NUCB2P80303 420 aa14.74□□□□□ -0.05
CIITA-202ENST00000381835 KIAA2012Q0VF49 1180 aa14.74□□□□□ -0.05
CIITA-202ENST00000381835 PODNQ7Z5L7 613 aa14.74□□□□□ -0.05
CIITA-202ENST00000381835 KCNB2Q92953 911 aa14.74□□□□□ -0.05
CIITA-202ENST00000381835 JAKMIP1Q96N16 626 aaKnown RBP14.74□□□□□ -0.05
CIITA-202ENST00000381835 KCNQ5Q9NR82 932 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms