RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 ZFYVE9O95405 1425 aa12.95□□□□□ -0.34
PTPRF-203ENST00000372407 MNAT1P51948 309 aa12.95□□□□□ -0.34
PTPRF-203ENST00000372407 SYT10Q6XYQ8 523 aa12.95□□□□□ -0.34
PTPRF-203ENST00000372407 IP6K1Q92551 441 aa12.95□□□□□ -0.34
PTPRF-203ENST00000372407 KRT13P13646 458 aa12.95□□□□□ -0.34
PTPRF-203ENST00000372407 RFC4P35249 363 aa12.95□□□□□ -0.34
PTPRF-203ENST00000372407 TFCP2Q12800 502 aa12.95□□□□□ -0.34
PTPRF-203ENST00000372407 ATRIPQ8WXE1 791 aa12.95□□□□□ -0.34
PTPRF-203ENST00000372407 PUF60Q9UHX1 559 aaKnown RBP12.95□□□□□ -0.34
PTPRF-203ENST00000372407 NPC1L1Q9UHC9 1359 aa12.95□□□□□ -0.34
PTPRF-203ENST00000372407 BICDL2A1A5D9 508 aa12.95□□□□□ -0.34
PTPRF-203ENST00000372407 NF2P35240 595 aa12.95□□□□□ -0.34
PTPRF-203ENST00000372407 RTL9Q8NET4 1388 aa12.94□□□□□ -0.34
PTPRF-203ENST00000372407 MAP3K5Q99683 1374 aa12.94□□□□□ -0.34
PTPRF-203ENST00000372407 PTPRMP28827 1452 aa12.94□□□□□ -0.34
PTPRF-203ENST00000372407 DIP2CQ9Y2E4 1556 aa12.94□□□□□ -0.34
PTPRF-203ENST00000372407 CPA1P15085 419 aa12.94□□□□□ -0.34
PTPRF-203ENST00000372407 CAPN2P17655 700 aa12.94□□□□□ -0.34
PTPRF-203ENST00000372407 CHMP4BP1P59074 171 aa12.94□□□□□ -0.34
PTPRF-203ENST00000372407 FERMT2Q96AC1 680 aa12.94□□□□□ -0.34
PTPRF-203ENST00000372407 RBSNQ9H1K0 784 aa12.94□□□□□ -0.34
PTPRF-203ENST00000372407 MAGEB6P1A0A0J9YX57 407 aa12.94□□□□□ -0.34
PTPRF-203ENST00000372407 HSPA4P34932 840 aa12.94□□□□□ -0.34
PTPRF-203ENST00000372407 CNGA4Q8IV77 575 aa12.94□□□□□ -0.34
PTPRF-203ENST00000372407 LMBR1Q8WVP7 490 aa12.94□□□□□ -0.34
PTPRF-203ENST00000372407 LZTFL1Q9NQ48 299 aa12.94□□□□□ -0.34
PTPRF-203ENST00000372407 RSPH14Q9UHP6 348 aa12.94□□□□□ -0.34
PTPRF-203ENST00000372407 IKBKGQ9Y6K9 419 aa12.94□□□□□ -0.34
PTPRF-203ENST00000372407 KDM5CP41229 1560 aa12.94□□□□□ -0.34
PTPRF-203ENST00000372407 KARSQ15046 597 aaKnown RBP12.94□□□□□ -0.34
PTPRF-203ENST00000372407 ZNF219Q9P2Y4 722 aaPredicted RBP12.94□□□□□ -0.34
PTPRF-203ENST00000372407 TET3O43151 1660 aa12.94□□□□□ -0.34
PTPRF-203ENST00000372407 A0A1B0GVL5 298 aa12.93□□□□□ -0.34
PTPRF-203ENST00000372407 ARHGEF40Q8TER5 1519 aa12.93□□□□□ -0.34
PTPRF-203ENST00000372407 SETDB2Q96T68 719 aa12.93□□□□□ -0.34
PTPRF-203ENST00000372407 CCDC77Q9BR77 488 aa12.93□□□□□ -0.34
PTPRF-203ENST00000372407 GUCA1BQ9UMX6 200 aa12.93□□□□□ -0.34
PTPRF-203ENST00000372407 MAP3K19Q56UN5 1328 aa12.93□□□□□ -0.34
PTPRF-203ENST00000372407 KRT2P35908 639 aa12.93□□□□□ -0.34
PTPRF-203ENST00000372407 ARFGAP2Q8N6H7 521 aa12.93□□□□□ -0.34
PTPRF-203ENST00000372407 CERKQ8TCT0 537 aa12.93□□□□□ -0.34
PTPRF-203ENST00000372407 IPO4Q8TEX9 1081 aaKnown RBP12.93□□□□□ -0.34
PTPRF-203ENST00000372407 PODXL2Q9NZ53 605 aa12.93□□□□□ -0.34
PTPRF-203ENST00000372407 NIP7Q9Y221 180 aaKnown RBP eCLIP12.93□□□□□ -0.349e-8■□□□□ 8.2
PTPRF-203ENST00000372407 KAT6BQ8WYB5 2073 aa12.93□□□□□ -0.34
PTPRF-203ENST00000372407 GNA11P29992 359 aa12.93□□□□□ -0.34
PTPRF-203ENST00000372407 ZNF569Q5MCW4 686 aa12.93□□□□□ -0.34
PTPRF-203ENST00000372407 DTHD1Q6ZMT9 781 aa12.93□□□□□ -0.34
PTPRF-203ENST00000372407 G2E3Q7L622 706 aa12.93□□□□□ -0.34
PTPRF-203ENST00000372407 OTUD7AQ8TE49 926 aaPredicted RBP12.93□□□□□ -0.34
PTPRF-203ENST00000372407 FERMT1Q9BQL6 677 aa12.93□□□□□ -0.34
PTPRF-203ENST00000372407 UBXN1Q04323 297 aa12.93□□□□□ -0.34
PTPRF-203ENST00000372407 FBF1Q8TES7 1133 aa12.93□□□□□ -0.34
PTPRF-203ENST00000372407 DCAF5Q96JK2 942 aa12.93□□□□□ -0.34
PTPRF-203ENST00000372407 UTP14AQ9BVJ6 771 aaKnown RBP12.93□□□□□ -0.34
PTPRF-203ENST00000372407 CCDC94Q9BW85 323 aaPredicted RBP12.93□□□□□ -0.34
PTPRF-203ENST00000372407 HELLSQ9NRZ9 838 aa12.93□□□□□ -0.34
PTPRF-203ENST00000372407 ELP1O95163 1332 aa12.92□□□□□ -0.34
PTPRF-203ENST00000372407 VAV2P52735 878 aa12.92□□□□□ -0.34
PTPRF-203ENST00000372407 RILPL1Q5EBL4 403 aa12.92□□□□□ -0.34
PTPRF-203ENST00000372407 BICC1Q9H694 974 aaKnown RBP12.92□□□□□ -0.34
PTPRF-203ENST00000372407 BABAM1Q9NWV8 329 aa12.92□□□□□ -0.34
PTPRF-203ENST00000372407 EDC4Q6P2E9 1401 aaKnown RBP12.92□□□□□ -0.34
PTPRF-203ENST00000372407 KDM2BQ8NHM5 1336 aa12.92□□□□□ -0.34
PTPRF-203ENST00000372407 SGSM2O43147 1006 aa12.92□□□□□ -0.34
PTPRF-203ENST00000372407 WDHD1O75717 1129 aaPredicted RBP12.92□□□□□ -0.34
PTPRF-203ENST00000372407 HOXC9P31274 260 aa12.92□□□□□ -0.34
PTPRF-203ENST00000372407 C6orf163Q5TEZ5 329 aa12.92□□□□□ -0.34
PTPRF-203ENST00000372407 HS2ST1Q7LGA3 356 aa12.92□□□□□ -0.34
PTPRF-203ENST00000372407 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.92□□□□□ -0.34
PTPRF-203ENST00000372407 TICAM2Q86XR7 235 aa12.92□□□□□ -0.34
PTPRF-203ENST00000372407 HELBQ8NG08 1087 aaPredicted RBP12.92□□□□□ -0.34
PTPRF-203ENST00000372407 RASAL2Q9UJF2 1139 aa12.92□□□□□ -0.34
PTPRF-203ENST00000372407 ROBO2Q9HCK4 1378 aa12.92□□□□□ -0.34
PTPRF-203ENST00000372407 AGLP35573 1532 aa12.92□□□□□ -0.34
PTPRF-203ENST00000372407 RPS6KB1P23443 525 aa12.92□□□□□ -0.34
PTPRF-203ENST00000372407 ZNF445P59923 1031 aa12.92□□□□□ -0.34
PTPRF-203ENST00000372407 NEK11Q8NG66 645 aa12.92□□□□□ -0.34
PTPRF-203ENST00000372407 EBAG9O00559 213 aa12.92□□□□□ -0.34
PTPRF-203ENST00000372407 IRS4O14654 1257 aaPredicted RBP12.92□□□□□ -0.34
PTPRF-203ENST00000372407 ARID5AQ03989 594 aa12.92□□□□□ -0.34
PTPRF-203ENST00000372407 BICD1Q96G01 975 aa12.92□□□□□ -0.34
PTPRF-203ENST00000372407 BAG1Q99933 345 aaPredicted RBP12.92□□□□□ -0.34
PTPRF-203ENST00000372407 LLPHQ9BRT6 129 aaKnown RBP12.92□□□□□ -0.34
PTPRF-203ENST00000372407 MCM9Q9NXL9 1143 aa12.92□□□□□ -0.34
PTPRF-203ENST00000372407 A0A1W2PRG0 241 aa12.91□□□□□ -0.34
PTPRF-203ENST00000372407 HOXB7P09629 217 aa12.91□□□□□ -0.34
PTPRF-203ENST00000372407 FAM98CQ17RN3 349 aaKnown RBP12.91□□□□□ -0.34
PTPRF-203ENST00000372407 NSRP1Q9H0G5 558 aaKnown RBP12.91□□□□□ -0.34
PTPRF-203ENST00000372407 SPATA31E1Q6ZUB1 1445 aa12.91□□□□□ -0.34
PTPRF-203ENST00000372407 NBPF14Q5TI25 921 aa12.91□□□□□ -0.34
PTPRF-203ENST00000372407 ERO1AQ96HE7 468 aa12.91□□□□□ -0.34
PTPRF-203ENST00000372407 AOX1Q06278 1338 aa12.91□□□□□ -0.34
PTPRF-203ENST00000372407 CHL1O00533 1208 aa12.91□□□□□ -0.34
PTPRF-203ENST00000372407 ATP2C2O75185 946 aa12.91□□□□□ -0.34
PTPRF-203ENST00000372407 PLCG2P16885 1265 aa12.91□□□□□ -0.34
PTPRF-203ENST00000372407 DZIP3Q86Y13 1208 aaKnown RBP12.91□□□□□ -0.34
PTPRF-203ENST00000372407 MAGEB6Q8N7X4 407 aa12.91□□□□□ -0.34
PTPRF-203ENST00000372407 MIGA1Q8NAN2 632 aa12.91□□□□□ -0.34
PTPRF-203ENST00000372407 RXRAP19793 462 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms