RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 RNF34Q969K3 372 aa15.44■□□□□ 0.06
COL4A1-201ENST00000375820 TFCP2L1Q9NZI6 479 aa15.44■□□□□ 0.06
COL4A1-201ENST00000375820 PRKG1Q13976 671 aa15.44■□□□□ 0.06
COL4A1-201ENST00000375820 LMBR1Q8WVP7 490 aa15.44■□□□□ 0.06
COL4A1-201ENST00000375820 VPS16Q9H269 839 aa15.44■□□□□ 0.06
COL4A1-201ENST00000375820 ZFYP08048 801 aaPredicted RBP15.44■□□□□ 0.06
COL4A1-201ENST00000375820 SNX16P57768 344 aa15.44■□□□□ 0.06
COL4A1-201ENST00000375820 DDX12PQ92771 950 aa15.44■□□□□ 0.06
COL4A1-201ENST00000375820 TRIM31Q9BZY9 425 aa15.44■□□□□ 0.06
COL4A1-201ENST00000375820 CCDC169A6NNP5 214 aa15.44■□□□□ 0.06
COL4A1-201ENST00000375820 HAUS7Q99871 368 aa15.44■□□□□ 0.06
COL4A1-201ENST00000375820 RNF113AO15541 343 aaKnown RBP15.44■□□□□ 0.06
COL4A1-201ENST00000375820 CRCPO75575 148 aa15.44■□□□□ 0.06
COL4A1-201ENST00000375820 PRPHP41219 470 aa15.44■□□□□ 0.06
COL4A1-201ENST00000375820 IRS4O14654 1257 aaPredicted RBP15.43■□□□□ 0.06
COL4A1-201ENST00000375820 HS2ST1Q7LGA3 356 aa15.43■□□□□ 0.06
COL4A1-201ENST00000375820 TBC1D7Q9P0N9 293 aa15.43■□□□□ 0.06
COL4A1-201ENST00000375820 VIMP08670 466 aaKnown RBP15.43■□□□□ 0.06
COL4A1-201ENST00000375820 C10orf67Q8IYJ2 551 aa15.43■□□□□ 0.06
COL4A1-201ENST00000375820 TRIM7Q9C029 511 aa15.43■□□□□ 0.06
COL4A1-201ENST00000375820 CCDC24Q8N4L8 307 aa15.43■□□□□ 0.06
COL4A1-201ENST00000375820 MRPL50Q8N5N7 158 aaKnown RBP15.43■□□□□ 0.06
COL4A1-201ENST00000375820 ZC3H12CQ9C0D7 883 aaKnown RBP15.43■□□□□ 0.06
COL4A1-201ENST00000375820 CEP83Q9Y592 693 aa15.43■□□□□ 0.06
COL4A1-201ENST00000375820 NCAPD3P42695 1498 aa15.43■□□□□ 0.06
COL4A1-201ENST00000375820 PSMD6Q15008 389 aa15.43■□□□□ 0.06
COL4A1-201ENST00000375820 CCDC122Q5T0U0 273 aa15.43■□□□□ 0.06
COL4A1-201ENST00000375820 BMP15O95972 392 aa15.43■□□□□ 0.06
COL4A1-201ENST00000375820 GNAQP50148 359 aa15.43■□□□□ 0.06
COL4A1-201ENST00000375820 SPAG1Q07617 926 aa15.43■□□□□ 0.06
COL4A1-201ENST00000375820 RAD51AP2Q09MP3 1159 aa15.43■□□□□ 0.06
COL4A1-201ENST00000375820 SEPT14Q6ZU15 432 aa15.43■□□□□ 0.06
COL4A1-201ENST00000375820 KIFC2Q96AC6 838 aa15.43■□□□□ 0.06
COL4A1-201ENST00000375820 BICC1Q9H694 974 aaKnown RBP15.43■□□□□ 0.06
COL4A1-201ENST00000375820 PSMB7Q99436 277 aa15.42■□□□□ 0.06
COL4A1-201ENST00000375820 TRAF5O00463 557 aa15.42■□□□□ 0.06
COL4A1-201ENST00000375820 IL15P40933 162 aaPredicted RBP15.42■□□□□ 0.06
COL4A1-201ENST00000375820 STMN4Q9H169 189 aaPredicted RBP15.42■□□□□ 0.06
COL4A1-201ENST00000375820 RTL9Q8NET4 1388 aa15.42■□□□□ 0.06
COL4A1-201ENST00000375820 E7EVH7 732 aa15.42■□□□□ 0.06
COL4A1-201ENST00000375820 CCNT1O60563 726 aaKnown RBP15.42■□□□□ 0.06
COL4A1-201ENST00000375820 U2AF2P26368 475 aaKnown RBP eCLIP15.42■□□□□ 0.06
COL4A1-201ENST00000375820 HSPA1LP34931 641 aa15.42■□□□□ 0.06
COL4A1-201ENST00000375820 ATP8B2P98198 1209 aa15.42■□□□□ 0.06
COL4A1-201ENST00000375820 TSPYL6Q8N831 410 aa15.42■□□□□ 0.06
COL4A1-201ENST00000375820 BICDL2A1A5D9 508 aa15.42■□□□□ 0.06
COL4A1-201ENST00000375820 UTP14CQ5TAP6 766 aaKnown RBP15.42■□□□□ 0.06
COL4A1-201ENST00000375820 KSR1Q8IVT5 923 aa15.42■□□□□ 0.06
COL4A1-201ENST00000375820 RPUSD2Q8IZ73 545 aaKnown RBP15.42■□□□□ 0.06
COL4A1-201ENST00000375820 MBD4O95243 580 aa15.41■□□□□ 0.06
COL4A1-201ENST00000375820 LDHBP07195 334 aaKnown RBP15.41■□□□□ 0.06
COL4A1-201ENST00000375820 CD109Q6YHK3 1445 aa15.41■□□□□ 0.06
COL4A1-201ENST00000375820 B4E1Z4 1266 aa15.41■□□□□ 0.06
COL4A1-201ENST00000375820 KSR2Q6VAB6 950 aa15.41■□□□□ 0.06
COL4A1-201ENST00000375820 SEL1L2Q5TEA6 688 aa15.41■□□□□ 0.06
COL4A1-201ENST00000375820 PARP1P09874 1014 aaKnown RBP15.41■□□□□ 0.06
COL4A1-201ENST00000375820 MTHFSDQ2M296 383 aaKnown RBP15.41■□□□□ 0.06
COL4A1-201ENST00000375820 NOC4LQ9BVI4 516 aaKnown RBP15.41■□□□□ 0.06
COL4A1-201ENST00000375820 SPOPO43791 374 aa15.4■□□□□ 0.06
COL4A1-201ENST00000375820 IVLP07476 585 aa15.4■□□□□ 0.06
COL4A1-201ENST00000375820 PIK3AP1Q6ZUJ8 805 aa15.4■□□□□ 0.06
COL4A1-201ENST00000375820 USTQ9Y2C2 406 aa15.4■□□□□ 0.06
COL4A1-201ENST00000375820 LUC7L2Q9Y383 392 aaKnown RBP15.4■□□□□ 0.06
COL4A1-201ENST00000375820 SORBS3O60504 671 aa15.4■□□□□ 0.06
COL4A1-201ENST00000375820 RUFY3Q7L099 469 aa15.4■□□□□ 0.06
COL4A1-201ENST00000375820 PARP3Q9Y6F1 533 aa15.4■□□□□ 0.06
COL4A1-201ENST00000375820 TTC14Q96N46 770 aa15.4■□□□□ 0.06
COL4A1-201ENST00000375820 FNBP1Q96RU3 617 aa15.4■□□□□ 0.06
COL4A1-201ENST00000375820 SAMD15Q9P1V8 674 aa15.4■□□□□ 0.06
COL4A1-201ENST00000375820 FRMD4BQ9Y2L6 1034 aa15.4■□□□□ 0.06
COL4A1-201ENST00000375820 MYCLP12524 364 aaPredicted RBP15.4■□□□□ 0.06
COL4A1-201ENST00000375820 ARMT1Q9H993 441 aa15.4■□□□□ 0.06
COL4A1-201ENST00000375820 NDUFB9Q9Y6M9 179 aa15.4■□□□□ 0.06
COL4A1-201ENST00000375820 BEND3Q5T5X7 828 aa15.4■□□□□ 0.06
COL4A1-201ENST00000375820 EPSTI1Q96J88 318 aa15.4■□□□□ 0.06
COL4A1-201ENST00000375820 CAVIN2O95810 425 aa15.39■□□□□ 0.05
COL4A1-201ENST00000375820 DDB1Q16531 1140 aa15.39■□□□□ 0.05
COL4A1-201ENST00000375820 INF2Q27J81 1249 aa15.39■□□□□ 0.05
COL4A1-201ENST00000375820 C17orf53Q8N3J3 647 aaPredicted RBP15.39■□□□□ 0.05
COL4A1-201ENST00000375820 CCT6BQ92526 530 aa15.39■□□□□ 0.05
COL4A1-201ENST00000375820 TTLL3Q9Y4R7 772 aa15.39■□□□□ 0.05
COL4A1-201ENST00000375820 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.39■□□□□ 0.05
COL4A1-201ENST00000375820 ATP2A2P16615 1042 aaKnown RBP15.39■□□□□ 0.05
COL4A1-201ENST00000375820 HMGB2P26583 209 aaKnown RBP15.39■□□□□ 0.05
COL4A1-201ENST00000375820 NBPF11Q86T75 865 aa15.39■□□□□ 0.05
COL4A1-201ENST00000375820 ANKRD44Q8N8A2 993 aa15.39■□□□□ 0.05
COL4A1-201ENST00000375820 NCOA5Q9HCD5 579 aaKnown RBP15.39■□□□□ 0.05
COL4A1-201ENST00000375820 NOL3O60936 208 aaKnown RBP15.39■□□□□ 0.05
COL4A1-201ENST00000375820 GABPAQ06546 454 aa15.39■□□□□ 0.05
COL4A1-201ENST00000375820 CALCOCO2Q13137 446 aa15.39■□□□□ 0.05
COL4A1-201ENST00000375820 KLHDC4Q8TBB5 520 aa15.39■□□□□ 0.05
COL4A1-201ENST00000375820 MTRF1LQ9UGC7 380 aaKnown RBP15.39■□□□□ 0.05
COL4A1-201ENST00000375820 EBAG9O00559 213 aa15.39■□□□□ 0.05
COL4A1-201ENST00000375820 PDE4DQ08499 809 aa15.39■□□□□ 0.05
COL4A1-201ENST00000375820 ADGRL1O94910 1474 aa15.39■□□□□ 0.05
COL4A1-201ENST00000375820 PRDM1O75626 825 aa15.38■□□□□ 0.05
COL4A1-201ENST00000375820 HDAC1Q13547 482 aaPredicted RBP15.38■□□□□ 0.05
COL4A1-201ENST00000375820 OTUD7BQ6GQQ9 843 aa15.38■□□□□ 0.05
COL4A1-201ENST00000375820 SV2BQ7L1I2 683 aa15.38■□□□□ 0.05
COL4A1-201ENST00000375820 BAG1Q99933 345 aaPredicted RBP15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms