RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 MINDY4BA8MYZ0 360 aa10.9□□□□□ -0.66
UPF2-202ENST00000357604 TRIM29Q14134 588 aa10.9□□□□□ -0.66
UPF2-202ENST00000357604 MICALL2Q8IY33 904 aa10.9□□□□□ -0.66
UPF2-202ENST00000357604 DBNDD2Q9BQY9 259 aa10.9□□□□□ -0.66
UPF2-202ENST00000357604 ARPP21Q9UBL0 812 aaPredicted RBP10.9□□□□□ -0.66
UPF2-202ENST00000357604 C4AP0C0L4 1744 aa10.9□□□□□ -0.66
UPF2-202ENST00000357604 BTDP43251 543 aa10.9□□□□□ -0.66
UPF2-202ENST00000357604 ANKRD1Q15327 319 aa10.9□□□□□ -0.66
UPF2-202ENST00000357604 DHX36Q9H2U1 1008 aaKnown RBP10.9□□□□□ -0.66
UPF2-202ENST00000357604 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.9□□□□□ -0.66
UPF2-202ENST00000357604 BRMS1Q9HCU9 246 aa10.9□□□□□ -0.66
UPF2-202ENST00000357604 ZNF831Q5JPB2 1677 aa10.9□□□□□ -0.67
UPF2-202ENST00000357604 TIMM10P62072 90 aa10.89□□□□□ -0.67
UPF2-202ENST00000357604 NT5C2P49902 561 aa10.89□□□□□ -0.67
UPF2-202ENST00000357604 TTC22Q5TAA0 569 aa10.89□□□□□ -0.67
UPF2-202ENST00000357604 SWAP70Q9UH65 585 aa10.89□□□□□ -0.67
UPF2-202ENST00000357604 EPHX2P34913 555 aa10.89□□□□□ -0.67
UPF2-202ENST00000357604 CWC27Q6UX04 472 aaKnown RBP10.89□□□□□ -0.67
UPF2-202ENST00000357604 EHMT1Q9H9B1 1298 aa10.89□□□□□ -0.67
UPF2-202ENST00000357604 CPLX1O14810 134 aa10.89□□□□□ -0.67
UPF2-202ENST00000357604 CNOT7Q9UIV1 285 aaKnown RBP10.89□□□□□ -0.67
UPF2-202ENST00000357604 SASH1O94885 1247 aa10.88□□□□□ -0.67
UPF2-202ENST00000357604 TSPY3P0CV98 308 aa10.88□□□□□ -0.67
UPF2-202ENST00000357604 TSPY8P0CW00 308 aa10.88□□□□□ -0.67
UPF2-202ENST00000357604 GRM1Q13255 1194 aa10.88□□□□□ -0.67
UPF2-202ENST00000357604 HMG20BQ9P0W2 317 aa10.88□□□□□ -0.67
UPF2-202ENST00000357604 JAG2Q9Y219 1238 aa10.88□□□□□ -0.67
UPF2-202ENST00000357604 PSMD14O00487 310 aa10.88□□□□□ -0.67
UPF2-202ENST00000357604 CRKP46108 304 aa10.88□□□□□ -0.67
UPF2-202ENST00000357604 PDE1AP54750 535 aa10.88□□□□□ -0.67
UPF2-202ENST00000357604 MFSD6Q6ZSS7 791 aa10.88□□□□□ -0.67
UPF2-202ENST00000357604 C15orf52Q6ZUT6 534 aaKnown RBP10.88□□□□□ -0.67
UPF2-202ENST00000357604 GOPCQ9HD26 462 aa10.88□□□□□ -0.67
UPF2-202ENST00000357604 MCM9Q9NXL9 1143 aa10.88□□□□□ -0.67
UPF2-202ENST00000357604 GMPSP49915 693 aaPredicted RBP10.88□□□□□ -0.67
UPF2-202ENST00000357604 HDLBPQ00341 1268 aaKnown RBP10.88□□□□□ -0.67
UPF2-202ENST00000357604 NLGN2Q8NFZ4 835 aa10.88□□□□□ -0.67
UPF2-202ENST00000357604 RPAP1Q9BWH6 1393 aaPredicted RBP10.88□□□□□ -0.67
UPF2-202ENST00000357604 TJP1Q07157 1748 aa10.88□□□□□ -0.67
UPF2-202ENST00000357604 TNNQ9UQP3 1299 aa10.88□□□□□ -0.67
UPF2-202ENST00000357604 TCP10L2B9ZVM9 353 aa10.88□□□□□ -0.67
UPF2-202ENST00000357604 APPBP2Q92624 585 aa10.88□□□□□ -0.67
UPF2-202ENST00000357604 RRAGCQ9HB90 399 aa10.88□□□□□ -0.67
UPF2-202ENST00000357604 ADAMTS7Q9UKP4 1686 aa10.87□□□□□ -0.67
UPF2-202ENST00000357604 SCNN1DP51172 638 aa10.87□□□□□ -0.67
UPF2-202ENST00000357604 ZNF512BQ96KM6 892 aaPredicted RBP10.87□□□□□ -0.67
UPF2-202ENST00000357604 HAUS7Q99871 368 aa10.87□□□□□ -0.67
UPF2-202ENST00000357604 ZNF341Q9BYN7 854 aa10.87□□□□□ -0.67
UPF2-202ENST00000357604 TBC1D2Q9BYX2 928 aa10.87□□□□□ -0.67
UPF2-202ENST00000357604 RIPOR2Q9Y4F9 1068 aa10.87□□□□□ -0.67
UPF2-202ENST00000357604 ECE1P42892 770 aa10.87□□□□□ -0.67
UPF2-202ENST00000357604 PNMA2Q9UL42 364 aa10.87□□□□□ -0.67
UPF2-202ENST00000357604 TNS1Q9HBL0 1735 aaKnown RBP10.87□□□□□ -0.67
UPF2-202ENST00000357604 PDS5AQ29RF7 1337 aaKnown RBP10.87□□□□□ -0.67
UPF2-202ENST00000357604 B4DLN1 442 aa10.87□□□□□ -0.67
UPF2-202ENST00000357604 MRPL12P52815 198 aaKnown RBP10.87□□□□□ -0.67
UPF2-202ENST00000357604 KRT26Q7Z3Y9 468 aa10.87□□□□□ -0.67
UPF2-202ENST00000357604 NCLP19338 710 aaKnown RBP10.87□□□□□ -0.67
UPF2-202ENST00000357604 ZAP70P43403 619 aa10.87□□□□□ -0.67
UPF2-202ENST00000357604 USP14P54578 494 aa10.87□□□□□ -0.67
UPF2-202ENST00000357604 SCN7AQ01118 1682 aa10.86□□□□□ -0.67
UPF2-202ENST00000357604 CDKL5O76039 1030 aa10.86□□□□□ -0.67
UPF2-202ENST00000357604 ARID4AP29374 1257 aaPredicted RBP10.86□□□□□ -0.67
UPF2-202ENST00000357604 SAMD1Q6SPF0 538 aaPredicted RBP10.86□□□□□ -0.67
UPF2-202ENST00000357604 ESR2Q92731 530 aa10.86□□□□□ -0.67
UPF2-202ENST00000357604 SERPINA10Q9UK55 444 aa10.86□□□□□ -0.67
UPF2-202ENST00000357604 TAOK2Q9UL54 1235 aa10.86□□□□□ -0.67
UPF2-202ENST00000357604 LY75O60449 1722 aa10.86□□□□□ -0.67
UPF2-202ENST00000357604 MBD4O95243 580 aa10.86□□□□□ -0.67
UPF2-202ENST00000357604 OSBPP22059 807 aa10.86□□□□□ -0.67
UPF2-202ENST00000357604 UBE3CQ15386 1083 aa10.86□□□□□ -0.67
UPF2-202ENST00000357604 TBC1D10BQ4KMP7 808 aaPredicted RBP10.86□□□□□ -0.67
UPF2-202ENST00000357604 AATFQ9NY61 560 aaKnown RBP eCLIP10.86□□□□□ -0.67
UPF2-202ENST00000357604 MARCH6O60337 910 aa10.86□□□□□ -0.67
UPF2-202ENST00000357604 PHKA1P46020 1223 aa10.86□□□□□ -0.67
UPF2-202ENST00000357604 EPHA10Q5JZY3 1008 aa10.86□□□□□ -0.67
UPF2-202ENST00000357604 VPS53Q5VIR6 699 aa10.86□□□□□ -0.67
UPF2-202ENST00000357604 CDC37L1Q7L3B6 337 aa10.86□□□□□ -0.67
UPF2-202ENST00000357604 LDHDQ86WU2 507 aa10.86□□□□□ -0.67
UPF2-202ENST00000357604 KBTBD3Q8NAB2 608 aa10.86□□□□□ -0.67
UPF2-202ENST00000357604 DPF2Q92785 391 aa10.86□□□□□ -0.67
UPF2-202ENST00000357604 SHANK3Q9BYB0 1731 aa10.86□□□□□ -0.67
UPF2-202ENST00000357604 TSPY2A6NKD2 308 aa10.86□□□□□ -0.67
UPF2-202ENST00000357604 HHIPL2Q6UWX4 724 aa10.86□□□□□ -0.67
UPF2-202ENST00000357604 KAT14Q9H8E8 782 aa10.86□□□□□ -0.67
UPF2-202ENST00000357604 RTFDC1Q9BY42 306 aaPredicted RBP10.85□□□□□ -0.67
UPF2-202ENST00000357604 MYOZ2Q9NPC6 264 aa10.85□□□□□ -0.67
UPF2-202ENST00000357604 CCDC171Q6TFL3 1326 aa10.85□□□□□ -0.67
UPF2-202ENST00000357604 RANBP6O60518 1105 aaKnown RBP10.85□□□□□ -0.67
UPF2-202ENST00000357604 KIF5BP33176 963 aa10.85□□□□□ -0.67
UPF2-202ENST00000357604 CCDC96Q2M329 555 aa10.85□□□□□ -0.67
UPF2-202ENST00000357604 SMC5Q8IY18 1101 aa10.85□□□□□ -0.67
UPF2-202ENST00000357604 MIGA1Q8NAN2 632 aa10.85□□□□□ -0.67
UPF2-202ENST00000357604 SEC63Q9UGP8 760 aaKnown RBP10.85□□□□□ -0.67
UPF2-202ENST00000357604 UBR2Q8IWV8 1755 aa10.85□□□□□ -0.67
UPF2-202ENST00000357604 SCARF1Q14162 830 aa10.85□□□□□ -0.67
UPF2-202ENST00000357604 PCP11498 1178 aaKnown RBP10.85□□□□□ -0.67
UPF2-202ENST00000357604 TMTC2Q8N394 836 aa10.85□□□□□ -0.67
UPF2-202ENST00000357604 GPR101Q96P66 508 aaPredicted RBP10.85□□□□□ -0.67
UPF2-202ENST00000357604 AFDNP55196 1824 aaKnown RBP10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms