RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 OTOFQ9HC10 1997 aa11.07□□□□□ -0.64
HMGB1P39-201ENST00000366304 UNC80Q8N2C7 3258 aa11.06□□□□□ -0.64
HMGB1P39-201ENST00000366304 ZBTB7BO15156 539 aaPredicted RBP11.06□□□□□ -0.64
HMGB1P39-201ENST00000366304 PPP1R12BO60237 982 aaPredicted RBP11.06□□□□□ -0.64
HMGB1P39-201ENST00000366304 NEFMP07197 916 aa11.06□□□□□ -0.64
HMGB1P39-201ENST00000366304 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.06□□□□□ -0.64
HMGB1P39-201ENST00000366304 MTMR14Q8NCE2 650 aa11.06□□□□□ -0.64
HMGB1P39-201ENST00000366304 TTLL11Q8NHH1 800 aa11.06□□□□□ -0.64
HMGB1P39-201ENST00000366304 BSDC1Q9NW68 430 aaPredicted RBP11.06□□□□□ -0.64
HMGB1P39-201ENST00000366304 CTSWP56202 376 aa11.05□□□□□ -0.64
HMGB1P39-201ENST00000366304 LACTBP83111 547 aaPredicted RBP11.05□□□□□ -0.64
HMGB1P39-201ENST00000366304 DLGAP5Q15398 846 aa11.05□□□□□ -0.64
HMGB1P39-201ENST00000366304 TAF1CQ15572 869 aaPredicted RBP11.05□□□□□ -0.64
HMGB1P39-201ENST00000366304 OTUD7BQ6GQQ9 843 aa11.05□□□□□ -0.64
HMGB1P39-201ENST00000366304 HYPKQ9NX55 129 aa11.05□□□□□ -0.64
HMGB1P39-201ENST00000366304 CCL15-CCL14A0A0B4J2E2 113 aa11.04□□□□□ -0.64
HMGB1P39-201ENST00000366304 UNCXA6NJT0 531 aa11.04□□□□□ -0.64
HMGB1P39-201ENST00000366304 RASA3Q14644 834 aa11.04□□□□□ -0.64
HMGB1P39-201ENST00000366304 CCL15Q16663 113 aa11.04□□□□□ -0.64
HMGB1P39-201ENST00000366304 CFAP100Q494V2 611 aa11.04□□□□□ -0.64
HMGB1P39-201ENST00000366304 DUSP27Q5VZP5 1158 aa11.04□□□□□ -0.64
HMGB1P39-201ENST00000366304 RIC3Q7Z5B4 369 aa11.04□□□□□ -0.64
HMGB1P39-201ENST00000366304 ANKRD13AQ8IZ07 590 aa11.04□□□□□ -0.64
HMGB1P39-201ENST00000366304 CCDC191Q8NCU4 936 aa11.04□□□□□ -0.64
HMGB1P39-201ENST00000366304 TEPSINQ96N21 525 aa11.04□□□□□ -0.64
HMGB1P39-201ENST00000366304 VEZTQ9HBM0 779 aa11.04□□□□□ -0.64
HMGB1P39-201ENST00000366304 LAS1LQ9Y4W2 734 aaKnown RBP11.04□□□□□ -0.64
HMGB1P39-201ENST00000366304 PPP2R3BQ9Y5P8 575 aa11.04□□□□□ -0.64
HMGB1P39-201ENST00000366304 SPEF2Q9C093 1822 aa11.04□□□□□ -0.64
HMGB1P39-201ENST00000366304 F8W031 263 aaPredicted RBP11.03□□□□□ -0.64
HMGB1P39-201ENST00000366304 IGKV5-2P06315 115 aa11.03□□□□□ -0.64
HMGB1P39-201ENST00000366304 IREB2P48200 963 aaKnown RBP11.03□□□□□ -0.64
HMGB1P39-201ENST00000366304 MMP14P50281 582 aa11.03□□□□□ -0.64
HMGB1P39-201ENST00000366304 VGLL4Q14135 290 aa11.03□□□□□ -0.64
HMGB1P39-201ENST00000366304 NEUROD2Q15784 382 aa11.03□□□□□ -0.64
HMGB1P39-201ENST00000366304 SUPT20HL1Q3ZLR7 823 aa11.03□□□□□ -0.64
HMGB1P39-201ENST00000366304 Q7L0L9 218 aa11.03□□□□□ -0.64
HMGB1P39-201ENST00000366304 ZFYVE28Q9HCC9 887 aa11.03□□□□□ -0.64
HMGB1P39-201ENST00000366304 CD209Q9NNX6 404 aa11.03□□□□□ -0.64
HMGB1P39-201ENST00000366304 CWC25Q9NXE8 425 aaPredicted RBP11.03□□□□□ -0.64
HMGB1P39-201ENST00000366304 JAG2Q9Y219 1238 aa11.03□□□□□ -0.64
HMGB1P39-201ENST00000366304 SPTBN5Q9NRC6 3674 aaKnown RBP11.02□□□□□ -0.64
HMGB1P39-201ENST00000366304 HOXB7P09629 217 aa11.02□□□□□ -0.65
HMGB1P39-201ENST00000366304 GJA8P48165 433 aa11.02□□□□□ -0.65
HMGB1P39-201ENST00000366304 TRIM47Q96LD4 638 aa11.02□□□□□ -0.65
HMGB1P39-201ENST00000366304 CDC5LQ99459 802 aaKnown RBP11.02□□□□□ -0.65
HMGB1P39-201ENST00000366304 COL25A1Q9BXS0 654 aaPredicted RBP11.02□□□□□ -0.65
HMGB1P39-201ENST00000366304 STAP2Q9UGK3 403 aa11.02□□□□□ -0.65
HMGB1P39-201ENST00000366304 LEMD3Q9Y2U8 911 aa11.02□□□□□ -0.65
HMGB1P39-201ENST00000366304 BTBD19C9JJ37 291 aa11.01□□□□□ -0.65
HMGB1P39-201ENST00000366304 TLR2O60603 784 aa11.01□□□□□ -0.65
HMGB1P39-201ENST00000366304 CCL5P13501 91 aa11.01□□□□□ -0.65
HMGB1P39-201ENST00000366304 CCDC146Q8IYE0 955 aa11.01□□□□□ -0.65
HMGB1P39-201ENST00000366304 METTL22Q9BUU2 404 aaPredicted RBP11.01□□□□□ -0.65
HMGB1P39-201ENST00000366304 VCANP13611 3396 aa11□□□□□ -0.65
HMGB1P39-201ENST00000366304 GJB1P08034 283 aa11□□□□□ -0.65
HMGB1P39-201ENST00000366304 GTF2A2P52657 109 aa11□□□□□ -0.65
HMGB1P39-201ENST00000366304 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11□□□□□ -0.65
HMGB1P39-201ENST00000366304 MBIPQ9NS73 344 aa11□□□□□ -0.65
HMGB1P39-201ENST00000366304 ZNF70Q9UC06 446 aaPredicted RBP11□□□□□ -0.65
HMGB1P39-201ENST00000366304 SRRDQ9UH36 339 aa11□□□□□ -0.65
HMGB1P39-201ENST00000366304 SNCAIPQ9Y6H5 919 aa11□□□□□ -0.65
HMGB1P39-201ENST00000366304 ELL2O00472 640 aaPredicted RBP10.99□□□□□ -0.65
HMGB1P39-201ENST00000366304 TAF5LO75529 589 aa10.99□□□□□ -0.65
HMGB1P39-201ENST00000366304 HSP90B1P14625 803 aaKnown RBP10.99□□□□□ -0.65
HMGB1P39-201ENST00000366304 OSBPP22059 807 aa10.99□□□□□ -0.65
HMGB1P39-201ENST00000366304 CWF19L2Q2TBE0 894 aaKnown RBP10.99□□□□□ -0.65
HMGB1P39-201ENST00000366304 C17orf99Q6UX52 265 aa10.99□□□□□ -0.65
HMGB1P39-201ENST00000366304 DEFB123Q8N688 67 aa10.99□□□□□ -0.65
HMGB1P39-201ENST00000366304 HELBQ8NG08 1087 aaPredicted RBP10.99□□□□□ -0.65
HMGB1P39-201ENST00000366304 CCER1Q8TC90 406 aaPredicted RBP10.99□□□□□ -0.65
HMGB1P39-201ENST00000366304 TMEM39BQ9GZU3 492 aa10.99□□□□□ -0.65
HMGB1P39-201ENST00000366304 CPA4Q9UI42 421 aa10.99□□□□□ -0.65
HMGB1P39-201ENST00000366304 RIPOR2Q9Y4F9 1068 aa10.99□□□□□ -0.65
HMGB1P39-201ENST00000366304 ADGRA2Q96PE1 1338 aa10.99□□□□□ -0.65
HMGB1P39-201ENST00000366304 ECM29Q5VYK3 1845 aa10.98□□□□□ -0.65
HMGB1P39-201ENST00000366304 A0A1W2PPC1 479 aa10.98□□□□□ -0.65
HMGB1P39-201ENST00000366304 SPDYE5A6NIY4 337 aa10.98□□□□□ -0.65
HMGB1P39-201ENST00000366304 FARP2O94887 1054 aaPredicted RBP10.98□□□□□ -0.65
HMGB1P39-201ENST00000366304 IL1R1P14778 569 aa10.98□□□□□ -0.65
HMGB1P39-201ENST00000366304 GRK4P32298 578 aa10.98□□□□□ -0.65
HMGB1P39-201ENST00000366304 PSMC4P43686 418 aa10.98□□□□□ -0.65
HMGB1P39-201ENST00000366304 MAP3K9P80192 1104 aa10.98□□□□□ -0.65
HMGB1P39-201ENST00000366304 CHRNDQ07001 517 aa10.98□□□□□ -0.65
HMGB1P39-201ENST00000366304 LMOD3Q0VAK6 560 aa10.98□□□□□ -0.65
HMGB1P39-201ENST00000366304 ARHGEF6Q15052 776 aa10.98□□□□□ -0.65
HMGB1P39-201ENST00000366304 U2AF1L4Q8WU68 220 aaKnown RBP10.98□□□□□ -0.65
HMGB1P39-201ENST00000366304 HTATIP2Q9BUP3 242 aa10.98□□□□□ -0.65
HMGB1P39-201ENST00000366304 RNF208Q9H0X6 261 aa10.98□□□□□ -0.65
HMGB1P39-201ENST00000366304 UNC93B1Q9H1C4 597 aa10.98□□□□□ -0.65
HMGB1P39-201ENST00000366304 PNNQ9H307 717 aaKnown RBP10.98□□□□□ -0.65
HMGB1P39-201ENST00000366304 TDRD3Q9H7E2 651 aaKnown RBP10.98□□□□□ -0.65
HMGB1P39-201ENST00000366304 MAP3K2Q9Y2U5 619 aa10.98□□□□□ -0.65
HMGB1P39-201ENST00000366304 NR2E3Q9Y5X4 410 aa10.98□□□□□ -0.65
HMGB1P39-201ENST00000366304 TCP10L2B9ZVM9 353 aa10.97□□□□□ -0.65
HMGB1P39-201ENST00000366304 H7C1W4 665 aa10.97□□□□□ -0.65
HMGB1P39-201ENST00000366304 IRF6O14896 467 aa10.97□□□□□ -0.65
HMGB1P39-201ENST00000366304 ZNF853P0CG23 659 aa10.97□□□□□ -0.65
HMGB1P39-201ENST00000366304 ITGA6P23229 1130 aa10.97□□□□□ -0.65
HMGB1P39-201ENST00000366304 GRIK5Q16478 980 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms