RNA–Protein interactions for RNA: ENST00000376709.8

VSX1-202, Transcript of visual system homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VSX1, Length 2,192 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-202ENST00000376709 C3orf67Q6ZVT6 689 aa23.74■■□□□ 1.39
VSX1-202ENST00000376709 CARMIL3Q8ND23 1372 aa23.73■■□□□ 1.39
VSX1-202ENST00000376709 WDR19Q8NEZ3 1342 aa23.73■■□□□ 1.39
VSX1-202ENST00000376709 COL4A1P02462 1669 aa23.73■■□□□ 1.39
VSX1-202ENST00000376709 RPS6KA4O75676 772 aa23.73■■□□□ 1.39
VSX1-202ENST00000376709 BCAMP50895 628 aa23.73■■□□□ 1.39
VSX1-202ENST00000376709 NBPF3Q9H094 633 aa23.73■■□□□ 1.39
VSX1-202ENST00000376709 MYH15Q9Y2K3 1946 aa23.73■■□□□ 1.39
VSX1-202ENST00000376709 LIG1P18858 919 aa23.72■■□□□ 1.39
VSX1-202ENST00000376709 STRBPQ96SI9 672 aaKnown RBP23.72■■□□□ 1.39
VSX1-202ENST00000376709 HS1BP3Q53T59 392 aa23.72■■□□□ 1.39
VSX1-202ENST00000376709 ZSCAN30Q86W11 494 aa23.72■■□□□ 1.39
VSX1-202ENST00000376709 TBC1D10CQ8IV04 446 aa23.72■■□□□ 1.39
VSX1-202ENST00000376709 NUP62CLQ9H1M0 184 aa23.72■■□□□ 1.39
VSX1-202ENST00000376709 UVSSAQ2YD98 709 aa23.71■■□□□ 1.39
VSX1-202ENST00000376709 AMIGO3Q86WK7 504 aa23.71■■□□□ 1.39
VSX1-202ENST00000376709 BICD2Q8TD16 824 aa23.71■■□□□ 1.39
VSX1-202ENST00000376709 NARFQ9UHQ1 456 aa23.71■■□□□ 1.39
VSX1-202ENST00000376709 CPLX1O14810 134 aa23.7■■□□□ 1.38
VSX1-202ENST00000376709 MBD4O95243 580 aa23.7■■□□□ 1.38
VSX1-202ENST00000376709 GUCY1B3Q02153 619 aa23.7■■□□□ 1.38
VSX1-202ENST00000376709 CEBPZQ03701 1054 aaKnown RBP23.7■■□□□ 1.38
VSX1-202ENST00000376709 FUCA2Q9BTY2 467 aa23.7■■□□□ 1.38
VSX1-202ENST00000376709 DACT1Q9NYF0 836 aa23.7■■□□□ 1.38
VSX1-202ENST00000376709 MSNP26038 577 aaKnown RBP23.69■■□□□ 1.38
VSX1-202ENST00000376709 GTF2E1P29083 439 aaPredicted RBP23.69■■□□□ 1.38
VSX1-202ENST00000376709 ANKRD18AQ8IVF6 992 aa23.69■■□□□ 1.38
VSX1-202ENST00000376709 SEPT12Q8IYM1 358 aa23.69■■□□□ 1.38
VSX1-202ENST00000376709 PATL2C9JE40 543 aaKnown RBP23.69■■□□□ 1.38
VSX1-202ENST00000376709 FDPSP14324 419 aaKnown RBP23.69■■□□□ 1.38
VSX1-202ENST00000376709 CAMK4Q16566 473 aa23.69■■□□□ 1.38
VSX1-202ENST00000376709 MAP3K11Q16584 847 aa23.69■■□□□ 1.38
VSX1-202ENST00000376709 RAB11FIP4Q86YS3 637 aa23.69■■□□□ 1.38
VSX1-202ENST00000376709 NAPBQ9H115 298 aa23.69■■□□□ 1.38
VSX1-202ENST00000376709 DENND2AQ9ULE3 1009 aa23.69■■□□□ 1.38
VSX1-202ENST00000376709 ANGEL1Q9UNK9 670 aaKnown RBP23.69■■□□□ 1.38
VSX1-202ENST00000376709 HPS5Q9UPZ3 1129 aa23.69■■□□□ 1.38
VSX1-202ENST00000376709 CCDC192P0DO97 292 aa23.68■■□□□ 1.38
VSX1-202ENST00000376709 PGBD1Q96JS3 809 aa23.68■■□□□ 1.38
VSX1-202ENST00000376709 TRPC5Q9UL62 973 aaPredicted RBP23.68■■□□□ 1.38
VSX1-202ENST00000376709 RTCBQ9Y3I0 505 aaKnown RBP23.68■■□□□ 1.38
VSX1-202ENST00000376709 EP400Q96L91 3159 aa23.68■■□□□ 1.38
VSX1-202ENST00000376709 ZPR1O75312 459 aa23.68■■□□□ 1.38
VSX1-202ENST00000376709 TNMDQ9H2S6 317 aa23.68■■□□□ 1.38
VSX1-202ENST00000376709 ARMT1Q9H993 441 aa23.68■■□□□ 1.38
VSX1-202ENST00000376709 ANO8Q9HCE9 1232 aaPredicted RBP23.68■■□□□ 1.38
VSX1-202ENST00000376709 DDX19AQ9NUU7 478 aaKnown RBP23.68■■□□□ 1.38
VSX1-202ENST00000376709 LRP2BPQ9P2M1 347 aa23.68■■□□□ 1.38
VSX1-202ENST00000376709 SBF2Q86WG5 1849 aa23.68■■□□□ 1.38
VSX1-202ENST00000376709 ONECUT3O60422 494 aaPredicted RBP23.67■■□□□ 1.38
VSX1-202ENST00000376709 ALX1Q15699 326 aa23.67■■□□□ 1.38
VSX1-202ENST00000376709 IFNL3Q8IZI9 196 aa23.67■■□□□ 1.38
VSX1-202ENST00000376709 ZMYM6O95789 1325 aa23.67■■□□□ 1.38
VSX1-202ENST00000376709 B4E1Z4 1266 aa23.67■■□□□ 1.38
VSX1-202ENST00000376709 RGL2O15211 777 aa23.67■■□□□ 1.38
VSX1-202ENST00000376709 CYB5R4Q7L1T6 521 aa23.67■■□□□ 1.38
VSX1-202ENST00000376709 ZNF396Q96N95 335 aaPredicted RBP23.67■■□□□ 1.38
VSX1-202ENST00000376709 CASZ1Q86V15 1759 aa23.66■■□□□ 1.38
VSX1-202ENST00000376709 LY75O60449 1722 aa23.66■■□□□ 1.38
VSX1-202ENST00000376709 ADD1P35611 737 aaKnown RBP23.66■■□□□ 1.38
VSX1-202ENST00000376709 SF3B3Q15393 1217 aaKnown RBP23.66■■□□□ 1.38
VSX1-202ENST00000376709 SETDB2Q96T68 719 aa23.66■■□□□ 1.38
VSX1-202ENST00000376709 TAF1P21675 1872 aa23.65■■□□□ 1.38
VSX1-202ENST00000376709 ATL3Q6DD88 541 aa23.65■■□□□ 1.38
VSX1-202ENST00000376709 ARHGEF1Q92888 912 aaKnown RBP23.65■■□□□ 1.38
VSX1-202ENST00000376709 C8orf76Q96K31 380 aa23.65■■□□□ 1.38
VSX1-202ENST00000376709 EPB41L4AQ9HCS5 686 aaPredicted RBP23.65■■□□□ 1.38
VSX1-202ENST00000376709 ORC3Q9UBD5 711 aaPredicted RBP23.65■■□□□ 1.38
VSX1-202ENST00000376709 CCDC39Q9UFE4 941 aa23.65■■□□□ 1.38
VSX1-202ENST00000376709 USP25Q9UHP3 1055 aa23.65■■□□□ 1.38
VSX1-202ENST00000376709 IQSEC3Q9UPP2 1182 aaPredicted RBP23.65■■□□□ 1.38
VSX1-202ENST00000376709 CHD4Q14839 1912 aa23.65■■□□□ 1.38
VSX1-202ENST00000376709 NEDD4P46934 1319 aa23.65■■□□□ 1.38
VSX1-202ENST00000376709 TAF1LQ8IZX4 1826 aa23.65■■□□□ 1.38
VSX1-202ENST00000376709 FTOQ9C0B1 505 aaKnown RBP eCLIP23.65■■□□□ 1.38
VSX1-202ENST00000376709 SH2B2O14492 632 aaPredicted RBP23.64■■□□□ 1.38
VSX1-202ENST00000376709 NR1I2O75469 434 aa23.64■■□□□ 1.38
VSX1-202ENST00000376709 NBPF5PQ86XG9 351 aaPredicted RBP23.64■■□□□ 1.38
VSX1-202ENST00000376709 GNL3LQ9NVN8 582 aaKnown RBP23.64■■□□□ 1.38
VSX1-202ENST00000376709 BSDC1Q9NW68 430 aaPredicted RBP23.64■■□□□ 1.38
VSX1-202ENST00000376709 PTMAP06454 111 aaKnown RBP23.64■■□□□ 1.37
VSX1-202ENST00000376709 GNAT2P19087 354 aa23.64■■□□□ 1.37
VSX1-202ENST00000376709 CCDC24Q8N4L8 307 aa23.64■■□□□ 1.37
VSX1-202ENST00000376709 TMEM87BQ96K49 555 aa23.64■■□□□ 1.37
VSX1-202ENST00000376709 USP28Q96RU2 1077 aa23.64■■□□□ 1.37
VSX1-202ENST00000376709 NACAP1Q9BZK3 213 aa23.64■■□□□ 1.37
VSX1-202ENST00000376709 NOL7Q9UMY1 257 aaKnown RBP23.64■■□□□ 1.37
VSX1-202ENST00000376709 TDO2P48775 406 aa23.63■■□□□ 1.37
VSX1-202ENST00000376709 METAP2P50579 478 aaKnown RBP eCLIP23.63■■□□□ 1.37
VSX1-202ENST00000376709 CKAP2LQ8IYA6 745 aa23.63■■□□□ 1.37
VSX1-202ENST00000376709 LCORLQ8N3X6 602 aa23.63■■□□□ 1.37
VSX1-202ENST00000376709 NKX2-3Q8TAU0 364 aa23.63■■□□□ 1.37
VSX1-202ENST00000376709 NYXQ9GZU5 481 aa23.63■■□□□ 1.37
VSX1-202ENST00000376709 CLSTN2Q9H4D0 955 aa23.63■■□□□ 1.37
VSX1-202ENST00000376709 RCOR1Q9UKL0 485 aa23.63■■□□□ 1.37
VSX1-202ENST00000376709 A0A1B0GUL6 1792 aa23.63■■□□□ 1.37
VSX1-202ENST00000376709 GSG1L2A8MUP6 293 aa23.62■■□□□ 1.37
VSX1-202ENST00000376709 GYG1P46976 350 aa23.62■■□□□ 1.37
VSX1-202ENST00000376709 CTDSPL2Q05D32 466 aa23.62■■□□□ 1.37
VSX1-202ENST00000376709 SLC10A5Q5PT55 438 aa23.62■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms