RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 CCDC77Q9BR77 488 aa13.32□□□□□ -0.28
COL9A1-202ENST00000357250 BICC1Q9H694 974 aaKnown RBP13.32□□□□□ -0.28
COL9A1-202ENST00000357250 MACROD2A1Z1Q3 448 aa13.31□□□□□ -0.28
COL9A1-202ENST00000357250 B4DLN1 442 aa13.31□□□□□ -0.28
COL9A1-202ENST00000357250 MRPL12P52815 198 aaKnown RBP13.31□□□□□ -0.28
COL9A1-202ENST00000357250 FAM160A1Q05DH4 1040 aa13.31□□□□□ -0.28
COL9A1-202ENST00000357250 PRPF4BQ13523 1007 aaKnown RBP13.31□□□□□ -0.28
COL9A1-202ENST00000357250 ISM2Q6H9L7 571 aa13.31□□□□□ -0.28
COL9A1-202ENST00000357250 HEATR3Q7Z4Q2 680 aa13.31□□□□□ -0.28
COL9A1-202ENST00000357250 DZIP3Q86Y13 1208 aaKnown RBP13.31□□□□□ -0.28
COL9A1-202ENST00000357250 CDCA7Q9BWT1 371 aaPredicted RBP13.31□□□□□ -0.28
COL9A1-202ENST00000357250 NIP7Q9Y221 180 aaKnown RBP eCLIP13.31□□□□□ -0.28
COL9A1-202ENST00000357250 NDUFB9Q9Y6M9 179 aa13.31□□□□□ -0.28
COL9A1-202ENST00000357250 DNA2P51530 1060 aa13.31□□□□□ -0.28
COL9A1-202ENST00000357250 BCCIPQ9P287 314 aaKnown RBP eCLIP13.31□□□□□ -0.28
COL9A1-202ENST00000357250 SAMM50Q9Y512 469 aa13.31□□□□□ -0.28
COL9A1-202ENST00000357250 KDM2BQ8NHM5 1336 aa13.31□□□□□ -0.28
COL9A1-202ENST00000357250 CPA1P15085 419 aa13.31□□□□□ -0.28
COL9A1-202ENST00000357250 DDB1Q16531 1140 aa13.31□□□□□ -0.28
COL9A1-202ENST00000357250 SBNO2Q9Y2G9 1366 aa13.31□□□□□ -0.28
COL9A1-202ENST00000357250 IRS4O14654 1257 aaPredicted RBP13.31□□□□□ -0.28
COL9A1-202ENST00000357250 PARP10Q53GL7 1025 aa13.31□□□□□ -0.28
COL9A1-202ENST00000357250 PLBD2Q8NHP8 589 aa13.31□□□□□ -0.28
COL9A1-202ENST00000357250 ZNF496Q96IT1 587 aaPredicted RBP13.31□□□□□ -0.28
COL9A1-202ENST00000357250 NSRP1Q9H0G5 558 aaKnown RBP13.31□□□□□ -0.28
COL9A1-202ENST00000357250 MARCKSP29966 332 aaPredicted RBP13.3□□□□□ -0.28
COL9A1-202ENST00000357250 MYL5Q02045 173 aa13.3□□□□□ -0.28
COL9A1-202ENST00000357250 TRIM14Q14142 442 aa13.3□□□□□ -0.28
COL9A1-202ENST00000357250 SIRT1Q96EB6 747 aa13.3□□□□□ -0.28
COL9A1-202ENST00000357250 CCDC42Q96M95 316 aa13.3□□□□□ -0.28
COL9A1-202ENST00000357250 PLEKHF1Q96S99 279 aa13.3□□□□□ -0.28
COL9A1-202ENST00000357250 RNF187Q5TA31 235 aaPredicted RBP13.3□□□□□ -0.28
COL9A1-202ENST00000357250 FAM89AQ96GI7 184 aa13.3□□□□□ -0.28
COL9A1-202ENST00000357250 KIAA0232Q92628 1395 aa13.3□□□□□ -0.28
COL9A1-202ENST00000357250 EYA2O00167 538 aa13.3□□□□□ -0.28
COL9A1-202ENST00000357250 RPS6KB1P23443 525 aa13.3□□□□□ -0.28
COL9A1-202ENST00000357250 TFCP2Q12800 502 aa13.3□□□□□ -0.28
COL9A1-202ENST00000357250 HS2ST1Q7LGA3 356 aa13.3□□□□□ -0.28
COL9A1-202ENST00000357250 NF2P35240 595 aa13.29□□□□□ -0.28
COL9A1-202ENST00000357250 GTF2F1P35269 517 aaKnown RBP eCLIP13.29□□□□□ -0.28
COL9A1-202ENST00000357250 LMAN1P49257 510 aa13.29□□□□□ -0.28
COL9A1-202ENST00000357250 DTHD1Q6ZMT9 781 aa13.29□□□□□ -0.28
COL9A1-202ENST00000357250 ARFGAP2Q8N6H7 521 aa13.29□□□□□ -0.28
COL9A1-202ENST00000357250 DHX58Q96C10 678 aa13.29□□□□□ -0.28
COL9A1-202ENST00000357250 GLT8D2Q9H1C3 349 aa13.29□□□□□ -0.28
COL9A1-202ENST00000357250 KDM5DQ9BY66 1539 aa13.29□□□□□ -0.28
COL9A1-202ENST00000357250 DENND2AQ9ULE3 1009 aa13.29□□□□□ -0.28
COL9A1-202ENST00000357250 LMOD1P29536 600 aaPredicted RBP13.29□□□□□ -0.28
COL9A1-202ENST00000357250 METTL22Q9BUU2 404 aaPredicted RBP13.29□□□□□ -0.28
COL9A1-202ENST00000357250 IKBKGQ9Y6K9 419 aa13.29□□□□□ -0.28
COL9A1-202ENST00000357250 TIMM10P62072 90 aa13.29□□□□□ -0.28
COL9A1-202ENST00000357250 APOBRQ0VD83 1088 aa13.29□□□□□ -0.28
COL9A1-202ENST00000357250 C6orf163Q5TEZ5 329 aa13.29□□□□□ -0.28
COL9A1-202ENST00000357250 WWC3Q9ULE0 1092 aa13.29□□□□□ -0.28
COL9A1-202ENST00000357250 PLCD1P51178 756 aa13.28□□□□□ -0.28
COL9A1-202ENST00000357250 SMARCC2Q8TAQ2 1214 aa13.28□□□□□ -0.28
COL9A1-202ENST00000357250 LUC7L2Q9Y383 392 aaKnown RBP13.28□□□□□ -0.28
COL9A1-202ENST00000357250 TSGA10Q9BZW7 698 aa13.28□□□□□ -0.28
COL9A1-202ENST00000357250 SPDYE3A6NKU9 549 aa13.28□□□□□ -0.28
COL9A1-202ENST00000357250 CHST3Q7LGC8 479 aa13.28□□□□□ -0.28
COL9A1-202ENST00000357250 TTC6Q86TZ1 520 aa13.28□□□□□ -0.28
COL9A1-202ENST00000357250 OGFOD1Q8N543 542 aa13.28□□□□□ -0.28
COL9A1-202ENST00000357250 NEK11Q8NG66 645 aa13.28□□□□□ -0.28
COL9A1-202ENST00000357250 LRRC45Q96CN5 670 aa13.28□□□□□ -0.28
COL9A1-202ENST00000357250 ATP2A1O14983 1001 aa13.28□□□□□ -0.28
COL9A1-202ENST00000357250 DEXIO95424 95 aa13.28□□□□□ -0.28
COL9A1-202ENST00000357250 RPL13P26373 211 aaKnown RBP13.28□□□□□ -0.28
COL9A1-202ENST00000357250 SREK1Q8WXA9 508 aaKnown RBP13.28□□□□□ -0.28
COL9A1-202ENST00000357250 IMPG2Q9BZV3 1241 aa13.28□□□□□ -0.28
COL9A1-202ENST00000357250 TM6SF1Q9BZW5 370 aa13.28□□□□□ -0.28
COL9A1-202ENST00000357250 SGSM2O43147 1006 aa13.27□□□□□ -0.28
COL9A1-202ENST00000357250 BICD1Q96G01 975 aa13.27□□□□□ -0.28
COL9A1-202ENST00000357250 EYA3Q99504 573 aa13.27□□□□□ -0.28
COL9A1-202ENST00000357250 STK24Q9Y6E0 443 aa13.27□□□□□ -0.28
COL9A1-202ENST00000357250 PLXNC1O60486 1568 aa13.27□□□□□ -0.28
COL9A1-202ENST00000357250 APPBP2Q92624 585 aa13.27□□□□□ -0.29
COL9A1-202ENST00000357250 TTC14Q96N46 770 aa13.27□□□□□ -0.29
COL9A1-202ENST00000357250 HOMER2Q9NSB8 354 aa13.27□□□□□ -0.29
COL9A1-202ENST00000357250 KDM5AP29375 1690 aaKnown RBP13.27□□□□□ -0.29
COL9A1-202ENST00000357250 ZNF594Q96JF6 807 aaPredicted RBP13.27□□□□□ -0.29
COL9A1-202ENST00000357250 MAGEB6Q8N7X4 407 aa13.27□□□□□ -0.29
COL9A1-202ENST00000357250 TSNARE1Q96NA8 513 aa13.27□□□□□ -0.29
COL9A1-202ENST00000357250 MMRN2Q9H8L6 949 aa13.27□□□□□ -0.29
COL9A1-202ENST00000357250 SLAIN2Q9P270 581 aa13.27□□□□□ -0.29
COL9A1-202ENST00000357250 TOM1O60784 492 aa13.26□□□□□ -0.29
COL9A1-202ENST00000357250 ZNF445P59923 1031 aa13.26□□□□□ -0.29
COL9A1-202ENST00000357250 TIGD1Q96MW7 591 aa13.26□□□□□ -0.29
COL9A1-202ENST00000357250 MCM9Q9NXL9 1143 aa13.26□□□□□ -0.29
COL9A1-202ENST00000357250 JAG2Q9Y219 1238 aa13.26□□□□□ -0.29
COL9A1-202ENST00000357250 SSH2Q76I76 1423 aa13.26□□□□□ -0.29
COL9A1-202ENST00000357250 TNNI3KQ59H18 835 aa13.26□□□□□ -0.29
COL9A1-202ENST00000357250 WDR78Q5VTH9 848 aa13.26□□□□□ -0.29
COL9A1-202ENST00000357250 ZC3H12CQ9C0D7 883 aaKnown RBP13.26□□□□□ -0.29
COL9A1-202ENST00000357250 TMX1Q9H3N1 280 aa13.26□□□□□ -0.29
COL9A1-202ENST00000357250 FPGT-TNNI3KV9GXZ4 949 aa13.26□□□□□ -0.29
COL9A1-202ENST00000357250 LDHBP07195 334 aaKnown RBP13.26□□□□□ -0.29
COL9A1-202ENST00000357250 EIF4A1P60842 406 aaKnown RBP13.26□□□□□ -0.29
COL9A1-202ENST00000357250 VWA3BQ502W6 1294 aa13.26□□□□□ -0.29
COL9A1-202ENST00000357250 ZNF622Q969S3 477 aaKnown RBP eCLIP13.26□□□□□ -0.29
COL9A1-202ENST00000357250 IFNKQ9P0W0 207 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms