RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 PPP1R12CQ9BZL4 782 aa13.29□□□□□ -0.28
NPHP4-202ENST00000378161 SH2B1Q9NRF2 756 aaPredicted RBP13.29□□□□□ -0.28
NPHP4-202ENST00000378161 LIMCH1Q9UPQ0 1083 aa13.29□□□□□ -0.28
NPHP4-202ENST00000378161 TBC1D8O95759 1140 aa13.29□□□□□ -0.28
NPHP4-202ENST00000378161 TUBB2AQ13885 445 aa13.29□□□□□ -0.28
NPHP4-202ENST00000378161 SPECC1LQ69YQ0 1117 aa13.29□□□□□ -0.28
NPHP4-202ENST00000378161 CCDC65Q8IXS2 484 aa13.29□□□□□ -0.28
NPHP4-202ENST00000378161 ARFGAP2Q8N6H7 521 aa13.29□□□□□ -0.28
NPHP4-202ENST00000378161 ZNF396Q96N95 335 aaPredicted RBP13.29□□□□□ -0.28
NPHP4-202ENST00000378161 TUBB2BQ9BVA1 445 aa13.29□□□□□ -0.28
NPHP4-202ENST00000378161 ATG3Q9NT62 314 aa13.29□□□□□ -0.28
NPHP4-202ENST00000378161 EIF4G3O43432 1585 aaKnown RBP13.28□□□□□ -0.28
NPHP4-202ENST00000378161 LACTBP83111 547 aaPredicted RBP13.28□□□□□ -0.28
NPHP4-202ENST00000378161 C3orf20Q8ND61 904 aa13.28□□□□□ -0.28
NPHP4-202ENST00000378161 RAPGEF4Q8WZA2 1011 aa13.28□□□□□ -0.28
NPHP4-202ENST00000378161 ZNF189O75820 626 aaPredicted RBP13.28□□□□□ -0.28
NPHP4-202ENST00000378161 PAPOLAP51003 745 aaKnown RBP13.28□□□□□ -0.28
NPHP4-202ENST00000378161 FOSBP53539 338 aa13.28□□□□□ -0.28
NPHP4-202ENST00000378161 MYO1EQ12965 1108 aa13.28□□□□□ -0.28
NPHP4-202ENST00000378161 IFT88Q13099 833 aa13.28□□□□□ -0.28
NPHP4-202ENST00000378161 FOXR1Q6PIV2 292 aa13.28□□□□□ -0.28
NPHP4-202ENST00000378161 RALYLQ86SE5 291 aaKnown RBP13.28□□□□□ -0.28
NPHP4-202ENST00000378161 ANKRD23Q86SG2 305 aa13.28□□□□□ -0.28
NPHP4-202ENST00000378161 FBF1Q8TES7 1133 aa13.28□□□□□ -0.28
NPHP4-202ENST00000378161 NEUROD6Q96NK8 337 aa13.28□□□□□ -0.28
NPHP4-202ENST00000378161 A1CFQ9NQ94 594 aaKnown RBP13.28□□□□□ -0.28
NPHP4-202ENST00000378161 ABCC2Q92887 1545 aa13.28□□□□□ -0.28
NPHP4-202ENST00000378161 CTAGE9A4FU28 777 aa13.28□□□□□ -0.28
NPHP4-202ENST00000378161 FAM83GA6ND36 823 aa13.28□□□□□ -0.28
NPHP4-202ENST00000378161 ZBTB7BO15156 539 aaPredicted RBP13.28□□□□□ -0.28
NPHP4-202ENST00000378161 PPP1R7Q15435 360 aa13.28□□□□□ -0.28
NPHP4-202ENST00000378161 MFN1Q8IWA4 741 aa13.28□□□□□ -0.28
NPHP4-202ENST00000378161 CCDC83Q8IWF9 413 aa13.28□□□□□ -0.28
NPHP4-202ENST00000378161 USP26Q9BXU7 913 aa13.28□□□□□ -0.28
NPHP4-202ENST00000378161 USP27XA6NNY8 438 aa13.27□□□□□ -0.28
NPHP4-202ENST00000378161 MYO1FO00160 1098 aa13.27□□□□□ -0.28
NPHP4-202ENST00000378161 ZFXP17010 805 aaPredicted RBP13.27□□□□□ -0.28
NPHP4-202ENST00000378161 SFSWAPQ12872 951 aaKnown RBP13.27□□□□□ -0.28
NPHP4-202ENST00000378161 KCNB1Q14721 858 aa13.27□□□□□ -0.28
NPHP4-202ENST00000378161 CASP8Q14790 479 aa13.27□□□□□ -0.28
NPHP4-202ENST00000378161 SPATA21Q7Z572 469 aa13.27□□□□□ -0.28
NPHP4-202ENST00000378161 SYCP3Q8IZU3 236 aa13.27□□□□□ -0.28
NPHP4-202ENST00000378161 AOPEPQ8N6M6 819 aa13.27□□□□□ -0.28
NPHP4-202ENST00000378161 DDX12PQ92771 950 aa13.27□□□□□ -0.28
NPHP4-202ENST00000378161 LUC7L2Q9Y383 392 aaKnown RBP13.27□□□□□ -0.28
NPHP4-202ENST00000378161 ABCC10Q5T3U5 1492 aa13.27□□□□□ -0.28
NPHP4-202ENST00000378161 SF3B2Q13435 895 aaKnown RBP13.27□□□□□ -0.28
NPHP4-202ENST00000378161 C8orf58Q8NAV2 365 aa13.27□□□□□ -0.28
NPHP4-202ENST00000378161 SOS1Q07889 1333 aaPredicted RBP13.27□□□□□ -0.29
NPHP4-202ENST00000378161 SNX1Q13596 522 aa13.27□□□□□ -0.29
NPHP4-202ENST00000378161 SEPT6Q14141 434 aa13.27□□□□□ -0.29
NPHP4-202ENST00000378161 KRT32Q14532 448 aa13.27□□□□□ -0.29
NPHP4-202ENST00000378161 SEPT7Q16181 437 aaKnown RBP13.27□□□□□ -0.29
NPHP4-202ENST00000378161 ANKS4BQ8N8V4 417 aa13.27□□□□□ -0.29
NPHP4-202ENST00000378161 HOOK2Q96ED9 719 aa13.27□□□□□ -0.29
NPHP4-202ENST00000378161 MEIS3Q99687 375 aa13.27□□□□□ -0.29
NPHP4-202ENST00000378161 PAPOLBQ9NRJ5 636 aaKnown RBP13.27□□□□□ -0.29
NPHP4-202ENST00000378161 MCM8Q9UJA3 840 aa13.27□□□□□ -0.29
NPHP4-202ENST00000378161 TADA3O75528 432 aa13.27□□□□□ -0.29
NPHP4-202ENST00000378161 SASH1O94885 1247 aa13.27□□□□□ -0.29
NPHP4-202ENST00000378161 OATP04181 439 aa13.27□□□□□ -0.29
NPHP4-202ENST00000378161 FERP16591 822 aa13.27□□□□□ -0.29
NPHP4-202ENST00000378161 PDE1AP54750 535 aa13.27□□□□□ -0.29
NPHP4-202ENST00000378161 FLIIQ13045 1269 aa13.27□□□□□ -0.29
NPHP4-202ENST00000378161 TRIM68Q6AZZ1 485 aa13.27□□□□□ -0.29
NPHP4-202ENST00000378161 AACSQ86V21 672 aa13.27□□□□□ -0.29
NPHP4-202ENST00000378161 CCDC170Q8IYT3 715 aa13.27□□□□□ -0.29
NPHP4-202ENST00000378161 TDRD7Q8NHU6 1098 aaKnown RBP13.27□□□□□ -0.29
NPHP4-202ENST00000378161 FAM81AQ8TBF8 368 aa13.27□□□□□ -0.29
NPHP4-202ENST00000378161 ZKSCAN4Q969J2 545 aaPredicted RBP13.27□□□□□ -0.29
NPHP4-202ENST00000378161 SEC62Q99442 399 aaKnown RBP13.27□□□□□ -0.29
NPHP4-202ENST00000378161 FRMD4BQ9Y2L6 1034 aa13.27□□□□□ -0.29
NPHP4-202ENST00000378161 TARBP1Q13395 1621 aaKnown RBP13.26□□□□□ -0.29
NPHP4-202ENST00000378161 PTPRTO14522 1441 aa13.26□□□□□ -0.29
NPHP4-202ENST00000378161 CETN3O15182 167 aa13.26□□□□□ -0.29
NPHP4-202ENST00000378161 PLEKHM2Q8IWE5 1019 aa13.26□□□□□ -0.29
NPHP4-202ENST00000378161 ZNF483Q8TF39 744 aaPredicted RBP13.26□□□□□ -0.29
NPHP4-202ENST00000378161 UNC45AQ9H3U1 944 aa13.26□□□□□ -0.29
NPHP4-202ENST00000378161 AATFQ9NY61 560 aaKnown RBP eCLIP13.26□□□□□ -0.29
NPHP4-202ENST00000378161 TRIM21P19474 475 aaKnown RBP13.26□□□□□ -0.29
NPHP4-202ENST00000378161 PSMD7P51665 324 aa13.26□□□□□ -0.29
NPHP4-202ENST00000378161 EZH1Q92800 747 aaPredicted RBP13.26□□□□□ -0.29
NPHP4-202ENST00000378161 GBP5Q96PP8 586 aa13.26□□□□□ -0.29
NPHP4-202ENST00000378161 TPCN1Q9ULQ1 816 aa13.26□□□□□ -0.29
NPHP4-202ENST00000378161 EXOC5O00471 708 aa13.26□□□□□ -0.29
NPHP4-202ENST00000378161 TSNAXIP1Q2TAA8 658 aa13.26□□□□□ -0.29
NPHP4-202ENST00000378161 KLHL10Q6JEL2 608 aa13.26□□□□□ -0.29
NPHP4-202ENST00000378161 HOOK3Q86VS8 718 aa13.26□□□□□ -0.29
NPHP4-202ENST00000378161 LMBR1Q8WVP7 490 aa13.26□□□□□ -0.29
NPHP4-202ENST00000378161 TSGA10Q9BZW7 698 aa13.26□□□□□ -0.29
NPHP4-202ENST00000378161 NOP53Q9NZM5 478 aaKnown RBP13.26□□□□□ -0.29
NPHP4-202ENST00000378161 SBNO2Q9Y2G9 1366 aa13.26□□□□□ -0.29
NPHP4-202ENST00000378161 RPS6KA5O75582 802 aa13.25□□□□□ -0.29
NPHP4-202ENST00000378161 KARSQ15046 597 aaKnown RBP13.25□□□□□ -0.29
NPHP4-202ENST00000378161 C11orf91Q3C1V1 193 aa13.25□□□□□ -0.29
NPHP4-202ENST00000378161 CPLX4Q7Z7G2 160 aa13.25□□□□□ -0.29
NPHP4-202ENST00000378161 IFNKQ9P0W0 207 aa13.25□□□□□ -0.29
NPHP4-202ENST00000378161 TTC21BQ7Z4L5 1316 aa13.25□□□□□ -0.29
NPHP4-202ENST00000378161 RASSF10A6NK89 507 aa13.25□□□□□ -0.29
NPHP4-202ENST00000378161 CYP2E1P05181 493 aaPredicted RBP13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms